Clone Sequence Records
BS13870.3prime Sequence
514 bp (475 high quality bases) assembled on 2006-10-13
> BS13870.3prime
ATGGTCTAGAAAGCTTTTAGTCCATCAGTCGAACGCCGGCTTGAACGTCA
TCGGCCATGCTGACTCCCTTCTTTTTCTTGCCTTCGCCGGCGGGCTTCTT
CTTGGTCAGGACTAGGGTTTCCGGCTCATTCTGCGACTGCTGACGCTTGC
CATTTCCGCTGGCTCCGCCACCACCACCTCCGCCGCCTCCCCCTCCGCCG
CTGTTGCTTCTCAGCTTGAAACGCGTCGTGGCCGCCGCCGCATTGTTGTT
GGCGCAATTGCATATGGCATCGAAGATCCGCACCACGAATCCTCGAGCGC
GATTCACCACCTTGCCGTTCTTAAAATTCGGTCGTTTTTCCTTGCCCTGT
TGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCAGCCCG
CAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTGGGGAT
TTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGATTCCA
TCAACGCTGTCCGG
BS13870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 534 | CG9368-RB | 37..534 | 514..17 | 2490 | 100 | Minus |
CG9368-PA | 549 | CG9368-RA | 239..549 | 327..17 | 1555 | 100 | Minus |
CG9368-PA | 549 | CG9368-RA | 37..223 | 514..328 | 935 | 100 | Minus |
CG9368-PC | 336 | CG9368-RC | 33..219 | 514..328 | 935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 177..674 | 514..17 | 2490 | 100 | Minus |
CG9368-RA | 1828 | CG9368-RA | 177..689 | 514..17 | 2330 | 97.1 | Minus |
CG9368-RD | 2423 | CG9368-RD | 974..1284 | 327..17 | 1555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602981 | 327..17 | 1555 | 100 | Minus |
3L | 28110227 | 3L | 19601809..19601977 | 514..346 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:29:35 has no hits.
BS13870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:09 Download gff for
BS13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 37..534 | 17..514 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:24 Download gff for
BS13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 177..682 | 7..514 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:22 Download gff for
BS13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 177..682 | 7..514 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:22 Download gff for
BS13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601809..19601976 | 347..514 | 100 | -> | Minus |
3L | 19602042..19602060 | 328..346 | 100 | -> | Minus |
3L | 19602671..19602989 | 7..327 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:24 Download gff for
BS13870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594909..19595076 | 347..514 | 100 | -> | Minus |
arm_3L | 19595142..19595160 | 328..346 | 100 | -> | Minus |
arm_3L | 19595771..19596089 | 7..327 | 98 | | Minus |
BS13870.5prime Sequence
493 bp (481 high quality bases) assembled on 2006-10-13
> BS13870.5prime
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAAGCAAGAAA
BS13870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 534 | CG9368-RB | 1..477 | 17..493 | 2360 | 99.7 | Plus |
CG9368-PA | 549 | CG9368-RA | 239..492 | 240..493 | 1245 | 99.6 | Plus |
CG9368-PA | 549 | CG9368-RA | 1..223 | 17..239 | 1115 | 100 | Plus |
CG9368-PC | 336 | CG9368-RC | 1..219 | 21..239 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 141..617 | 17..493 | 2370 | 99.8 | Plus |
CG9368-RA | 1828 | CG9368-RA | 141..632 | 17..493 | 2210 | 96.7 | Plus |
CG9368-RD | 2423 | CG9368-RD | 974..1227 | 240..493 | 1255 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602924 | 240..493 | 1255 | 99.6 | Plus |
3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:47:46 has no hits.
BS13870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:09 Download gff for
BS13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-PB | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:25 Download gff for
BS13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..614 | 9..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:19 Download gff for
BS13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 133..614 | 9..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:19 Download gff for
BS13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601765..19601976 | 9..220 | 98 | -> | Plus |
3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
3L | 19602671..19602921 | 240..490 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:25 Download gff for
BS13870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594865..19595076 | 9..220 | 98 | -> | Plus |
arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
arm_3L | 19595771..19596021 | 240..490 | 99 | | Plus |
BS13870.complete Sequence
566 bp assembled on 2006-11-01
GenBank Submission: FJ637542
> BS13870.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACTAA
AAGCTTTCTAGACCAT
BS13870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 534 | CG9368-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
CG9368-RA | 549 | CG9368-PA | 1..549 | 17..550 | 2485 | 97.3 | Plus |
CG9368-RD | 264 | CG9368-PD | 1..223 | 17..239 | 1115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-RB | 1813 | CG9368-RB | 141..674 | 17..550 | 2670 | 100 | Plus |
CG9368-RA | 1828 | CG9368-RA | 141..689 | 17..550 | 2485 | 97.3 | Plus |
CG9368-RD | 2423 | CG9368-RD | 974..1284 | 240..550 | 1555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19602671..19602981 | 240..550 | 1555 | 100 | Plus |
3L | 28110227 | 3L | 19601773..19601977 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:39:53 has no hits.
BS13870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:48 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 1..534 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:09 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 130..679 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:55 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 141..672 | 17..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:48 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 130..679 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:19 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9368-RB | 141..672 | 17..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:19 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19601773..19601976 | 17..220 | 100 | -> | Plus |
3L | 19602042..19602060 | 221..239 | 100 | -> | Plus |
3L | 19602671..19602979 | 240..548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:55 Download gff for
BS13870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19594873..19595076 | 17..220 | 100 | -> | Plus |
arm_3L | 19595142..19595160 | 221..239 | 100 | -> | Plus |
arm_3L | 19595771..19596079 | 240..548 | 100 | | Plus |
BS13870.pep Sequence
Translation from 16 to 549
> BS13870.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMD*
BS13870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9368-PB | 177 | CG9368-PB | 1..177 | 1..177 | 904 | 100 | Plus |
CG9368-PA | 182 | CG9368-PA | 1..182 | 1..177 | 883 | 96.7 | Plus |
CG9368-PD | 87 | CG9368-PD | 1..75 | 1..75 | 370 | 98.7 | Plus |