Clone BS13870 Report

Search the DGRC for BS13870

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG9368-RB
Protein status:BS13870.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13870.3prime Sequence

514 bp (475 high quality bases) assembled on 2006-10-13

> BS13870.3prime
ATGGTCTAGAAAGCTTTTAGTCCATCAGTCGAACGCCGGCTTGAACGTCA
TCGGCCATGCTGACTCCCTTCTTTTTCTTGCCTTCGCCGGCGGGCTTCTT
CTTGGTCAGGACTAGGGTTTCCGGCTCATTCTGCGACTGCTGACGCTTGC
CATTTCCGCTGGCTCCGCCACCACCACCTCCGCCGCCTCCCCCTCCGCCG
CTGTTGCTTCTCAGCTTGAAACGCGTCGTGGCCGCCGCCGCATTGTTGTT
GGCGCAATTGCATATGGCATCGAAGATCCGCACCACGAATCCTCGAGCGC
GATTCACCACCTTGCCGTTCTTAAAATTCGGTCGTTTTTCCTTGCCCTGT
TGCGATTTCTGGCTCTCAACTGCCCGCCTGTTCGCCTCCGTCTCAGCCCG
CAGGAGCACATCGTCGAGCGCCTCCCGCAACGCGGCCATGTTCTGGGGAT
TTTGCTTGAAGGCCTCAATCCGCGCCTCCAGTGACTCCGTTTCGATTCCA
TCAACGCTGTCCGG

BS13870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 534 CG9368-RB 37..534 514..17 2490 100 Minus
CG9368-PA 549 CG9368-RA 239..549 327..17 1555 100 Minus
CG9368-PA 549 CG9368-RA 37..223 514..328 935 100 Minus
CG9368-PC 336 CG9368-RC 33..219 514..328 935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 177..674 514..17 2490 100 Minus
CG9368-RA 1828 CG9368-RA 177..689 514..17 2330 97.1 Minus
CG9368-RD 2423 CG9368-RD 974..1284 327..17 1555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602981 327..17 1555 100 Minus
3L 28110227 3L 19601809..19601977 514..346 845 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:29:35 has no hits.

BS13870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:09 Download gff for BS13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 37..534 17..514 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:24 Download gff for BS13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 177..682 7..514 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:22 Download gff for BS13870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 177..682 7..514 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:22 Download gff for BS13870.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601809..19601976 347..514 100 -> Minus
3L 19602042..19602060 328..346 100 -> Minus
3L 19602671..19602989 7..327 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:24 Download gff for BS13870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594909..19595076 347..514 100 -> Minus
arm_3L 19595142..19595160 328..346 100 -> Minus
arm_3L 19595771..19596089 7..327 98   Minus

BS13870.5prime Sequence

493 bp (481 high quality bases) assembled on 2006-10-13

> BS13870.5prime
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAAGCAAGAAA

BS13870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 534 CG9368-RB 1..477 17..493 2360 99.7 Plus
CG9368-PA 549 CG9368-RA 239..492 240..493 1245 99.6 Plus
CG9368-PA 549 CG9368-RA 1..223 17..239 1115 100 Plus
CG9368-PC 336 CG9368-RC 1..219 21..239 1095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 141..617 17..493 2370 99.8 Plus
CG9368-RA 1828 CG9368-RA 141..632 17..493 2210 96.7 Plus
CG9368-RD 2423 CG9368-RD 974..1227 240..493 1255 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602924 240..493 1255 99.6 Plus
3L 28110227 3L 19601773..19601977 17..221 1025 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:47:46 has no hits.

BS13870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:09 Download gff for BS13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-PB 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:25 Download gff for BS13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..614 9..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:19 Download gff for BS13870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 133..614 9..490 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:19 Download gff for BS13870.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19601765..19601976 9..220 98 -> Plus
3L 19602042..19602060 221..239 100 -> Plus
3L 19602671..19602921 240..490 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:25 Download gff for BS13870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594865..19595076 9..220 98 -> Plus
arm_3L 19595142..19595160 221..239 100 -> Plus
arm_3L 19595771..19596021 240..490 99   Plus

BS13870.complete Sequence

566 bp assembled on 2006-11-01

GenBank Submission: FJ637542

> BS13870.complete
GAAGTTATCAGTCGACATGCATGCCAGATTTGCGGATCCCGAGCCAGCGT
CTCCGGACAGCGTTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATT
GAGGCCTTCAAGCAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCT
CGACGATGTGCTCCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTG
AGAGCCAGAAATCGCAACAGGGCAAGGAAAAACGACCGAATTTTAAGAAC
GGCAAGGTGGTGAATCGCGCTCGAGGATTCGTGGTGCGGATCTTCGATGC
CATATGCAATTGCGCCAACAACAATGCGGCGGCGGCCACGACGCGTTTCA
AGCTGAGAAGCAACAGCGGCGGAGGGGGAGGCGGCGGAGGTGGTGGTGGC
GGAGCCAGCGGAAATGGCAAGCGTCAGCAGTCGCAGAATGAGCCGGAAAC
CCTAGTCCTGACCAAGAAGAAGCCCGCCGGCGAAGGCAAGAAAAAGAAGG
GAGTCAGCATGGCCGATGACGTTCAAGCCGGCGTTCGACTGATGGACTAA
AAGCTTTCTAGACCAT

BS13870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 534 CG9368-PB 1..534 17..550 2670 100 Plus
CG9368-RA 549 CG9368-PA 1..549 17..550 2485 97.3 Plus
CG9368-RD 264 CG9368-PD 1..223 17..239 1115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-RB 1813 CG9368-RB 141..674 17..550 2670 100 Plus
CG9368-RA 1828 CG9368-RA 141..689 17..550 2485 97.3 Plus
CG9368-RD 2423 CG9368-RD 974..1284 240..550 1555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19602671..19602981 240..550 1555 100 Plus
3L 28110227 3L 19601773..19601977 17..221 1025 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:39:53 has no hits.

BS13870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:48 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 1..534 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:09 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 130..679 9..560 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:55 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 141..672 17..548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:48 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 130..679 9..560 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:19 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
CG9368-RB 141..672 17..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:19 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19601773..19601976 17..220 100 -> Plus
3L 19602042..19602060 221..239 100 -> Plus
3L 19602671..19602979 240..548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:55 Download gff for BS13870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19594873..19595076 17..220 100 -> Plus
arm_3L 19595142..19595160 221..239 100 -> Plus
arm_3L 19595771..19596079 240..548 100   Plus

BS13870.pep Sequence

Translation from 16 to 549

> BS13870.pep
MHARFADPEPASPDSVDGIETESLEARIEAFKQNPQNMAALREALDDVLL
RAETEANRRAVESQKSQQGKEKRPNFKNGKVVNRARGFVVRIFDAICNCA
NNNAAAATTRFKLRSNSGGGGGGGGGGGGASGNGKRQQSQNEPETLVLTK
KKPAGEGKKKKGVSMADDVQAGVRLMD*

BS13870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9368-PB 177 CG9368-PB 1..177 1..177 904 100 Plus
CG9368-PA 182 CG9368-PA 1..182 1..177 883 96.7 Plus
CG9368-PD 87 CG9368-PD 1..75 1..75 370 98.7 Plus