Clone Sequence Records
BS13872.3prime Sequence
345 bp (345 high quality bases) assembled on 2006-10-13
> BS13872.3prime
ATGGTCTAGAAAGCTTCTATCGGCCATACCAACCACCTCCGCGACCTCCC
CAACCTCCTCGACCGCCCCATCCTCCACCCCATCCTCCACGGCCACCCCA
TCCACCACGGCCGCCCCATCCTCCACGGCCGCCCCATCCTCCACGACCAC
CCCATCCACCGCCCCATCCTCCGAGCTGGCGGGCCTCTCGGGCTCCATCG
TTGGCATGGTTCGCTCCCTGATCGGCGACGTCCAGGAGTCCAACCACCTG
ATCGTTGTTTTCAGAATCATCCAAGGCGTAGGCACATGCCAGGCACAGGA
CACCGATGAGGGCCAGAAGTGTTAGACGCATGTCGACTGATAACT
BS13872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7738-PA | 345 | CG7738-RA | 1..256 | 270..15 | 1280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34227-RA | 485 | CG34227-RA | 63..379 | 331..15 | 1585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11248188..11248504 | 331..15 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:17:47 has no hits.
BS13872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:10 Download gff for
BS13872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7738-PA | 1..261 | 8..270 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:27 Download gff for
BS13872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..384 | 8..338 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:41 Download gff for
BS13872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..384 | 8..338 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:41 Download gff for
BS13872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11248182..11248509 | 8..338 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:27 Download gff for
BS13872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7135687..7136014 | 8..338 | 97 | | Minus |
BS13872.5prime Sequence
297 bp (286 high quality bases) assembled on 2006-10-13
> BS13872.5prime
GAAGTTATCAGTCGACATGCGTCTAACACTTCTGGCCCTCATCGGTGTCC
TGTGCCTGGCATGTGCCTACGCCTTGGATGATTCTGAAAACAACGATCAG
GTGGTTGGACTCCTGGACGTCGCCGATCAGGGAGCGAACCATGCCAACGA
TGGAGCCCGAGAGGCCCGCCAGCTCGGAGGATGGGGCGGTGGATGGGGTG
GTCGTGGAGGATGGGGCGGCCGTGGAGGATGGGGCGGCCGTGGTGGATGG
GGTGGCCGTGGAGGATGGGGTGGAGGATGGGGCGGTCGAGGAGGTTG
BS13872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7738-PA | 345 | CG7738-RA | 1..220 | 78..297 | 1100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34227-RA | 485 | CG34227-RA | 63..343 | 17..297 | 1405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11248188..11248468 | 17..297 | 1405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:54 has no hits.
BS13872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:10 Download gff for
BS13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7738-PA | 1..220 | 78..297 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:42 Download gff for
BS13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..343 | 10..297 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:09 Download gff for
BS13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..343 | 10..297 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:09 Download gff for
BS13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11248182..11248468 | 10..297 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:42 Download gff for
BS13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7135687..7135973 | 10..297 | 98 | | Plus |
BS13872.complete Sequence
347 bp assembled on 2006-11-01
> BS13872.complete
GAAGTTATCAGTCGACATGCGTCTAACACTTCTGGCCCTCATCGGTGTCC
TGTGCCTGGCATGTGCCTACGCCTTGGATGATTCTGAAAACAACGATCAG
GTGGTTGGACTCCTGGACGTCGCCGATCAGGGAGCGAACCATGCCAACGA
TGGAGCCCGAGAGGCCCGCCAGCTCGGAGGATGGGGCGGTGGATGGGGTG
GTCGTGGAGGATGGGGCGGCCGTGGAGGATGGGGCGGCCGTGGTGGATGG
GGTGGCCGTGGAGGATGGGGTGGAGGATGGGGCGGTCGAGGAGGTTGGGG
AGGTCGCGGAGGTGGTTGGTATGGCCGATAGAAGCTTTCTAGACCAT
BS13872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34227-RA | 315 | CG34227-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34227-RA | 485 | CG34227-RA | 63..379 | 17..333 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11248188..11248504 | 17..333 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:22:55 has no hits.
BS13872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:49 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 1..315 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:41 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..384 | 10..340 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:59 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 63..377 | 17..331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:50 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 57..384 | 10..340 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:14 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34227-RA | 63..377 | 17..331 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:14 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11248188..11248502 | 17..331 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:59 Download gff for
BS13872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7135693..7136007 | 17..331 | 100 | | Plus |
BS13872.pep Sequence
Translation from 16 to 330
> BS13872.pep
MRLTLLALIGVLCLACAYALDDSENNDQVVGLLDVADQGANHANDGAREA
RQLGGWGGGWGGRGGWGGRGGWGGRGGWGGRGGWGGGWGGRGGWGGRGGG
WYGR*
BS13872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34227-PA | 104 | CG34227-PA | 1..104 | 1..104 | 612 | 100 | Plus |
| CG12998-PB | 113 | CG12998-PB | 55..113 | 54..102 | 177 | 50.8 | Plus |
| CG12998-PA | 113 | CG12998-PA | 55..113 | 54..102 | 177 | 50.8 | Plus |
| CG12998-PB | 113 | CG12998-PB | 35..98 | 55..101 | 176 | 45.3 | Plus |
| CG12998-PA | 113 | CG12998-PA | 35..98 | 55..101 | 176 | 45.3 | Plus |
| Fib-PA | 344 | CG9888-PA | 56..101 | 54..100 | 175 | 74.5 | Plus |
| CG34225-PA | 104 | CG34225-PA | 4..95 | 1..101 | 173 | 41.2 | Plus |
