Clone Sequence Records
BS13874.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13874.3prime
ATGGTCTAGAAAGCTTCTAGTTCTTGTAGGTGCCCACGTAGGCTCCACAG
CTGGTGCAGGTGTGTTTGGCCGACTGGCAGGAGTCGGTGCAGTACGGAAT
GCAGCAGCAGCAAATGCCCCCCAGCATGCAGATGAGTAGGGCCAACAGGT
GGGTCTTGGTGCTGGGCTCGAACTCCACCTTCGTCTCCCTGCGGACGCCG
CAGCTCGGACAAGTGGCAACGGATGGACATTGGCCCAGGACATTGGGTGG
AGCCTGCAATATCACTCCCTGTCCCTGATGGAGCTGAGGATAGACCTGCT
GCGGTGCGCTATCATAACTGGGCGGTGCCTGGAAACCCGGAGCCTGAGGC
TGCATATTCTCGTATTGAAAGTTCTTCTCCATGTCGACTGATAACT
BS13874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-PA | 366 | CG4250-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 616 | CG4250-RA | 54..422 | 382..14 | 1845 | 100 | Minus |
| CG4250-RB | 655 | CG4250-RB | 222..461 | 253..14 | 1200 | 100 | Minus |
| CG4250-RB | 655 | CG4250-RB | 54..183 | 382..253 | 650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22663988..22664122 | 253..119 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 22663745..22663874 | 382..253 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 22664174..22664280 | 120..14 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:09 has no hits.
BS13874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:12 Download gff for
BS13874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:22 Download gff for
BS13874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..427 | 7..392 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:15 Download gff for
BS13874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..427 | 7..392 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:15 Download gff for
BS13874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22663736..22663874 | 253..392 | 97 | -> | Minus |
| 2R | 22663989..22664121 | 120..252 | 100 | -> | Minus |
| 2R | 22664175..22664285 | 7..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:22 Download gff for
BS13874.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18551241..18551379 | 253..392 | 97 | -> | Minus |
| arm_2R | 18551494..18551626 | 120..252 | 100 | -> | Minus |
| arm_2R | 18551680..18551790 | 7..119 | 97 | | Minus |
BS13874.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13874.5prime
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACTAGAAGCTTTCTAGACC
BS13874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-PA | 366 | CG4250-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 616 | CG4250-RA | 54..422 | 17..385 | 1845 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 222..461 | 146..385 | 1200 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 54..183 | 17..146 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22663988..22664122 | 146..280 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22663745..22663874 | 17..146 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 22664174..22664280 | 279..385 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:26 has no hits.
BS13874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:12 Download gff for
BS13874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:24 Download gff for
BS13874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..427 | 7..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:00 Download gff for
BS13874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..427 | 7..392 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:00 Download gff for
BS13874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22663736..22663874 | 7..146 | 97 | -> | Plus |
| 2R | 22663989..22664121 | 147..279 | 100 | -> | Plus |
| 2R | 22664175..22664285 | 280..392 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:24 Download gff for
BS13874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18551241..18551379 | 7..146 | 97 | -> | Plus |
| arm_2R | 18551494..18551626 | 147..279 | 100 | -> | Plus |
| arm_2R | 18551680..18551790 | 280..392 | 97 | | Plus |
BS13874.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ637543
> BS13874.complete
GAAGTTATCAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGC
CTCAGGCTCCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAG
CAGGTCTATCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCC
ACCCAATGTCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCG
GCGTCCGCAGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCAC
CTGTTGGCCCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCAT
TCCGTACTGCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCT
GTGGAGCCTACGTGGGCACCTACAAGAACTAGAAGCTTTCTAGACCAT
BS13874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 366 | CG4250-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
| CG4250-RB | 405 | CG4250-PB | 169..405 | 146..382 | 1185 | 100 | Plus |
| CG4250-RB | 405 | CG4250-PB | 1..130 | 17..146 | 650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 616 | CG4250-RA | 54..422 | 17..385 | 1845 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 222..461 | 146..385 | 1200 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 54..183 | 17..146 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22663988..22664122 | 146..280 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22663745..22663874 | 17..146 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 22664174..22664280 | 279..385 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:05:37 has no hits.
BS13874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:51 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:11 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 49..431 | 7..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:09 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 54..419 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:51 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 49..431 | 7..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:05 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 54..419 | 17..382 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:05 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22663745..22663874 | 17..146 | 100 | -> | Plus |
| 2R | 22663989..22664121 | 147..279 | 100 | -> | Plus |
| 2R | 22664175..22664277 | 280..382 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:09 Download gff for
BS13874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18551250..18551379 | 17..146 | 100 | -> | Plus |
| arm_2R | 18551494..18551626 | 147..279 | 100 | -> | Plus |
| arm_2R | 18551680..18551782 | 280..382 | 100 | | Plus |
BS13874.pep Sequence
Translation from 16 to 381
> BS13874.pep
MEKNFQYENMQPQAPGFQAPPSYDSAPQQVYPQLHQGQGVILQAPPNVLG
QCPSVATCPSCGVRRETKVEFEPSTKTHLLALLICMLGGICCCCIPYCTD
SCQSAKHTCTSCGAYVGTYKN*
BS13874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-PA | 121 | CG4250-PA | 1..121 | 1..121 | 681 | 100 | Plus |
| CG4250-PB | 134 | CG4250-PB | 1..134 | 1..121 | 657 | 90.3 | Plus |
| CG30273-PB | 128 | CG30273-PB | 2..127 | 6..121 | 238 | 38.1 | Plus |
| CG30269-PB | 144 | CG30269-PB | 32..141 | 19..119 | 218 | 37.3 | Plus |
| CG30269-PA | 144 | CG30269-PA | 32..141 | 19..119 | 218 | 37.3 | Plus |
