Clone BS13876 Report

Search the DGRC for BS13876

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-c-RA
Protein status:BS13876.pep: full length peptide match
Sequenced Size:1349

Clone Sequence Records

BS13876.complete Sequence

1349 bp assembled on 2009-12-07

GenBank Submission: KX802310

> BS13876.complete
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCG
CCGTTTCACCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGA
ATATTGTTGTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTAC
ATTCCGGATTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGA
CAAATCCTACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATG
GTGATTTCAATGTGGGCGGCGTGAACTTCCAGTGGACGGATGGCGTTTTT
GGGCTGGCCGTGGGCCCAATGAATCCAGATCACTCCAAGGACATTTATTT
CCATGCCCTGGCCAGTACCAAGGAGTTCAAGGTTTCGAACCGCGTGCTGC
AAAACGAATCACACGTGACCGCTGGCGATTCGTATTACGATTTTAAATAC
GTTGGTGACCGTGGCATGAATGGCCAGTCCACCGCCGAGGTCTTTGACCC
CGAGACCGGCGTCATCTTCTATACGCAGGTGAACAAAGACGCCATTGCTT
GTTGGAACATCAAGCGTCCATACACTCCGGACACCCAGGGGCTAATCGAT
TCCGATTCGCACACTCTGGTCTTTCCAAATGACATGAAAATCGACAATGA
AGGCACTATTTGGGTGCTGTCCGACAAGATGCCGACATATTTGTACAAGG
AACTCGATCCCTCGGCCGTCAACTATCGTATTTTGATGGGCCAGAACCGC
GATCTCATCAAGGGTACACCATGCGAAATGTGAAAGCTTTCTAGACCAT

BS13876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1317 CG4182-PB 1..1317 17..1333 6585 100 Plus
yellow-c-RA 1317 CG4182-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 171..1487 17..1333 6585 100 Plus
yellow-c-RA 1522 CG4182-RA 93..1409 17..1333 6585 100 Plus
CIAPIN1-RA 2358 CG4180-RA 977..1654 1333..656 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037051..15037728 656..1333 3390 100 Plus
2L 23513712 2L 15036584..15036993 248..657 2050 100 Plus
2L 23513712 2L 15035564..15035796 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:52:25 has no hits.

BS13876.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:33 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 94..1409 17..1332 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:09 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..1408 17..1332 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:31 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 94..1409 17..1332 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:53 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..1408 17..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:53 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15035564..15035796 17..249 100 -> Plus
2L 15036586..15036991 250..655 100 -> Plus
2L 15037051..15037727 656..1332 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:09 Download gff for BS13876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15035564..15035796 17..249 100 -> Plus
arm_2L 15036586..15036991 250..655 100 -> Plus
arm_2L 15037051..15037727 656..1332 100   Plus

BS13876.3prime Sequence

543 bp (541 high quality bases) assembled on 2006-10-13

> BS13876.3prime
ATGGTCTAGAAAGCTTTCACATTTCGCATGGTGTACCCTTGATGAGATCG
CGGTTCTGGCCCATCAAAATACGATAGTTGACGGCCGAGGGATCGAGTTC
CTTGTACAAATATGTCGGCATCTTGTCGGACAGCACCCAAATAGTGCCTT
CATTGTCGATTTTCATGTCATTTGGAAAGACCAGAGTGTGCGAATCGGAA
TCGATTAGCCCCTGGGTGTCCGGAGTGTATGGACGCTTGATGTTCCAACA
AGCAATGGCGTCTTTGTTCACCTGCGTATAGAAGATGACGCCGGTCTCGG
GGTCAAAGACCTCGGCGGTGGACTGGCCATTCATGCCACGGTCACCAACG
TATTTAAAATCGTAATACGAATCGCCAGCGGTCACGTGTGATTCGTTTTG
CAGCACGCGGTTCGAAACCTTGAACTCCTTGGTACTGGCCAGGGCATGGA
AATAAATGTCCTTGGAGTGATCTGGATTCATTGGGCCCACGGCCAGCCCA
AAAACGCCATCCGTCCACTGGAAGTTCACGCCGCCCACATTGA

BS13876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4182-PA 1317 yellow-c-RA 791..1317 543..17 2635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 961..1487 543..17 2635 100 Minus
yellow-c-RA 1522 CG4182-RA 883..1409 543..17 2635 100 Minus
CIAPIN1-RA 2358 CG4180-RA 977..1503 17..543 2635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15037202..15037728 543..17 2635 100 Minus
Blast to na_te.dros performed 2015-02-11 22:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 5083..5135 189..138 109 69.8 Minus

BS13876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:12 Download gff for BS13876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 792..1317 17..542 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:50 Download gff for BS13876.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 971..1502 11..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:37 Download gff for BS13876.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 971..1502 11..542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:37 Download gff for BS13876.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037203..15037734 11..542 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:50 Download gff for BS13876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15037203..15037734 11..542 99   Minus

BS13876.5prime Sequence

620 bp (544 high quality bases) assembled on 2006-10-13

> BS13876.5prime
GAAGTTATCAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAA
TGGTGTGCCTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAG
GAGAAGTTCTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGC
CGAGGCGGAGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGC
CGCTGGGCGTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGA
TGGAAGGCTGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGAC
GGAGAAGTCGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGC
TGCCCATCGATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGT
CTGGACGCGGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTC
CACTGTCATTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGT
GGGTGCTCGATACTGGCTTGGCCGACATCCTGNGCAGTCCCAAGCAGATT
ACGCCCAATTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCC
CCGTTTCACCATTCCCGCTG

BS13876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4182-PA 1317 yellow-c-RA 1..604 17..620 2976 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-RB 1600 CG4182-RB 171..774 17..620 2994 99.7 Plus
yellow-c-RA 1522 CG4182-RA 93..696 17..620 2994 99.7 Plus
CIAPIN1-RA 2358 CG4180-RA 1749..2121 620..248 1839 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15036584..15036956 248..620 1839 99.5 Plus
2L 23513712 2L 15035564..15035796 17..249 1165 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:02:02 has no hits.

BS13876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:13 Download gff for BS13876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4182-PA 1..604 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:16 Download gff for BS13876.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..696 17..620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:06 Download gff for BS13876.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-c-RA 93..696 17..620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:06 Download gff for BS13876.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15035564..15035796 17..249 100 -> Plus
2L 15036586..15036956 250..620 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:16 Download gff for BS13876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15035564..15035796 17..249 100 -> Plus
arm_2L 15036586..15036956 250..620 99   Plus

BS13876.pep Sequence

Translation from 16 to 1332

> BS13876.pep
MNPLGMLSLGLMVCLIGAFSRIASAKLEEKFSWKQLAFDWPTPEAEAEAK
SNGHYIVENNLPLGVERWQNRIFVTVPRWKAGVAATLNYIDINSTEKSPK
LHPYPSWEANKLPIDVQPQDQKTPSGGRLDADKAQDAGIQLKDNSTVIST
FRIQVDVCDRLWVLDTGLADILGSPKQITPNSILVFDLKTDTLLRRFTIP
ADQTKEDSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRV
KHNFFHFDPLHGDFNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALAS
TKEFKVSNRVLQNESHVTAGDSYYDFKYVGDRGMNGQSTAEVFDPETGVI
FYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWV
LSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCEM*

BS13876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-c-PB 438 CG4182-PB 1..438 1..438 2339 100 Plus
yellow-c-PA 438 CG4182-PA 1..438 1..438 2339 100 Plus
yellow-b-PB 453 CG17914-PB 1..404 6..438 840 37.6 Plus
yellow-b-PA 453 CG17914-PA 1..404 6..438 840 37.6 Plus
y-PA 541 CG3757-PA 21..407 23..438 830 40.3 Plus