Clone Sequence Records
BS13877.3prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-13
> BS13877.3prime
ATGGTCTAGAAAGCTTTTAGGACTGCTTGGCCTGCCACTCCGTCCATGAT
CCGGCATAAGCCTTGGCGTTGGTGAAGCCCAGCGTGCTGGCCAGATTGGC
CGCCCGGGCAGCGCGTCCTCCCGCCTTGCACGAGAAGATCAAGACCGCAT
CGACGGCCGGCTTGACGCGTCCATAAGTCTGGGCGAAGTCCTCCTCCGGC
AAGTTCAGTGCCTTCTCCAGCTCGCTCAGTGGAATGTTTATGCTGGCGGG
CAGGACGCCCGTCTCCTTCAGCTCCGACTCGTTGCGCACATCGAACAGGT
ACTTCTCCGGGTGGTTTGGAATGTCCTTGACTTCCTCGTAGGTGGCCATG
TCGACTGATAACT
BS13877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 333 | CG12279-RA | 1..333 | 349..17 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..402 | 349..15 | 1675 | 100 | Minus |
mus308-RA | 6420 | CG6019-RA | 6324..6377 | 15..68 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 234..69 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 12705161..12705281 | 349..229 | 605 | 100 | Minus |
3R | 32079331 | 3R | 12705566..12705619 | 68..15 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:47:58 has no hits.
BS13877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:13 Download gff for
BS13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:31 Download gff for
BS13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..409 | 6..349 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:07 Download gff for
BS13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..409 | 6..349 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:07 Download gff for
BS13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705344..12705503 | 69..228 | 100 | -> | Minus |
3R | 12705566..12705626 | 6..68 | 95 | | Minus |
3R | 12705163..12705281 | 229..347 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:31 Download gff for
BS13877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530885..8531003 | 229..347 | 100 | -> | Minus |
arm_3R | 8531066..8531225 | 69..228 | 100 | -> | Minus |
arm_3R | 8531288..8531348 | 6..68 | 95 | | Minus |
BS13877.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-13
> BS13877.5prime
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCTAAA
AGCTTTCTAGACC
BS13877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 333 | CG12279-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..402 | 17..351 | 1675 | 100 | Plus |
mus308-RA | 6420 | CG6019-RA | 6324..6377 | 351..298 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 132..297 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 12705161..12705281 | 17..137 | 605 | 100 | Plus |
3R | 32079331 | 3R | 12705566..12705619 | 298..351 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:01:54 has no hits.
BS13877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:14 Download gff for
BS13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:07 Download gff for
BS13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..411 | 17..363 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:57 Download gff for
BS13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..411 | 17..363 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:57 Download gff for
BS13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705163..12705281 | 19..137 | 100 | -> | Plus |
3R | 12705344..12705503 | 138..297 | 100 | -> | Plus |
3R | 12705566..12705628 | 298..363 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:07 Download gff for
BS13877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530885..8531003 | 19..137 | 100 | -> | Plus |
arm_3R | 8531066..8531225 | 138..297 | 100 | -> | Plus |
arm_3R | 8531288..8531350 | 298..363 | 92 | | Plus |
BS13877.complete Sequence
365 bp assembled on 2006-11-01
GenBank Submission: FJ637544
> BS13877.complete
GAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCAAGGACATTCCAA
ACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAGTCGGAGCTGAAG
GAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACTGAGCGAGCTGGA
GAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGACTTATGGACGCG
TCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGCAAGGCGGGAGGA
CGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGGCTTCACCAACGC
CAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCAAGCAGTCCTAAA
AGCTTTCTAGACCAT
BS13877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 333 | CG12279-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-RA | 601 | CG12279-RA | 68..402 | 17..351 | 1675 | 100 | Plus |
mus308-RA | 6420 | CG6019-RA | 6324..6377 | 351..298 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12705338..12705503 | 132..297 | 815 | 99.4 | Plus |
3R | 32079331 | 3R | 12705161..12705281 | 17..137 | 605 | 100 | Plus |
3R | 32079331 | 3R | 12705566..12705619 | 298..351 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:30 has no hits.
BS13877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:52 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:13 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..409 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:09 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..398 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:52 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..409 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:00 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12279-RA | 68..398 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:00 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12705161..12705281 | 17..137 | 100 | -> | Plus |
3R | 12705344..12705503 | 138..297 | 100 | -> | Plus |
3R | 12705566..12705615 | 298..347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:09 Download gff for
BS13877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8530883..8531003 | 17..137 | 100 | -> | Plus |
arm_3R | 8531066..8531225 | 138..297 | 100 | -> | Plus |
arm_3R | 8531288..8531337 | 298..347 | 100 | | Plus |
BS13877.pep Sequence
Translation from 16 to 348
> BS13877.pep
MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKALNL
PEEDFAQTYGRVKPAVDAVLIFSCKAGGRAARAANLASTLGFTNAKAYAG
SWTEWQAKQS*
BS13877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12279-PA | 110 | CG12279-PA | 1..110 | 1..110 | 566 | 100 | Plus |
Hsp67Bb-PD | 111 | CG4456-PD | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PC | 111 | CG4456-PC | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PB | 111 | CG4456-PB | 1..109 | 1..109 | 326 | 53.2 | Plus |
Hsp67Bb-PA | 111 | CG4456-PA | 1..109 | 1..109 | 326 | 53.2 | Plus |