Clone Sequence Records
BS13878.5prime Sequence
491 bp (457 high quality bases) assembled on 2006-10-13
> BS13878.5prime
GAAGTTATCAGTCGACATGCTCGACAAATTCAACACAAACGCATTCATAT
CGTTTGGACTGGGATTCATACTGATGTGGCTGAGCGAAGCCACGGAAGCC
CACATGAACTACACAGCCAAGCCGCGAGTAGTTCTTCCGCCTAATTATGT
CAAGGAAATACGACCGCCCTCGAAGAAGGGCTCACCAGTGATAGTAGACT
TTAGCATATTCGTTGTAGATATTAACTCAATTAACGTAGAGGATATGGAC
TTTAGAGTAGACATGTTTATACATCAGCGCTGGCTGGAGTCGCGTCTGGA
GATCCCAGATGACATATTCGAGGAGGGCGACGACTACGTGACGCTGCTTC
CAGAGGTCTTTGAGAATTTTTTGGCAGCCGGATCCGTACTTTCTTAATTC
CAAAAATTGCCGAAATAGCGACACTGACCCCACAAGTTCACGTCAGTGAC
GCTCTACAAAAAACAAACGGTGCGCTATGCGGCCCGGATGC
BS13878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-PA | 1350 | CG12344-RA | 1..472 | 17..491 | 2155 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-RD | 2719 | CG12344-RD | 155..627 | 16..491 | 2245 | 98.5 | Plus |
| CG12344-RC | 2731 | CG12344-RC | 155..627 | 16..491 | 2245 | 98.5 | Plus |
| CG12344-RB | 2831 | CG12344-RB | 267..739 | 16..491 | 2245 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10831384..10831534 | 405..254 | 710 | 99.3 | Minus |
| 2R | 25286936 | 2R | 10831614..10831714 | 255..155 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 10833125..10833202 | 155..78 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 10833807..10833870 | 79..16 | 320 | 100 | Minus |
| 2R | 25286936 | 2R | 10829883..10829961 | 491..412 | 290 | 93.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:22:44 has no hits.
BS13878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:14 Download gff for
BS13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-PA | 1..472 | 17..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:50:13 Download gff for
BS13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RB | 261..739 | 9..491 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:47:52 Download gff for
BS13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RB | 261..739 | 9..491 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:47:52 Download gff for
BS13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10831614..10831713 | 156..255 | 100 | <- | Minus |
| 2R | 10833125..10833201 | 79..155 | 100 | <- | Minus |
| 2R | 10833808..10833873 | 9..78 | 94 | | Minus |
| 2R | 10829883..10829960 | 413..491 | 93 | <- | Minus |
| 2R | 10831378..10831532 | 256..412 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:50:13 Download gff for
BS13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6717388..6717465 | 413..491 | 93 | <- | Minus |
| arm_2R | 6718883..6719037 | 256..412 | 98 | <- | Minus |
| arm_2R | 6719119..6719218 | 156..255 | 100 | <- | Minus |
| arm_2R | 6720630..6720706 | 79..155 | 100 | <- | Minus |
| arm_2R | 6721313..6721378 | 9..78 | 94 | | Minus |
BS13878.complete Sequence
1382 bp assembled on 2010-01-09
GenBank Submission: KX800879
> BS13878.complete
GAAGTTATCAGTCGACATGCTCGACAAATTCAACACAAACGCATTCATAT
CGTTTGGACTGGGATTCATACTGATGTGGCTGAGCGAAGCCACGGAAGCC
CACATGAACTACACAGCCAAGCCGCGAGTAGTTCTTCCGCCTAATTATGT
CAAGGAAATACGACCGCCCTCGAAGAAGGGCTCACCAGTGATAGTAGACT
TTAGCATATTCGTTGTAGATATTAACTCAATTAACGTAGAGGATATGGAC
TTTAGAGTAGACATGTTTATACATCAGCGCTGGCTGGAGTCGCGTCTGGA
GATCCCAGATGACATATTCGAGGAGGGCGACGACTACGTGACGCTGCTTC
CAGAGGTCTTTGAGAATTTTTGGCAGCCGGATCCGTACTTTCTTAATTCC
AAAATTGCCGAAATAGCGACACTGACCCACAAGTTCACGTCGGTGACGCT
CTACAAGAACAAAACGGTGCGCTATGCGGCCCGGATGCATGCGATCATCG
CCTGCCAGATGGAGTTCCAGCTGTACCCCATGGACATCCAGGTGTGTCCC
ATCTACATCGAGAGCTTCTCGTCGAACAATCAAAAGGTTAAGCTGCGCTG
GTCCGACTCCGGGGTGACCCTCAATCCGGAACTGAAGCTGCTGCAGTACA
ATCTGGGCCAGCCGCTGGAACTGGAGGAGAGCGACGGCTACATGCCGGAG
AAGGTGGGGAACTTCTCCCGCCTCACCGTATACTTCCGCTTCGAGCGCCA
GATTGGCCACCACCTCATCCAGACCTTCGCCCCCTCATCGCTGGTGGTGA
TGCTGTCCTGGTTCAGCTTCTGGCTGGGACTGGACGCCATTCCGGGGCGC
GTAACGCTACTGGTGACCTGCATGCTGACCCTGGTGACCATGTTTACGGG
CGCCGACATTCCGCCAGTGGCCTACGTTAAGGCACTGGATCTCTGGATGG
CCGGGTGCATGCTGTCCGTGTTCGCCGCGCTGGCCGAGTTCGTGGTGGTG
AAAGTGCTGGACGTGCAGTACCAGTACCAGGTGAACCGCATACCCAAGGT
ACTGCCCATGCGCATCAGCAATATGGAGAAGGGTCAGTGTGCGACGGTGG
CCAGTTGGGAGGGCGGAGCGGTGCGGTCGCGGAAGGCCACTCAGACGCCC
ACGACACCGGGCCAGACATCGCTCCAGGGTAACGGCGGACCGCCGAAGCC
AGCAAGACGTCAAAGTCTACTTTCCGTGGCGTGGACGGATACGGATACCG
GCGTGGAGAAGATCATGTGGCGAGAGATCGACAAGGTGTCCCGCGCCGTA
TTCCCCATCCTGTTCTTTGTGTTTGTGCTCCTGTACTGGCCGATACTGCT
GATGAAGTCGTCCTAGAAGCTTTCTAGACCAT
BS13878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-RC | 1350 | CG12344-PC | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| CG12344-RA | 1350 | CG12344-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| CG12344-RD | 1338 | CG12344-PD | 1..1338 | 17..1366 | 6535 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-RC | 2731 | CG12344-RC | 155..1505 | 16..1366 | 6755 | 100 | Plus |
| CG12344-RA | 2843 | CG12344-RA | 267..1617 | 16..1366 | 6755 | 100 | Plus |
| CG12344-RD | 2719 | CG12344-RD | 155..1493 | 16..1366 | 6540 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10829381..10829746 | 932..567 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 10828656..10828858 | 1366..1164 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 10829805..10829961 | 566..410 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10831378..10831534 | 410..254 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10829138..10829268 | 1060..930 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 10828955..10829060 | 1165..1060 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 10831614..10831714 | 255..155 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 10833125..10833202 | 155..78 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 10833807..10833870 | 79..16 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:55:57 has no hits.
BS13878.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:54 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 268..1617 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:40 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 268..1617 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:43 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 268..1617 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:00 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 268..1617 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:00 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10833808..10833869 | 17..78 | 100 | | Minus |
| 2R | 10828656..10828856 | 1166..1366 | 100 | <- | Minus |
| 2R | 10828955..10829059 | 1061..1165 | 100 | <- | Minus |
| 2R | 10829138..10829266 | 932..1060 | 100 | <- | Minus |
| 2R | 10829382..10829746 | 567..931 | 100 | <- | Minus |
| 2R | 10829805..10829960 | 411..566 | 100 | <- | Minus |
| 2R | 10831378..10831532 | 256..410 | 100 | <- | Minus |
| 2R | 10831614..10831713 | 156..255 | 100 | <- | Minus |
| 2R | 10833125..10833201 | 79..155 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:40 Download gff for
BS13878.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6717310..6717465 | 411..566 | 100 | <- | Minus |
| arm_2R | 6718883..6719037 | 256..410 | 100 | <- | Minus |
| arm_2R | 6719119..6719218 | 156..255 | 100 | <- | Minus |
| arm_2R | 6720630..6720706 | 79..155 | 100 | <- | Minus |
| arm_2R | 6721313..6721374 | 17..78 | 100 | | Minus |
| arm_2R | 6716643..6716771 | 932..1060 | 100 | <- | Minus |
| arm_2R | 6716887..6717251 | 567..931 | 100 | <- | Minus |
| arm_2R | 6716161..6716361 | 1166..1366 | 100 | <- | Minus |
| arm_2R | 6716460..6716564 | 1061..1165 | 100 | <- | Minus |
BS13878.pep Sequence
Translation from 16 to 1365
> BS13878.pep
MLDKFNTNAFISFGLGFILMWLSEATEAHMNYTAKPRVVLPPNYVKEIRP
PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDI
FEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKT
VRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSGV
TLNPELKLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHL
IQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGADIPP
VAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRI
SNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQS
LLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLMKSS*
BS13878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-PC | 449 | CG12344-PC | 1..449 | 1..449 | 2353 | 100 | Plus |
| CG12344-PA | 449 | CG12344-PA | 1..449 | 1..449 | 2353 | 100 | Plus |
| CG12344-PD | 445 | CG12344-PD | 1..445 | 1..449 | 2318 | 99.1 | Plus |
| CG12344-PB | 445 | CG12344-PB | 1..445 | 1..449 | 2318 | 99.1 | Plus |
| HisCl1-PB | 422 | CG14723-PB | 62..422 | 40..445 | 503 | 30.3 | Plus |
