Clone BS13879 Report

Search the DGRC for BS13879

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:79
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-6-RA
Protein status:BS13879.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13879.5prime Sequence

501 bp (476 high quality bases) assembled on 2006-10-13

> BS13879.5prime
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
A

BS13879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1442-PA 522 CG1442-RA 1..485 17..501 2425 100 Plus
CG32859-PA 1290 CG32859-RA 922..954 284..316 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 110..598 13..501 2430 99.8 Plus
eIF4E-6-RB 686 CG1442-RB 120..608 13..501 2430 99.8 Plus
eIF4E-6-RA 677 CG1442-RA 111..599 13..501 2430 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026517..29027005 501..13 2430 99.8 Minus
3L 28110227 3L 9400583..9400713 300..170 190 76.3 Minus
Blast to na_te.dros performed on 2015-02-12 11:54:12 has no hits.

BS13879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:15 Download gff for BS13879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 1..482 17..498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:51 Download gff for BS13879.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..596 1..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:36 Download gff for BS13879.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..596 1..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:36 Download gff for BS13879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29026520..29027014 1..498 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:51 Download gff for BS13879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852242..24852736 1..498 98   Minus

BS13879.3prime Sequence

487 bp (459 high quality bases) assembled on 2006-10-13

> BS13879.3prime
ATGGTCTAGAAAGCTTTTAGCACTGTTCGTTACACTCATCGCCCGCGTCT
GCCTTTGTCCATACGGAGATTTTGTTGATATTTTTGCGAATCCTGACAAA
AGCCCCACAAATCTGATCGCAGTGATCGCAGGCCTCGCCAATCATGCAAA
GAAGCACGTCCAGCCAAGTTTTGTCCAGTTCGGCTGTGGACCTTTTATCC
ACTTTATATGTCCAACGACCTCCGCCCTTGTTCGGCGGATCCTCCCACAT
GGGGCGAATGCCCTTCTTGAAGAGCATGTAATCACAGCCGCGGTTGAGCT
TGGATGGCGTATCGATGCGGAAATACAGGTTCCAGAAGTCCTCGACGGTA
TTGAAGCTGTCAATCTCCTTCAGCATGTCCTCCCATGATATTTCAGGGTC
GTACTTTACGCCCCACAGGGTCCATGTGTTCTGCAGCCGGTGCTTGTTTG
TGGCACCCAACGATGCCAGTTTGTTATTATCCCAAAA

BS13879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1442-PA 522 CG1442-RA 57..522 482..17 2330 100 Minus
CG32859-PA 1290 CG32859-RA 922..954 271..239 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 170..637 482..15 2340 100 Minus
eIF4E-6-RB 686 CG1442-RB 180..647 482..15 2340 100 Minus
eIF4E-6-RA 677 CG1442-RA 171..638 482..15 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026478..29026945 15..482 2340 100 Plus
3L 28110227 3L 9400583..9400713 255..385 190 76.3 Plus
Blast to na_te.dros performed on 2015-02-13 07:20:51 has no hits.

BS13879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:15 Download gff for BS13879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1442-PA 56..522 17..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:59 Download gff for BS13879.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 170..638 15..483 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:36 Download gff for BS13879.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 170..638 15..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:36 Download gff for BS13879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29026478..29026945 15..483 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:59 Download gff for BS13879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852200..24852667 15..483 99   Plus

BS13879.complete Sequence

554 bp assembled on 2007-10-17

GenBank Submission: KX804360

> BS13879.complete
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCTAAAAGCTTTCTAGA
CCAT

BS13879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 522 CG1442-PC 1..522 17..538 2610 100 Plus
eIF4E-6-RB 522 CG1442-PB 1..522 17..538 2610 100 Plus
eIF4E-6-RA 522 CG1442-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-RC 676 CG1442-RC 110..637 13..540 2625 99.8 Plus
eIF4E-6-RB 686 CG1442-RB 120..647 13..540 2625 99.8 Plus
eIF4E-6-RA 677 CG1442-RA 111..638 13..540 2625 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29026478..29027005 540..13 2625 99.8 Minus
3L 28110227 3L 9400583..9400713 300..170 190 76.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:17:56 has no hits.

BS13879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:57 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:59 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 102..638 1..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:24:23 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 115..634 17..536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:21 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 115..634 17..536 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:13 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-6-RA 115..634 17..536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:13 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29026482..29027001 17..536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:24:23 Download gff for BS13879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24852204..24852723 17..536 100   Minus

BS13879.pep Sequence

Translation from 16 to 537

> BS13879.pep
MENLRQTKESSEFKMGTSLDNNKLASLGATNKHRLQNTWTLWGVKYDPEI
SWEDMLKEIDSFNTVEDFWNLYFRIDTPSKLNRGCDYMLFKKGIRPMWED
PPNKGGGRWTYKVDKRSTAELDKTWLDVLLCMIGEACDHCDQICGAFVRI
RKNINKISVWTKADAGDECNEQC*

BS13879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-6-PC 173 CG1442-PC 1..173 1..173 964 100 Plus
eIF4E-6-PB 173 CG1442-PB 1..173 1..173 964 100 Plus
eIF4E-6-PA 173 CG1442-PA 1..173 1..173 964 100 Plus
eIF-4E-PC 248 CG4035-PC 69..204 32..168 448 60.6 Plus
eIF-4E-PI 259 CG4035-PI 80..215 32..168 448 60.6 Plus