Clone Sequence Records
BS13879.5prime Sequence
501 bp (476 high quality bases) assembled on 2006-10-13
> BS13879.5prime
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
A
BS13879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1442-PA | 522 | CG1442-RA | 1..485 | 17..501 | 2425 | 100 | Plus |
CG32859-PA | 1290 | CG32859-RA | 922..954 | 284..316 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 110..598 | 13..501 | 2430 | 99.8 | Plus |
eIF4E-6-RB | 686 | CG1442-RB | 120..608 | 13..501 | 2430 | 99.8 | Plus |
eIF4E-6-RA | 677 | CG1442-RA | 111..599 | 13..501 | 2430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026517..29027005 | 501..13 | 2430 | 99.8 | Minus |
3L | 28110227 | 3L | 9400583..9400713 | 300..170 | 190 | 76.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:54:12 has no hits.
BS13879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:15 Download gff for
BS13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 1..482 | 17..498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:51 Download gff for
BS13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..596 | 1..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:36 Download gff for
BS13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..596 | 1..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:36 Download gff for
BS13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026520..29027014 | 1..498 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:51 Download gff for
BS13879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852242..24852736 | 1..498 | 98 | | Minus |
BS13879.3prime Sequence
487 bp (459 high quality bases) assembled on 2006-10-13
> BS13879.3prime
ATGGTCTAGAAAGCTTTTAGCACTGTTCGTTACACTCATCGCCCGCGTCT
GCCTTTGTCCATACGGAGATTTTGTTGATATTTTTGCGAATCCTGACAAA
AGCCCCACAAATCTGATCGCAGTGATCGCAGGCCTCGCCAATCATGCAAA
GAAGCACGTCCAGCCAAGTTTTGTCCAGTTCGGCTGTGGACCTTTTATCC
ACTTTATATGTCCAACGACCTCCGCCCTTGTTCGGCGGATCCTCCCACAT
GGGGCGAATGCCCTTCTTGAAGAGCATGTAATCACAGCCGCGGTTGAGCT
TGGATGGCGTATCGATGCGGAAATACAGGTTCCAGAAGTCCTCGACGGTA
TTGAAGCTGTCAATCTCCTTCAGCATGTCCTCCCATGATATTTCAGGGTC
GTACTTTACGCCCCACAGGGTCCATGTGTTCTGCAGCCGGTGCTTGTTTG
TGGCACCCAACGATGCCAGTTTGTTATTATCCCAAAA
BS13879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1442-PA | 522 | CG1442-RA | 57..522 | 482..17 | 2330 | 100 | Minus |
CG32859-PA | 1290 | CG32859-RA | 922..954 | 271..239 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 170..637 | 482..15 | 2340 | 100 | Minus |
eIF4E-6-RB | 686 | CG1442-RB | 180..647 | 482..15 | 2340 | 100 | Minus |
eIF4E-6-RA | 677 | CG1442-RA | 171..638 | 482..15 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026478..29026945 | 15..482 | 2340 | 100 | Plus |
3L | 28110227 | 3L | 9400583..9400713 | 255..385 | 190 | 76.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:20:51 has no hits.
BS13879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:15 Download gff for
BS13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1442-PA | 56..522 | 17..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:42:59 Download gff for
BS13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 170..638 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:36 Download gff for
BS13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 170..638 | 15..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:36 Download gff for
BS13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026478..29026945 | 15..483 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:42:59 Download gff for
BS13879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852200..24852667 | 15..483 | 99 | | Plus |
BS13879.complete Sequence
554 bp assembled on 2007-10-17
GenBank Submission: KX804360
> BS13879.complete
GAAGTTATCAGTCGACATGGAAAACTTAAGGCAAACCAAAGAGTCATCGG
AATTTAAAATGGGGACTTCTCTGGATAATAACAAACTGGCATCGTTGGGT
GCCACAAACAAGCACCGGCTGCAGAACACATGGACCCTGTGGGGCGTAAA
GTACGACCCTGAAATATCATGGGAGGACATGCTGAAGGAGATTGACAGCT
TCAATACCGTCGAGGACTTCTGGAACCTGTATTTCCGCATCGATACGCCA
TCCAAGCTCAACCGCGGCTGTGATTACATGCTCTTCAAGAAGGGCATTCG
CCCCATGTGGGAGGATCCGCCGAACAAGGGCGGAGGTCGTTGGACATATA
AAGTGGATAAAAGGTCCACAGCCGAACTGGACAAAACTTGGCTGGACGTG
CTTCTTTGCATGATTGGCGAGGCCTGCGATCACTGCGATCAGATTTGTGG
GGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCTCCGTATGGACAA
AGGCAGACGCGGGCGATGAGTGTAACGAACAGTGCTAAAAGCTTTCTAGA
CCAT
BS13879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 522 | CG1442-PC | 1..522 | 17..538 | 2610 | 100 | Plus |
eIF4E-6-RB | 522 | CG1442-PB | 1..522 | 17..538 | 2610 | 100 | Plus |
eIF4E-6-RA | 522 | CG1442-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-RC | 676 | CG1442-RC | 110..637 | 13..540 | 2625 | 99.8 | Plus |
eIF4E-6-RB | 686 | CG1442-RB | 120..647 | 13..540 | 2625 | 99.8 | Plus |
eIF4E-6-RA | 677 | CG1442-RA | 111..638 | 13..540 | 2625 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29026478..29027005 | 540..13 | 2625 | 99.8 | Minus |
3L | 28110227 | 3L | 9400583..9400713 | 300..170 | 190 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:17:56 has no hits.
BS13879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:57 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:46:59 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 102..638 | 1..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:24:23 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 115..634 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:21 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 115..634 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:13 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-6-RA | 115..634 | 17..536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:13 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29026482..29027001 | 17..536 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:24:23 Download gff for
BS13879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24852204..24852723 | 17..536 | 100 | | Minus |
BS13879.pep Sequence
Translation from 16 to 537
> BS13879.pep
MENLRQTKESSEFKMGTSLDNNKLASLGATNKHRLQNTWTLWGVKYDPEI
SWEDMLKEIDSFNTVEDFWNLYFRIDTPSKLNRGCDYMLFKKGIRPMWED
PPNKGGGRWTYKVDKRSTAELDKTWLDVLLCMIGEACDHCDQICGAFVRI
RKNINKISVWTKADAGDECNEQC*
BS13879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-6-PC | 173 | CG1442-PC | 1..173 | 1..173 | 964 | 100 | Plus |
eIF4E-6-PB | 173 | CG1442-PB | 1..173 | 1..173 | 964 | 100 | Plus |
eIF4E-6-PA | 173 | CG1442-PA | 1..173 | 1..173 | 964 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..204 | 32..168 | 448 | 60.6 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..215 | 32..168 | 448 | 60.6 | Plus |