Clone BS13881 Report

Search the DGRC for BS13881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptGapdh2-RA
Protein status:BS13881.pep: full length peptide match
Sequenced Size:1031

Clone Sequence Records

BS13881.3prime Sequence

478 bp (452 high quality bases) assembled on 2006-10-13

> BS13881.3prime
ATGGTCTAGAAAGCTTTTAATCCTTGCTCTGCATGTACTTGATCAGGTCG
ATGACGCGGTTGGAGTAGCCAAACTCGTTGTCGTACCAAGAGATCAGCTT
CACGAACTTGTCGTTTAGCGAAATGCCAGCCTTGGCATCGAACACCGACG
AGTGGGTGTCGCTGAGGAAATCGGTAGAAACGACCTCCTCATCGGTGTAT
CCCAGGATACCCTTCAGGGGTCCGTTGGCGGCCTCCTGAACCTTGGCCTT
AATTTCATCATAGGACGCACCCTTGCCCAAGCGCACGGTCAAATCGACCA
CGGAAACGTTGGGAGTGGGCACACGGAATGCCATTCCGGTGAGCTTACCG
TTGAGGGCGGGGATAACCTTGCCCACGGCCTTGGCAGCTCCAGTGGAAGC
TGGAATGATGTTCTGGGCAGCGCCACGTCCATCACGCCACAACTTGCCGG
AAGGTCCATCGACGGTCTTCTGGGTAGC

BS13881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8893-PA 999 Gapdh2-RA 538..999 478..17 2310 100 Minus
CG8893-PB 999 Gapdh2-RB 538..999 478..17 2310 100 Minus
CG12055-PA 999 Gapdh1-RA 727..995 289..21 620 89.2 Minus
CG12055-PB 999 Gapdh1-RB 727..995 289..21 620 89.2 Minus
CG12055-PA 999 Gapdh1-RA 575..611 441..405 135 94.5 Minus
CG12055-PB 999 Gapdh1-RB 575..611 441..405 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-RC 1377 CG8893-RC 589..1051 478..16 2315 100 Minus
Gapdh2-RA 1443 CG8893-RA 655..1117 478..16 2315 100 Minus
Gapdh1-RB 1330 CG12055-RB 651..1110 475..16 1415 87.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15868873..15869335 478..16 2315 100 Minus
2R 25286936 2R 7792121..7792580 16..475 1415 87.2 Plus
Blast to na_te.dros performed on 2015-02-10 15:09:35 has no hits.

BS13881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:16 Download gff for BS13881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8893-PB 538..999 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:36:16 Download gff for BS13881.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 655..1117 16..478 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:13 Download gff for BS13881.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 655..1117 16..478 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:13 Download gff for BS13881.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15868873..15869335 16..478 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:36:16 Download gff for BS13881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15762906..15763368 16..478 100   Minus

BS13881.5prime Sequence

532 bp (476 high quality bases) assembled on 2006-10-13

> BS13881.5prime
GAAGTTATCAGTCGACATGTCGAAGATTGGTATCAATGGATTTGGTCGCA
TCGGCCGCTTGGTTCTCCGCGCCGCCATTGATAAGGGCGCCAACGTTGTG
GCCGTCAACGATCCCTTCATCGATGTGAACTACATGGTCTACCTGTTCAA
GTTCGATTCGACCCACGGACGTTTTAAGGGCACCGTTGCCGCCGAGGGCG
GTTTCCTGGTGGTCAACGGCCAGAAGATCACCGTCTTCAGCGAACGCGAC
CCGGCCAACATCAACTGGGCCAGCGCTGGTGCCGAATACATCGTGGAGTC
CACTGGCGTGTTCACCACCATCGACAAGGCATCCACTCACTTGAAGGGCG
GTGCCAAGAAGGTTATCATCTCGGCCCCATCCGCCGATGCTCCCATGTTC
GTTTGCGGCGTCAACTTGGATGCCTACAAGCCCGACATGAAGGTGGTCTC
CAACGCATCGTGCACCACCAACTGCTTGGCTCCTCTGGGCAAGGTGATCA
ACGACAACTTCGAAATCGTCGAGGGTCTGATG

BS13881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 22:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8893-PA 999 Gapdh2-RA 1..516 17..532 2530 99.6 Plus
CG8893-PB 999 Gapdh2-RB 1..516 17..532 2530 99.6 Plus
CG12055-PA 999 Gapdh1-RA 1..269 17..285 695 90.3 Plus
CG12055-PB 999 Gapdh1-RB 1..269 17..285 695 90.3 Plus
CG12055-PA 999 Gapdh1-RA 277..516 293..532 675 91.2 Plus
CG12055-PB 999 Gapdh1-RB 277..516 293..532 675 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-RC 1377 CG8893-RC 51..567 16..532 2555 99.6 Plus
Gapdh2-RA 1443 CG8893-RA 117..633 16..532 2555 99.6 Plus
Gapdh1-RB 1330 CG12055-RB 110..626 16..532 1820 90.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15868335..15868851 16..532 2555 99.6 Plus
2R 25286936 2R 7792605..7793121 532..16 1820 90.1 Minus
Blast to na_te.dros performed on 2015-02-11 22:11:56 has no hits.

BS13881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:16 Download gff for BS13881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8893-PB 1..516 17..532 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:37:52 Download gff for BS13881.5prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 110..633 10..532 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:44 Download gff for BS13881.5prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 110..633 10..532 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:44 Download gff for BS13881.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15868328..15868851 10..532 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:37:52 Download gff for BS13881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15762361..15762884 10..532 99   Plus

BS13881.complete Sequence

1031 bp assembled on 2008-08-14

GenBank Submission: KX803750

> BS13881.complete
GAAGTTATCAGTCGACATGTCGAAGATTGGTATCAATGGATTTGGTCGCA
TCGGCCGCTTGGTTCTCCGCGCCGCCATTGATAAGGGCGCCAACGTTGTG
GCCGTCAACGATCCCTTCATCGATGTGAACTACATGGTCTACCTGTTCAA
GTTCGATTCGACCCACGGACGTTTTAAGGGCACCGTTGCCGCCGAGGGCG
GTTTCCTGGTGGTCAACGGCCAGAAGATCACCGTCTTCAGCGAACGCGAC
CCGGCCAACATCAACTGGGCCAGCGCTGGTGCCGAATACATCGTGGAGTC
CACTGGCGTGTTCACCACCATCGACAAGGCATCCACTCACTTGAAGGGCG
GTGCCAAGAAGGTTATCATCTCGGCCCCATCCGCCGATGCTCCCATGTTC
GTTTGCGGCGTCAACTTGGATGCCTACAAGCCCGACATGAAGGTGGTCTC
CAACGCATCGTGCACCACCAACTGCTTGGCTCCTCTGGCCAAGGTGATCA
ACGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTTCATGCCACC
ACCGCTACCCAGAAGACCGTCGATGGACCTTCCGGCAAGTTGTGGCGTGA
TGGACGTGGCGCTGCCCAGAACATCATTCCAGCTTCCACTGGAGCTGCCA
AGGCCGTGGGCAAGGTTATCCCCGCCCTCAACGGTAAGCTCACCGGAATG
GCATTCCGTGTGCCCACTCCCAACGTTTCCGTGGTCGATTTGACCGTGCG
CTTGGGCAAGGGTGCGTCCTATGATGAAATTAAGGCCAAGGTTCAGGAGG
CCGCCAACGGACCCCTGAAGGGTATCCTGGGATACACCGATGAGGAGGTC
GTTTCTACCGATTTCCTCAGCGACACCCACTCGTCGGTGTTCGATGCCAA
GGCTGGCATTTCGCTAAACGACAAGTTCGTGAAGCTGATCTCTTGGTACG
ACAACGAGTTTGGCTACTCCAACCGCGTCATCGACCTGATCAAGTACATG
CAGAGCAAGGATTAAAAGCTTTCTAGACCAT

BS13881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-RC 999 CG8893-PC 1..999 17..1015 4995 100 Plus
Gapdh2-RA 999 CG8893-PA 1..999 17..1015 4995 100 Plus
Gapdh1-RB 999 CG12055-PB 1..999 17..1015 3315 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-RC 1377 CG8893-RC 51..1051 16..1016 5005 100 Plus
Gapdh2-RA 1443 CG8893-RA 117..1117 16..1016 5005 100 Plus
Gapdh1-RB 1330 CG12055-RB 110..1110 16..1016 3325 88.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15868335..15869335 16..1016 5005 100 Plus
2R 25286936 2R 7792121..7793121 1016..16 3325 88.8 Minus
2R 25286936 2R 16959374..16959772 735..337 420 73.7 Minus
Blast to na_te.dros performed on 2014-11-26 15:43:58 has no hits.

BS13881.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:28 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RB 26..1033 10..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:09 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 118..1114 17..1013 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:42 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RB 34..1030 17..1013 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:27 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh2-RA 118..1114 17..1013 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:27 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
X 15868336..15869332 17..1013 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:09 Download gff for BS13881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15762369..15763365 17..1013 100   Plus

BS13881.pep Sequence

Translation from 16 to 1014

> BS13881.pep
MSKIGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
SYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKD*

BS13881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh2-PC 332 CG8893-PC 1..332 1..332 1698 100 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..332 1698 100 Plus
Gapdh1-PB 332 CG12055-PB 1..332 1..332 1665 97.3 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..332 1665 97.3 Plus
CG9010-PA 343 CG9010-PA 1..333 1..332 1114 64.9 Plus