Clone Sequence Records
BS13882.5prime Sequence
608 bp (604 high quality bases) assembled on 2006-10-13
> BS13882.5prime
GAAGTTATCAGTCGACATGCGGACGCCGTACGAAGAAAGCGCTGCTGCCG
CCGACCACAAATATCAATACCAATACACCGCGGCCAATAATAACAATAAT
TACTATAAAAACTATAATGTGAATGGCAATGGGCAGGCGAATGGAAATGG
GAATCTAAGTGGAATTGGTAATGGAAATGGAATTGGAAACGGCAATGGAT
ATGGAATACCTTATCACGCGCGCGAGAACTCGCTGCCATTTAGCTATGGC
ATAGCCAAAACTTCGACACCGTTGCGAAAAACTCCGACACCGACGCGAGT
GGATAGTTTTCTAGACTTTGATTTCGGGCCAACGAATACGAATGTGAATT
CGAATAGTTCTAGCAATAATGGCGGTACTGGCGATATGATAAAGCCACCA
ACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAACGCTGGGCAATGCCGT
TAGTCCCACCAGTTCGACCAATACCAACACCATAGCCAATACATACCACT
ACACGTCGAGCAGCGCAACGCCGACGCCGGTGAGAGATAATTTCGAGCAG
CTGCTGCGGGAGCGACGCGAAAAGGTCTACATTGAATATAGGAATCTGGA
TAGGGAGT
BS13882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9379-PA | 2163 | by-RA | 1..592 | 17..608 | 2935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| by-RC | 4774 | CG9379-RC | 28..619 | 17..608 | 2945 | 99.8 | Plus |
| by-RD | 4378 | CG9379-RD | 28..619 | 17..608 | 2945 | 99.8 | Plus |
| by-RA | 2993 | CG9379-RA | 28..619 | 17..608 | 2945 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9532393..9532984 | 608..17 | 2945 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-13 07:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 9..60 | 67..118 | 107 | 67.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7047..7098 | 67..118 | 107 | 67.3 | Plus |
BS13882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:17 Download gff for
BS13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9379-PA | 1..592 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:43:03 Download gff for
BS13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 28..619 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:18 Download gff for
BS13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 28..619 | 17..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:18 Download gff for
BS13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9532393..9532984 | 17..608 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:43:03 Download gff for
BS13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5358115..5358706 | 17..608 | 99 | | Minus |
BS13882.complete Sequence
2195 bp assembled on 2009-12-07
GenBank Submission: KX803222
> BS13882.complete
GAAGTTATCAGTCGACATGCGGACGCCGTACGAAGAAAGCGCTGCTGCCG
CCGACCACAAATATCAATACCAATACACCGCGGCCAATAATAACAATAAT
TACTATAAAAACTATAATGTGAATGGCAATGGGCAGGCGAATGGAAATGG
GAATCTAAGTGGAATTGGTAATGGAAATGGAATTGGAAACGGCAATGGAT
ATGGAATACCTTATCACGCGCGCGAGAACTCGCTGCCATTTAGCTATGGC
ATAGCCAAAACTTCGACACCGTTGCGAAAAACTCCGACACCGACGCGAGT
GGATAGTTTTCTAGACTTTGATTTCGGGCCAACGAATACGAATGTGAATT
CGAATAGTTCTAGCAATAATGGCGGTACTGGCGATATGATAAAGCCACCA
ACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAACGCTGGGCAATGCCGT
TAGTCCCACCAGTTCGACCAATACCAACACCATAGCCAATACATACCACT
ACACGTCGAGCAGCGCAACGCCGACGCCGGTGAGAGATAATTTCGAGCAG
CTGCTGCGGGAGCGACGCGAAAAGGTCTACAATGAATATAGGAATCTGGA
TAGGGAGTCGTCCGGGGAGCGGGCCAGAGTGGCACCCGCTCCGCCGCAGA
GGCAATACTACCCGAGCGATGGCTATGGAATTGGGCTGAAGAACGATAGC
AATGGAACCCTATACCGCAAGAGCCCCTCGTCTAATGGGAAATCAACGAA
ATACAACTACGATTTTGAGTTCAATCTGAATCTGGATGATGTTAGGCCCG
AACCTACACCGTATACCACGAGGAATATTCACTTCGAGGATCTGCGGCTG
GATCAGGATGTGCCAGATGGCGTGGTCAATCGGCGGACCATGGAACGCAA
TTATCACACAATTAACAGCTTGGAAACGACCCACAAACGCCAGCAGTTGG
AGCCGTTGGAGCAACTGGGCGCCGTTTATGGCCAGAACCACATGGAGGAG
ACACTCACGCGCACTCGTCGCGATCTCTCCGCATCCACATCGACATCCAA
GTCCACCTCGCCATTGCCGGCAATAGGAGTACCAGCTATAGCACCAGCTT
CGCCCATTTATGCCACCAGTACGAAGAGAGTGAGCAACCCAAATACCAAT
GGCCAACAGCAGATGACGCCTAGTCCCACCAGTAGGCCAGAAACGCCCGC
CTTTCCGGTCACGCCGCGCACGCCTTTTGGGGCATCATCATCATCATCTG
CGTCTCTGGCGCCGACGACCCAGTTGCCCCCAGAGTCGATCTACCAAACA
GGGCCACGTCGTGGCGTACCGCCTGCACTGCAGCCACTCGAGGTGTCCGC
CGATTCCGTACAATTTGCCCGTAGTTCGTCCCAGTTCTGGTACAAACCAA
ATCTCACTCGCGAAGATGCCATCGCTCTGCTGGCCTCTGCCCAGCCGGGC
ACGTTCCTGGTCAGGGACTCCACCACGTACAAGGATTCCTATGGCCTGGT
GGTGCGGGTGTCCCAACCGCCTCCCGGTTCACAGGAGCTGGTGCGTCACT
TCCTCATCGAGCCCACGAAGGGGGGAGTGCATCTGAAGGGCTGCGATGAC
GAGCCGGTGTTCACTTCACTGTCCGCCCTCGTCTTCGAGCATTCCATAAG
CCAGCTGGCGTTGCCATGTCTCCTCCGTCTGCCCGATCGGGATATAGTAC
CACCGGTGCGGGCCACAACCCCTGCCCAGCAGCATCTATTGGCCCACGGA
GCAGCCACCAATGTGCTGTGGCTCTACTCCTGCGACACGGAATCGCTGAC
AGGAAACGAGGCCATCCGCAAGGCCATCCGCCAGATGTACGGTCAGCAAC
CCTTGCCGCAGCCCACGGAGGTGCACTTCAAGGTCTCCTCGCAGGGCATC
ACGCTCACGGACAATACGCGCAAGAAGTTCTTCCGGAAGCACTACAAGGC
GGATGTTATCTCGCACTGTGCCATCGATCCGGAGAACAGGATGTGGACCA
GTGAGGGCGAGTCTGACAAGAAGACCATCTTCGCCTTCGTGGCCAGGAGG
TCGCACAGCTCCACGGACAACCAGTGCCATGTGTTCTGCGACCTGTCCGT
CAGCCAGCCGGCGGCGGCGATTGTCTCGTTCGCCAATCGGACACTGCCCA
CCGAAAAGCTGCGCAACTACGTCCTGTAGAAGCTTTCTAGACCAT
BS13882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| by-RC | 2163 | CG9379-PC | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| by-RD | 2163 | CG9379-PD | 1..2163 | 17..2179 | 10815 | 100 | Plus |
| by-RA | 2163 | CG9379-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| by-RC | 4774 | CG9379-RC | 28..2190 | 17..2179 | 10815 | 100 | Plus |
| by-RD | 4378 | CG9379-RD | 28..2190 | 17..2179 | 10815 | 100 | Plus |
| by-RA | 2993 | CG9379-RA | 28..2190 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9530822..9532984 | 2179..17 | 10815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:29:47 has no hits.
BS13882.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:45 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 29..2191 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:32 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 28..2190 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:42 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 29..2191 | 17..2179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:39 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| by-RA | 28..2190 | 17..2179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:39 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9530822..9532984 | 17..2179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:32 Download gff for
BS13882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5356544..5358706 | 17..2179 | 100 | | Minus |
BS13882.pep Sequence
Translation from 16 to 2178
> BS13882.pep
MRTPYEESAAAADHKYQYQYTAANNNNNYYKNYNVNGNGQANGNGNLSGI
GNGNGIGNGNGYGIPYHARENSLPFSYGIAKTSTPLRKTPTPTRVDSFLD
FDFGPTNTNVNSNSSSNNGGTGDMIKPPTRLTSPLLVRKTLGNAVSPTSS
TNTNTIANTYHYTSSSATPTPVRDNFEQLLRERREKVYNEYRNLDRESSG
ERARVAPAPPQRQYYPSDGYGIGLKNDSNGTLYRKSPSSNGKSTKYNYDF
EFNLNLDDVRPEPTPYTTRNIHFEDLRLDQDVPDGVVNRRTMERNYHTIN
SLETTHKRQQLEPLEQLGAVYGQNHMEETLTRTRRDLSASTSTSKSTSPL
PAIGVPAIAPASPIYATSTKRVSNPNTNGQQQMTPSPTSRPETPAFPVTP
RTPFGASSSSSASLAPTTQLPPESIYQTGPRRGVPPALQPLEVSADSVQF
ARSSSQFWYKPNLTREDAIALLASAQPGTFLVRDSTTYKDSYGLVVRVSQ
PPPGSQELVRHFLIEPTKGGVHLKGCDDEPVFTSLSALVFEHSISQLALP
CLLRLPDRDIVPPVRATTPAQQHLLAHGAATNVLWLYSCDTESLTGNEAI
RKAIRQMYGQQPLPQPTEVHFKVSSQGITLTDNTRKKFFRKHYKADVISH
CAIDPENRMWTSEGESDKKTIFAFVARRSHSSTDNQCHVFCDLSVSQPAA
AIVSFANRTLPTEKLRNYVL*
BS13882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| by-PC | 720 | CG9379-PC | 1..720 | 1..720 | 3792 | 100 | Plus |
| by-PD | 720 | CG9379-PD | 1..720 | 1..720 | 3792 | 100 | Plus |
| by-PA | 720 | CG9379-PA | 1..720 | 1..720 | 3792 | 100 | Plus |
| CG33993-PB | 258 | CG33993-PB | 123..215 | 458..556 | 153 | 39.4 | Plus |
