Clone Sequence Records
BS13883.3prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13883.3prime
ATGGTCTAGAAAGCTTTTACCATCCATGAGCGAGTCCATAGGCAGGAGCA
GCAAGAGCTGTCTTGTAGCCCAGTCCCAGAGGAGCACCCAGAGTAGGATA
TGCCGACTTGTAGCCCAATCCCAAGGGAGCGGCCAGAGGGGCGTGAGCTA
GTCCCAAAGGACCATGAGCCAGGCCAATGGGACCGGGACCATATCCCAAT
CCGTAGGCGGAAAGGGCCGGAGCAGCCAGAGGAGCGTGCGCCAAGGCCGG
GGCGGCATAGCTAAGCCTGGGGGCCAGCCCGTAAGAGGCAATCGAGGGAG
CAGCCAAGGCGTGTCCATAGGAGATGGCCGGAGCAGCTGCAGTCAGCGGC
AAGGCCGGAGCAGCTAATCCGCCCAAATAGCCAGGAGCAGCAGCAGCGCT
GGCCAGGCAGAAAACGGCGAAAACGAAGTATTTGAACATGTCGACTGATA
ACT
BS13883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-PA | 423 | CG13065-RA | 1..423 | 439..17 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-RA | 677 | CG13065-RA | 53..476 | 439..16 | 2120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16277560..16277979 | 435..16 | 2070 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:13:21 has no hits.
BS13883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:17 Download gff for
BS13883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-PA | 1..423 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:13 Download gff for
BS13883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 53..483 | 9..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:31 Download gff for
BS13883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 53..483 | 9..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:31 Download gff for
BS13883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16277568..16277986 | 9..427 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:13 Download gff for
BS13883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16270668..16271086 | 9..427 | 99 | | Minus |
BS13883.5prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13883.5prime
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGTAAAAGCTTTCTAG
ACC
BS13883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-PA | 423 | CG13065-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-RA | 677 | CG13065-RA | 53..476 | 17..440 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16277560..16277979 | 21..440 | 2070 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:43 has no hits.
BS13883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:18 Download gff for
BS13883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:53 Download gff for
BS13883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 53..483 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:40 Download gff for
BS13883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 53..483 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:40 Download gff for
BS13883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16277568..16277986 | 29..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:53 Download gff for
BS13883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16270668..16271086 | 29..447 | 99 | | Plus |
BS13883.complete Sequence
455 bp assembled on 2006-11-01
GenBank Submission: FJ637545
> BS13883.complete
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGTAAAAGCTTTCTAG
ACCAT
BS13883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-RA | 423 | CG13065-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-RA | 677 | CG13065-RA | 53..476 | 17..440 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16277560..16277979 | 21..440 | 2070 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:30:59 has no hits.
BS13883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:53 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:15 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 55..485 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:45 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 58..473 | 22..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:53 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 55..485 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:14 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13065-RA | 58..473 | 22..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:14 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16277561..16277976 | 22..437 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:45 Download gff for
BS13883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16270661..16271076 | 22..437 | 99 | | Plus |
BS13883.pep Sequence
Translation from 16 to 438
> BS13883.pep
MFKYFVFAVFCLASAAAAPGYLGGLAAPALPLTAAAPAISYGHALAAPSI
ASYGLAPRLSYAAPALAHAPLAAPALSAYGLGYGPGPIGLAHGPLGLAHA
PLAAPLGLGYKSAYPTLGAPLGLGYKTALAAPAYGLAHGW*
BS13883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13065-PA | 140 | CG13065-PA | 1..140 | 1..140 | 730 | 100 | Plus |