Clone BS13883 Report

Search the DGRC for BS13883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG13065-RA
Protein status:BS13883.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13883.3prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13883.3prime
ATGGTCTAGAAAGCTTTTACCATCCATGAGCGAGTCCATAGGCAGGAGCA
GCAAGAGCTGTCTTGTAGCCCAGTCCCAGAGGAGCACCCAGAGTAGGATA
TGCCGACTTGTAGCCCAATCCCAAGGGAGCGGCCAGAGGGGCGTGAGCTA
GTCCCAAAGGACCATGAGCCAGGCCAATGGGACCGGGACCATATCCCAAT
CCGTAGGCGGAAAGGGCCGGAGCAGCCAGAGGAGCGTGCGCCAAGGCCGG
GGCGGCATAGCTAAGCCTGGGGGCCAGCCCGTAAGAGGCAATCGAGGGAG
CAGCCAAGGCGTGTCCATAGGAGATGGCCGGAGCAGCTGCAGTCAGCGGC
AAGGCCGGAGCAGCTAATCCGCCCAAATAGCCAGGAGCAGCAGCAGCGCT
GGCCAGGCAGAAAACGGCGAAAACGAAGTATTTGAACATGTCGACTGATA
ACT

BS13883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-PA 423 CG13065-RA 1..423 439..17 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-RA 677 CG13065-RA 53..476 439..16 2120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16277560..16277979 435..16 2070 99.5 Minus
Blast to na_te.dros performed on 2015-01-31 10:13:21 has no hits.

BS13883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:17 Download gff for BS13883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:13 Download gff for BS13883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 53..483 9..439 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:31 Download gff for BS13883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 53..483 9..439 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:31 Download gff for BS13883.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16277568..16277986 9..427 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:13 Download gff for BS13883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16270668..16271086 9..427 99   Minus

BS13883.5prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13883.5prime
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGTAAAAGCTTTCTAG
ACC

BS13883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-PA 423 CG13065-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-RA 677 CG13065-RA 53..476 17..440 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16277560..16277979 21..440 2070 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:43 has no hits.

BS13883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:18 Download gff for BS13883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:53 Download gff for BS13883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 53..483 17..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:40 Download gff for BS13883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 53..483 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:40 Download gff for BS13883.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16277568..16277986 29..447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:53 Download gff for BS13883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16270668..16271086 29..447 99   Plus

BS13883.complete Sequence

455 bp assembled on 2006-11-01

GenBank Submission: FJ637545

> BS13883.complete
GAAGTTATCAGTCGACATGTTCAAATACTTCGTTTTCGCCGTTTTCTGCC
TGGCCAGCGCTGCTGCTGCTCCTGGCTATTTGGGCGGATTAGCTGCTCCG
GCCTTGCCGCTGACTGCAGCTGCTCCGGCCATCTCCTATGGACACGCCTT
GGCTGCTCCCTCGATTGCCTCTTACGGGCTGGCCCCCAGGCTTAGCTATG
CCGCCCCGGCCTTGGCGCACGCTCCTCTGGCTGCTCCGGCCCTTTCCGCC
TACGGATTGGGATATGGTCCCGGTCCCATTGGCCTGGCTCATGGTCCTTT
GGGACTAGCTCACGCCCCTCTGGCCGCTCCCTTGGGATTGGGCTACAAGT
CGGCATATCCTACTCTGGGTGCTCCTCTGGGACTGGGCTACAAGACAGCT
CTTGCTGCTCCTGCCTATGGACTCGCTCATGGATGGTAAAAGCTTTCTAG
ACCAT

BS13883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-RA 423 CG13065-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-RA 677 CG13065-RA 53..476 17..440 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16277560..16277979 21..440 2070 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 16:30:59 has no hits.

BS13883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:53 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:15 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 55..485 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:45 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 58..473 22..437 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:53 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 55..485 17..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:14 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
CG13065-RA 58..473 22..437 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:14 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16277561..16277976 22..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:45 Download gff for BS13883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16270661..16271076 22..437 99   Plus

BS13883.pep Sequence

Translation from 16 to 438

> BS13883.pep
MFKYFVFAVFCLASAAAAPGYLGGLAAPALPLTAAAPAISYGHALAAPSI
ASYGLAPRLSYAAPALAHAPLAAPALSAYGLGYGPGPIGLAHGPLGLAHA
PLAAPLGLGYKSAYPTLGAPLGLGYKTALAAPAYGLAHGW*

BS13883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13065-PA 140 CG13065-PA 1..140 1..140 730 100 Plus