Clone BS13886 Report

Search the DGRC for BS13886

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptPepck-RA
Protein status:BS13886.pep: full length peptide match
Sequenced Size:1976

Clone Sequence Records

BS13886.3prime Sequence

555 bp (518 high quality bases) assembled on 2006-10-13

> BS13886.3prime
ATGGTCTAGAAAGCTTTTACAGGTTGTCTACGCGGGAAGATAGCTCGTCC
AGCTGCTGGTAAATGCTGGCCGGAAGATCGGCGCCCACCTGTGACTCGAA
GTAGGTGCGAATATCCTTGACCTCCTGCGACCAGAACTCCTTGGGCAGCG
AGAAGATCTCCTTCACGTCCACCTTATCCTTCATGCCATCGAGGTTTAGG
GCACCCTCGGCGGGAATGTGTCCAATGGCCGAGTCCACGTAGCAGGATTC
GCCATTGACCCTGCGCAGGATCCATTCCAGCACACGGGAGTTCTCTCCGT
ATCCGGGCCACATGAACTTGCCCTCGGCACTCTTGCGGAACCAGTTGACG
TGGAAGATCTTTGGCACCTGACCACGCTTCTCCATGCTCAGCCAGTGGGC
CACGTAGTCGCCAAAGTTGTAGCCAAAGAAGGGCCTCATGGCGAACGGAT
CGTGCATGATCACCTTGCCCTTGTGCTCGGCCGCAGCAGTGGCCTCACTC
CTCATGGCTGCTCCAATGAAGACTCCGTGGGTCCAGTCCCGAGCCCTCAT
AAATT

BS13886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17725-PB 1503 Pepck-RB 975..1503 545..17 2645 100 Minus
CG17725-PA 1944 Pepck-RA 1416..1944 545..17 2645 100 Minus
CG10924-PA 1917 CG10924-RA 1464..1532 473..405 195 91.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG45087-RA 2486 CG45087-RA 1678..2215 555..17 2655 99.6 Minus
Pepck-RA 2486 CG17725-RA 1678..2215 555..17 2655 99.6 Minus
CG10924-RB 2019 CG10924-RB 1424..1747 545..222 720 81.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18538617..18539145 545..17 2645 100 Minus
2R 25286936 2R 18534028..18534351 545..222 720 81.5 Minus
Blast to na_te.dros performed on 2015-02-11 15:39:23 has no hits.

BS13886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:19 Download gff for BS13886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17725-PA 1407..1944 17..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:37 Download gff for BS13886.3prime
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1678..2219 14..555 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:45 Download gff for BS13886.3prime
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 1678..2219 14..555 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:45 Download gff for BS13886.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18538608..18539149 14..555 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:37 Download gff for BS13886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14426113..14426654 14..555 99   Minus

BS13886.5prime Sequence

608 bp (556 high quality bases) assembled on 2006-10-13

> BS13886.5prime
GAAGTTATCAGTCGACATGCCTGAGCTCATTGAACAAAGCAAAATTATCT
CCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGACAAT
TGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAAATGT
GGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATCGCCC
TCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGAGAAC
AAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGCTGCC
CAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTGGCCC
GCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGACGATT
CCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCTCGCC
CAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATGAAGG
GTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGGCTCCCC
CGCTCTCTAAGATCGGAATCGAACTGACGGACTTCTGCTTACGTGGTGGC
CTCCATGA

BS13886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17725-PA 1944 Pepck-RA 1..589 17..608 2840 99.4 Plus
CG17725-PB 1503 Pepck-RB 1..148 458..608 635 98 Plus
CG10924-PA 1917 CG10924-RA 437..470 480..513 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG45087-RA 2486 CG45087-RA 272..860 17..608 2885 99.5 Plus
Pepck-RA 2486 CG17725-RA 272..860 17..608 2885 99.5 Plus
CG10924-RB 2019 CG10924-RB 469..559 480..572 235 84.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18537230..18537790 45..608 2660 98.9 Plus
2R 25286936 2R 18533073..18533136 480..543 200 87.5 Plus
2R 25286936 2R 18532889..18532941 296..348 190 90.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:46:01 has no hits.

BS13886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for BS13886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17725-PA 1..588 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:26 Download gff for BS13886.5prime
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 264..859 9..607 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:55 Download gff for BS13886.5prime
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 264..859 9..607 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:55 Download gff for BS13886.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18537234..18537789 49..607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:26 Download gff for BS13886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14424739..14425294 49..607 99   Plus

BS13886.complete Sequence

1976 bp assembled on 2010-05-13

GenBank Submission: KX806166

> BS13886.complete
GAAGTTATCAGTCGACATGCCTGAGCTCATTGAACAAAGCAAAATTATCT
CCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGACAAT
TGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAAATGT
GGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATCGCCC
TCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGAGAAC
AAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGCTGCC
CAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTGGCCC
GCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGACGATT
CCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCTCGCC
CAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATGAAGG
GTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGCTCCCCG
CTCTCTAAGATCGGAATCGAACTGACGGACTCTGCTTACGTGGTGGCCTC
CATGAGGATCATGACACGCATGGGAGCCGCTGTCTTGCGCCAGCTGGCCA
AGAAGGAGGAATTCGTCCGCGCCCTACACTCTGTGGGCGCCCCTGCCAAC
GGACAGGTGGAGCAGCCATCCTGGCCTTGTGATCCCGAACGCACCATCAT
CCTGCACAAGCCCGCCGAGAACCTTATTGTGTCTTACGGATCGGGCTACG
GCGGCAACTCGCTGCTGGGCAAGAAGTGCTTCGCCCTGAGGATTGGCAGC
ACCATTGCCAAGCAGGAGGGCTGGCTGGCCGAGCACATGTTGATTCTGGG
CATCACCGATCCCAAGGGCGAGAAGAAGTACATCACTGCCGCCTTTCCCT
CGGCCTGTGGCAAGACCAATCTGGCCATGCTGAATCCCTCGTTGGCCAAC
TACAAGGTGGAATGCGTGGGCGACGACATTGCGTGGATGAAGTTTGACTC
GCAGGGAGTGCTGCGTGCCATCAACCCAGAGAATGGATTCTTTGGTGTGG
CTCCAGGAACCTCAATGGAGACCAATCCCATTGCCATGAACACTGTTTTC
AAGAACACCATCTTCACGAACGTGGCCTCCACCTCTGATGGCGGTGTGTT
CTGGGAGGGCATGGAAAGCAGTCTGGCTCCCAATGTCCAAATCACTGACT
GGTTGGGCAAACCCTGGACCAAGGATTCCGGCAAGCCCGCTGCGCATCCC
AACTCCCGCTTCTGCACTCCAGCCGCCCAGTGCCCGATTATCGATGAAGC
CTGGGAAGATCCGGCGGGAGTGCCCATCTCCGCCATGCTCTTCGGAGGAC
GTCGTCCCGCCGGAGTGCCCCTAATCTATGAGGCTCGGGACTGGACCCAC
GGAGTCTTCATTGGAGCAGCCATGAGGAGTGAGGCCACTGCTGCGGCCGA
GCACAAGGGCAAGGTGATCATGCACGATCCGTTCGCCATGAGGCCCTTCT
TTGGCTACAACTTTGGCGACTACGTGGCCCACTGGCTGAGCATGGAGAAG
CGTGGTCAGGTGCCAAAGATCTTCCACGTCAACTGGTTCCGCAAGAGTGC
CGAGGGCAAGTTCATGTGGCCCGGATACGGAGAGAACTCCCGTGTGCTGG
AATGGATCCTGCGCAGGGTCAATGGCGAATCCTGCTACGTGGACTCGGCC
ATTGGACACATTCCCGCCGAGGGTGCCCTAAACCTCGATGGCATGAAGGA
TAAGGTGGACGTGAAGGAGATCTTCTCGCTGCCCAAGGAGTTCTGGTCGC
AGGAGGTCAAGGATATTCGCACCTACTTCGAGTCACAGGTGGGCGCCGAT
CTTCCGGCCAGCATTTACCAGCAGCTGGACGAGCTATCTTCCCGCGTAGA
CAACCTGTAAAAGCTTTCTAGACCAT

BS13886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck-RA 1944 CG17725-PA 1..1944 17..1960 9720 100 Plus
CG10924-RB 1692 CG10924-PB 450..1490 715..1755 1920 79 Plus
CG10924-RA 1917 CG10924-PA 675..1715 715..1755 1920 79 Plus
CG10924-RB 1692 CG10924-PB 212..347 480..615 320 82.4 Plus
CG10924-RB 1692 CG10924-PB 28..80 296..348 190 90.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG45087-RA 2486 CG45087-RA 272..2215 17..1960 9720 100 Plus
Pepck-RA 2486 CG17725-RA 272..2215 17..1960 9720 100 Plus
CG10924-RB 2019 CG10924-RB 707..1747 715..1755 1920 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18537230..18539145 45..1960 9565 99.9 Plus
2R 25286936 2R 18533311..18534351 715..1755 1920 79 Plus
2R 25286936 2R 18533073..18533208 480..615 320 82.4 Plus
2R 25286936 2R 18532889..18532941 296..348 190 90.6 Plus
Blast to na_te.dros performed on 2014-11-28 02:15:00 has no hits.

BS13886.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:42 Download gff for BS13886.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 272..2213 17..1958 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:43 Download gff for BS13886.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 272..2213 17..1958 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:09 Download gff for BS13886.complete
Subject Subject Range Query Range Percent Splice Strand
Pepck-RA 272..2213 17..1958 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:09 Download gff for BS13886.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18537038..18537069 17..48 100 -> Plus
2R 18537234..18539143 49..1958 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:43 Download gff for BS13886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14424543..14424574 17..48 100 -> Plus
arm_2R 14424739..14426648 49..1958 100   Plus

BS13886.pep Sequence

Translation from 16 to 1959

> BS13886.pep
MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT
GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC
WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA
AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT
RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA
ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK
GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR
AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME
SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA
GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV
IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM
WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK
EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*

BS13886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck-PA 647 CG17725-PA 1..647 1..647 3448 100 Plus
CG10924-PA 638 CG10924-PA 11..638 16..647 2447 70 Plus
CG10924-PB 563 CG10924-PB 1..563 85..647 2315 73.6 Plus