Clone Sequence Records
BS13886.3prime Sequence
555 bp (518 high quality bases) assembled on 2006-10-13
> BS13886.3prime
ATGGTCTAGAAAGCTTTTACAGGTTGTCTACGCGGGAAGATAGCTCGTCC
AGCTGCTGGTAAATGCTGGCCGGAAGATCGGCGCCCACCTGTGACTCGAA
GTAGGTGCGAATATCCTTGACCTCCTGCGACCAGAACTCCTTGGGCAGCG
AGAAGATCTCCTTCACGTCCACCTTATCCTTCATGCCATCGAGGTTTAGG
GCACCCTCGGCGGGAATGTGTCCAATGGCCGAGTCCACGTAGCAGGATTC
GCCATTGACCCTGCGCAGGATCCATTCCAGCACACGGGAGTTCTCTCCGT
ATCCGGGCCACATGAACTTGCCCTCGGCACTCTTGCGGAACCAGTTGACG
TGGAAGATCTTTGGCACCTGACCACGCTTCTCCATGCTCAGCCAGTGGGC
CACGTAGTCGCCAAAGTTGTAGCCAAAGAAGGGCCTCATGGCGAACGGAT
CGTGCATGATCACCTTGCCCTTGTGCTCGGCCGCAGCAGTGGCCTCACTC
CTCATGGCTGCTCCAATGAAGACTCCGTGGGTCCAGTCCCGAGCCCTCAT
AAATT
BS13886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17725-PB | 1503 | Pepck-RB | 975..1503 | 545..17 | 2645 | 100 | Minus |
CG17725-PA | 1944 | Pepck-RA | 1416..1944 | 545..17 | 2645 | 100 | Minus |
CG10924-PA | 1917 | CG10924-RA | 1464..1532 | 473..405 | 195 | 91.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45087-RA | 2486 | CG45087-RA | 1678..2215 | 555..17 | 2655 | 99.6 | Minus |
Pepck-RA | 2486 | CG17725-RA | 1678..2215 | 555..17 | 2655 | 99.6 | Minus |
CG10924-RB | 2019 | CG10924-RB | 1424..1747 | 545..222 | 720 | 81.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18538617..18539145 | 545..17 | 2645 | 100 | Minus |
2R | 25286936 | 2R | 18534028..18534351 | 545..222 | 720 | 81.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:23 has no hits.
BS13886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:19 Download gff for
BS13886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17725-PA | 1407..1944 | 17..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:37 Download gff for
BS13886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 1678..2219 | 14..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:45 Download gff for
BS13886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 1678..2219 | 14..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:45 Download gff for
BS13886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18538608..18539149 | 14..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:37 Download gff for
BS13886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14426113..14426654 | 14..555 | 99 | | Minus |
BS13886.5prime Sequence
608 bp (556 high quality bases) assembled on 2006-10-13
> BS13886.5prime
GAAGTTATCAGTCGACATGCCTGAGCTCATTGAACAAAGCAAAATTATCT
CCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGACAAT
TGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAAATGT
GGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATCGCCC
TCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGAGAAC
AAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGCTGCC
CAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTGGCCC
GCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGACGATT
CCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCTCGCC
CAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATGAAGG
GTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGGCTCCCC
CGCTCTCTAAGATCGGAATCGAACTGACGGACTTCTGCTTACGTGGTGGC
CTCCATGA
BS13886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17725-PA | 1944 | Pepck-RA | 1..589 | 17..608 | 2840 | 99.4 | Plus |
CG17725-PB | 1503 | Pepck-RB | 1..148 | 458..608 | 635 | 98 | Plus |
CG10924-PA | 1917 | CG10924-RA | 437..470 | 480..513 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45087-RA | 2486 | CG45087-RA | 272..860 | 17..608 | 2885 | 99.5 | Plus |
Pepck-RA | 2486 | CG17725-RA | 272..860 | 17..608 | 2885 | 99.5 | Plus |
CG10924-RB | 2019 | CG10924-RB | 469..559 | 480..572 | 235 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18537230..18537790 | 45..608 | 2660 | 98.9 | Plus |
2R | 25286936 | 2R | 18533073..18533136 | 480..543 | 200 | 87.5 | Plus |
2R | 25286936 | 2R | 18532889..18532941 | 296..348 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:46:01 has no hits.
BS13886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for
BS13886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17725-PA | 1..588 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:08:26 Download gff for
BS13886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 264..859 | 9..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:55 Download gff for
BS13886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 264..859 | 9..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:55 Download gff for
BS13886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18537234..18537789 | 49..607 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:08:26 Download gff for
BS13886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14424739..14425294 | 49..607 | 99 | | Plus |
BS13886.complete Sequence
1976 bp assembled on 2010-05-13
GenBank Submission: KX806166
> BS13886.complete
GAAGTTATCAGTCGACATGCCTGAGCTCATTGAACAAAGCAAAATTATCT
CCGGCAATGTCTGCGGTCTGCCCCAGTTGCACAAGCTGCGCCAGGACAAT
TGCGGTCTGTACAGCCACATCCGTGGCATTCCCATCTCCTATGGAAATGT
GGATTTGCTGACCACCGGTGTCCGTGCCTTCGTGGAGGAGGGCATCGCCC
TCTGCCAGCCCGACCAGGTGCACATCTGCGATGGCAGCGAGCAGGAGAAC
AAGGTGCTCATCAAGAGCCTCTTGGAGGCTGGCACCATTGTGCCGCTGCC
CAAGTACGACAATTGCTGGCTGGCCCGCACCAATCCGGCGGATGTGGCCC
GCGTCGAGTCGCGCACTTTCATCTGCACCGAGCGGCGGGAGGAGACGATT
CCCACTCCAGTGGAGGGTGTCAAGGGAACCCTGGGCAACTGGATCTCGCC
CAGCGACATGGATGCTGCAGTGCAGCAGCGATTCCCCGGCTGCATGAAGG
GTCGCACCATGTACGTGGTGCCCTTCAGCATGGGTCCTGTGGGCTCCCCG
CTCTCTAAGATCGGAATCGAACTGACGGACTCTGCTTACGTGGTGGCCTC
CATGAGGATCATGACACGCATGGGAGCCGCTGTCTTGCGCCAGCTGGCCA
AGAAGGAGGAATTCGTCCGCGCCCTACACTCTGTGGGCGCCCCTGCCAAC
GGACAGGTGGAGCAGCCATCCTGGCCTTGTGATCCCGAACGCACCATCAT
CCTGCACAAGCCCGCCGAGAACCTTATTGTGTCTTACGGATCGGGCTACG
GCGGCAACTCGCTGCTGGGCAAGAAGTGCTTCGCCCTGAGGATTGGCAGC
ACCATTGCCAAGCAGGAGGGCTGGCTGGCCGAGCACATGTTGATTCTGGG
CATCACCGATCCCAAGGGCGAGAAGAAGTACATCACTGCCGCCTTTCCCT
CGGCCTGTGGCAAGACCAATCTGGCCATGCTGAATCCCTCGTTGGCCAAC
TACAAGGTGGAATGCGTGGGCGACGACATTGCGTGGATGAAGTTTGACTC
GCAGGGAGTGCTGCGTGCCATCAACCCAGAGAATGGATTCTTTGGTGTGG
CTCCAGGAACCTCAATGGAGACCAATCCCATTGCCATGAACACTGTTTTC
AAGAACACCATCTTCACGAACGTGGCCTCCACCTCTGATGGCGGTGTGTT
CTGGGAGGGCATGGAAAGCAGTCTGGCTCCCAATGTCCAAATCACTGACT
GGTTGGGCAAACCCTGGACCAAGGATTCCGGCAAGCCCGCTGCGCATCCC
AACTCCCGCTTCTGCACTCCAGCCGCCCAGTGCCCGATTATCGATGAAGC
CTGGGAAGATCCGGCGGGAGTGCCCATCTCCGCCATGCTCTTCGGAGGAC
GTCGTCCCGCCGGAGTGCCCCTAATCTATGAGGCTCGGGACTGGACCCAC
GGAGTCTTCATTGGAGCAGCCATGAGGAGTGAGGCCACTGCTGCGGCCGA
GCACAAGGGCAAGGTGATCATGCACGATCCGTTCGCCATGAGGCCCTTCT
TTGGCTACAACTTTGGCGACTACGTGGCCCACTGGCTGAGCATGGAGAAG
CGTGGTCAGGTGCCAAAGATCTTCCACGTCAACTGGTTCCGCAAGAGTGC
CGAGGGCAAGTTCATGTGGCCCGGATACGGAGAGAACTCCCGTGTGCTGG
AATGGATCCTGCGCAGGGTCAATGGCGAATCCTGCTACGTGGACTCGGCC
ATTGGACACATTCCCGCCGAGGGTGCCCTAAACCTCGATGGCATGAAGGA
TAAGGTGGACGTGAAGGAGATCTTCTCGCTGCCCAAGGAGTTCTGGTCGC
AGGAGGTCAAGGATATTCGCACCTACTTCGAGTCACAGGTGGGCGCCGAT
CTTCCGGCCAGCATTTACCAGCAGCTGGACGAGCTATCTTCCCGCGTAGA
CAACCTGTAAAAGCTTTCTAGACCAT
BS13886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pepck-RA | 1944 | CG17725-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
CG10924-RB | 1692 | CG10924-PB | 450..1490 | 715..1755 | 1920 | 79 | Plus |
CG10924-RA | 1917 | CG10924-PA | 675..1715 | 715..1755 | 1920 | 79 | Plus |
CG10924-RB | 1692 | CG10924-PB | 212..347 | 480..615 | 320 | 82.4 | Plus |
CG10924-RB | 1692 | CG10924-PB | 28..80 | 296..348 | 190 | 90.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45087-RA | 2486 | CG45087-RA | 272..2215 | 17..1960 | 9720 | 100 | Plus |
Pepck-RA | 2486 | CG17725-RA | 272..2215 | 17..1960 | 9720 | 100 | Plus |
CG10924-RB | 2019 | CG10924-RB | 707..1747 | 715..1755 | 1920 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18537230..18539145 | 45..1960 | 9565 | 99.9 | Plus |
2R | 25286936 | 2R | 18533311..18534351 | 715..1755 | 1920 | 79 | Plus |
2R | 25286936 | 2R | 18533073..18533208 | 480..615 | 320 | 82.4 | Plus |
2R | 25286936 | 2R | 18532889..18532941 | 296..348 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:00 has no hits.
BS13886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:42 Download gff for
BS13886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 272..2213 | 17..1958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:43 Download gff for
BS13886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 272..2213 | 17..1958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:09 Download gff for
BS13886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pepck-RA | 272..2213 | 17..1958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:09 Download gff for
BS13886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18537038..18537069 | 17..48 | 100 | -> | Plus |
2R | 18537234..18539143 | 49..1958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:43 Download gff for
BS13886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14424543..14424574 | 17..48 | 100 | -> | Plus |
arm_2R | 14424739..14426648 | 49..1958 | 100 | | Plus |
BS13886.pep Sequence
Translation from 16 to 1959
> BS13886.pep
MPELIEQSKIISGNVCGLPQLHKLRQDNCGLYSHIRGIPISYGNVDLLTT
GVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPLPKYDNC
WLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDA
AVQQRFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMT
RMGAAVLRQLAKKEEFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPA
ENLIVSYGSGYGGNSLLGKKCFALRIGSTIAKQEGWLAEHMLILGITDPK
GEKKYITAAFPSACGKTNLAMLNPSLANYKVECVGDDIAWMKFDSQGVLR
AINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGME
SSLAPNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPA
GVPISAMLFGGRRPAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKV
IMHDPFAMRPFFGYNFGDYVAHWLSMEKRGQVPKIFHVNWFRKSAEGKFM
WPGYGENSRVLEWILRRVNGESCYVDSAIGHIPAEGALNLDGMKDKVDVK
EIFSLPKEFWSQEVKDIRTYFESQVGADLPASIYQQLDELSSRVDNL*
BS13886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pepck-PA | 647 | CG17725-PA | 1..647 | 1..647 | 3448 | 100 | Plus |
CG10924-PA | 638 | CG10924-PA | 11..638 | 16..647 | 2447 | 70 | Plus |
CG10924-PB | 563 | CG10924-PB | 1..563 | 85..647 | 2315 | 73.6 | Plus |