Clone BS13887 Report

Search the DGRC for BS13887

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG4660-RA
Protein status:BS13887.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13887.3prime Sequence

635 bp (568 high quality bases) assembled on 2006-10-13

> BS13887.3prime
ATGGTCTAGAAAGCTTTCAGCAGCCACTGCGTAGATTCTTGCTCGACATA
TCGTTGTACTCGATCCACTTGGCCAACTCCGGCGGCAGCGAGGGCTTCAG
CTTCAAGCAGTGCGCCGCGGTCGCGCTGGCCGTGGCACCCGTGCCCGCCG
CTCCACCGCTCGTCGTCCCATGTCCGTTCTCCGCCAGCGAAGTGTCCATC
GCGGGATTGCTTATGCCACCAGCTGCCGGCGACGGAGCAGCCAGCGAGGT
CAGCACCGTCGCCCGGAATCCGTTGGAGGAGGTCCTGGGCAGTAGCTCCG
ACATCACCGCCTCCATGGACACGTCGATCACCCGCTGCCGGCAGATGGCG
ATGCAGTGCACGAACTTGTCCGATGGACGCACAAAGCGGTGCTCCATGAA
GAGTGACTGCTCGTCCCAGTAAATAATCCGCGAAATAATGTTAAAGCGGT
GAAAGGGGCGGATGAAGCGACGGTAGCGTATGGTGGCCGCCCCCTGAAAA
ACGGAACCGCCCATTCCCGTGATGGTGCGGTACAGGTTGGTCCGTTCGTA
AAAGTCCACGCGGGCGAAGTCCCACTCGCGGAAGTAGCGAGCGTTGTTCA
TGTGGTACAACAAAATGTCCACATCGTTGGTGAGG

BS13887.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-PA 786 CG4660-RA 168..786 635..17 2995 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-RA 1275 CG4660-RA 291..909 635..17 3035 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6079074..6079485 17..428 2060 100 Plus
X 23542271 X 6079611..6079818 428..635 980 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 17:48:15 has no hits.

BS13887.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for BS13887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-PA 168..786 17..635 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:38 Download gff for BS13887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 291..909 17..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:17 Download gff for BS13887.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 291..909 17..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:17 Download gff for BS13887.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6079074..6079484 17..427 100 <- Plus
X 6079611..6079818 428..635 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:38 Download gff for BS13887.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5973107..5973517 17..427 100 <- Plus
arm_X 5973644..5973851 428..635 98   Plus

BS13887.5prime Sequence

602 bp (582 high quality bases) assembled on 2006-10-13

> BS13887.5prime
GAAGTTATCAGTCGACATGGAGCAGCTGTGCTACCTGGCGCTGAGCGTCC
TTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACTTCCTG
CGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGATGCCA
CATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGATGTGG
ACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGCTGGAC
TTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACCATCAC
GGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTACCGTC
GCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTATTTAC
TGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCATCGGA
CAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGACGTGT
CCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCAACGGA
TTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCAGCTGG
TG

BS13887.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-PA 786 CG4660-RA 1..586 17..602 2930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-RA 1275 CG4660-RA 124..709 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6079611..6079826 391..176 1080 100 Minus
X 23542271 X 6079274..6079485 602..391 1060 100 Minus
X 23542271 X 6080335..6080496 178..17 810 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:42 has no hits.

BS13887.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for BS13887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-PA 1..586 17..602 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:33 Download gff for BS13887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 117..709 9..602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:45 Download gff for BS13887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 117..709 9..602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:45 Download gff for BS13887.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6079274..6079484 392..602 100 <- Minus
X 6079611..6079825 177..391 100 <- Minus
X 6080337..6080503 9..176 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:33 Download gff for BS13887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5973307..5973517 392..602 100 <- Minus
arm_X 5973644..5973858 177..391 100 <- Minus
arm_X 5974370..5974536 9..176 98   Minus

BS13887.complete Sequence

818 bp assembled on 2006-11-01

GenBank Submission: FJ637546

> BS13887.complete
GAAGTTATCAGTCGACATGGAGCAGCTGTGCTACCTGGCGCTGAGCGTCC
TTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACTTCCTG
CGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGATGCCA
CATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGATGTGG
ACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGCTGGAC
TTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACCATCAC
GGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTACCGTC
GCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTATTTAC
TGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCATCGGA
CAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGACGTGT
CCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCAACGGA
TTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCAGCTGG
TGGCATAAGCAATCCCGCGATGGACACTTCGCTGGCGGAGAACGGACATG
GGACGACGAGCGGTGGAGCGGCGGGCACGGGTGCCACGGCCAGCGCGACC
GCGGCGCACTGCTTGAAGCTGAAGCCCTCGCTGCCGCCGGAGTTGGCCAA
GTGGATCGAGTACAACGATATGTCGAGCAAGAATCTACGCAGTGGCTGCT
GAAAGCTTTCTAGACCAT

BS13887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-RA 786 CG4660-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-RA 1275 CG4660-RA 124..909 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6079074..6079485 802..391 2060 100 Minus
X 23542271 X 6079611..6079826 391..176 1080 100 Minus
X 23542271 X 6080335..6080496 178..17 810 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:36 has no hits.

BS13887.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:55 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:16 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 112..904 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:02 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 124..908 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:55 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 112..904 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:18 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
CG4660-RA 124..908 17..801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:18 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
X 6079075..6079484 392..801 100 <- Minus
X 6079611..6079825 177..391 100 <- Minus
X 6080337..6080496 17..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:02 Download gff for BS13887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5973108..5973517 392..801 100 <- Minus
arm_X 5973644..5973858 177..391 100 <- Minus
arm_X 5974370..5974529 17..176 100   Minus

BS13887.pep Sequence

Translation from 16 to 801

> BS13887.pep
MEQLCYLALSVLLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTT
TVNGLCLTNDVDTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGS
VFQGAATIRYRRFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHC
IAICRQRVIDVSMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNP
AMDTSLAENGHGTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYN
DMSSKNLRSGC*

BS13887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4660-PA 261 CG4660-PA 1..261 1..261 1362 100 Plus
CG4666-PB 193 CG4666-PB 1..159 9..167 356 39.6 Plus
CG4666-PA 193 CG4666-PA 1..159 9..167 356 39.6 Plus