Clone Sequence Records
BS13887.3prime Sequence
635 bp (568 high quality bases) assembled on 2006-10-13
> BS13887.3prime
ATGGTCTAGAAAGCTTTCAGCAGCCACTGCGTAGATTCTTGCTCGACATA
TCGTTGTACTCGATCCACTTGGCCAACTCCGGCGGCAGCGAGGGCTTCAG
CTTCAAGCAGTGCGCCGCGGTCGCGCTGGCCGTGGCACCCGTGCCCGCCG
CTCCACCGCTCGTCGTCCCATGTCCGTTCTCCGCCAGCGAAGTGTCCATC
GCGGGATTGCTTATGCCACCAGCTGCCGGCGACGGAGCAGCCAGCGAGGT
CAGCACCGTCGCCCGGAATCCGTTGGAGGAGGTCCTGGGCAGTAGCTCCG
ACATCACCGCCTCCATGGACACGTCGATCACCCGCTGCCGGCAGATGGCG
ATGCAGTGCACGAACTTGTCCGATGGACGCACAAAGCGGTGCTCCATGAA
GAGTGACTGCTCGTCCCAGTAAATAATCCGCGAAATAATGTTAAAGCGGT
GAAAGGGGCGGATGAAGCGACGGTAGCGTATGGTGGCCGCCCCCTGAAAA
ACGGAACCGCCCATTCCCGTGATGGTGCGGTACAGGTTGGTCCGTTCGTA
AAAGTCCACGCGGGCGAAGTCCCACTCGCGGAAGTAGCGAGCGTTGTTCA
TGTGGTACAACAAAATGTCCACATCGTTGGTGAGG
BS13887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-PA | 786 | CG4660-RA | 168..786 | 635..17 | 2995 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-RA | 1275 | CG4660-RA | 291..909 | 635..17 | 3035 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6079074..6079485 | 17..428 | 2060 | 100 | Plus |
X | 23542271 | X | 6079611..6079818 | 428..635 | 980 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:48:15 has no hits.
BS13887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for
BS13887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-PA | 168..786 | 17..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:38 Download gff for
BS13887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 291..909 | 17..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:17 Download gff for
BS13887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 291..909 | 17..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:17 Download gff for
BS13887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6079074..6079484 | 17..427 | 100 | <- | Plus |
X | 6079611..6079818 | 428..635 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:38 Download gff for
BS13887.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5973107..5973517 | 17..427 | 100 | <- | Plus |
arm_X | 5973644..5973851 | 428..635 | 98 | | Plus |
BS13887.5prime Sequence
602 bp (582 high quality bases) assembled on 2006-10-13
> BS13887.5prime
GAAGTTATCAGTCGACATGGAGCAGCTGTGCTACCTGGCGCTGAGCGTCC
TTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACTTCCTG
CGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGATGCCA
CATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGATGTGG
ACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGCTGGAC
TTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACCATCAC
GGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTACCGTC
GCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTATTTAC
TGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCATCGGA
CAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGACGTGT
CCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCAACGGA
TTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCAGCTGG
TG
BS13887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-PA | 786 | CG4660-RA | 1..586 | 17..602 | 2930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-RA | 1275 | CG4660-RA | 124..709 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6079611..6079826 | 391..176 | 1080 | 100 | Minus |
X | 23542271 | X | 6079274..6079485 | 602..391 | 1060 | 100 | Minus |
X | 23542271 | X | 6080335..6080496 | 178..17 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:42 has no hits.
BS13887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:20 Download gff for
BS13887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-PA | 1..586 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:33 Download gff for
BS13887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 117..709 | 9..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:45 Download gff for
BS13887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 117..709 | 9..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:45 Download gff for
BS13887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6079274..6079484 | 392..602 | 100 | <- | Minus |
X | 6079611..6079825 | 177..391 | 100 | <- | Minus |
X | 6080337..6080503 | 9..176 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:33 Download gff for
BS13887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5973307..5973517 | 392..602 | 100 | <- | Minus |
arm_X | 5973644..5973858 | 177..391 | 100 | <- | Minus |
arm_X | 5974370..5974536 | 9..176 | 98 | | Minus |
BS13887.complete Sequence
818 bp assembled on 2006-11-01
GenBank Submission: FJ637546
> BS13887.complete
GAAGTTATCAGTCGACATGGAGCAGCTGTGCTACCTGGCGCTGAGCGTCC
TTCTGGCCATCATCGTGGTCTACGGACTCCTGGAGCTCCACTACTTCCTG
CGCATGTGCCTCTGTGTTTTGCTCGCCCGGTTTGTGAAGAGGCGATGCCA
CATCCTGGACACCACCACGGTTAACGGTCTCTGCCTCACCAACGATGTGG
ACACTTTGTTGTACCACATGAACAACGCTCGCTACTTCCGCGAGCTGGAC
TTCGCCCGCGTGGACTTTTACGAACGGACCAACCTGTACCGCACCATCAC
GGGAATGGGCGGTTCCGTTTTCCAGGGGGCGGCCACCATACGCTACCGTC
GCTTCATCCGCCCCTTTCACCGCTTTAACATTATTTCGCGGATTATTTAC
TGGGACGAGCAGTCACTCTTCATGGAGCACCGCTTTGTGCGTCCATCGGA
CAAGTTCGTGCACTGCATCGCCATCTGCCGGCAGCGGGTGATCGACGTGT
CCATGGAGGCGGTGATGTCGGAGCTACTGCCCAGGACCTCCTCCAACGGA
TTCCGGGCGACGGTGCTGACCTCGCTGGCTGCTCCGTCGCCGGCAGCTGG
TGGCATAAGCAATCCCGCGATGGACACTTCGCTGGCGGAGAACGGACATG
GGACGACGAGCGGTGGAGCGGCGGGCACGGGTGCCACGGCCAGCGCGACC
GCGGCGCACTGCTTGAAGCTGAAGCCCTCGCTGCCGCCGGAGTTGGCCAA
GTGGATCGAGTACAACGATATGTCGAGCAAGAATCTACGCAGTGGCTGCT
GAAAGCTTTCTAGACCAT
BS13887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-RA | 786 | CG4660-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-RA | 1275 | CG4660-RA | 124..909 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6079074..6079485 | 802..391 | 2060 | 100 | Minus |
X | 23542271 | X | 6079611..6079826 | 391..176 | 1080 | 100 | Minus |
X | 23542271 | X | 6080335..6080496 | 178..17 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:54:36 has no hits.
BS13887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:55 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:16 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 112..904 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:02 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 124..908 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:55 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 112..904 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:18 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4660-RA | 124..908 | 17..801 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:18 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6079075..6079484 | 392..801 | 100 | <- | Minus |
X | 6079611..6079825 | 177..391 | 100 | <- | Minus |
X | 6080337..6080496 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:02 Download gff for
BS13887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5973108..5973517 | 392..801 | 100 | <- | Minus |
arm_X | 5973644..5973858 | 177..391 | 100 | <- | Minus |
arm_X | 5974370..5974529 | 17..176 | 100 | | Minus |
BS13887.pep Sequence
Translation from 16 to 801
> BS13887.pep
MEQLCYLALSVLLAIIVVYGLLELHYFLRMCLCVLLARFVKRRCHILDTT
TVNGLCLTNDVDTLLYHMNNARYFRELDFARVDFYERTNLYRTITGMGGS
VFQGAATIRYRRFIRPFHRFNIISRIIYWDEQSLFMEHRFVRPSDKFVHC
IAICRQRVIDVSMEAVMSELLPRTSSNGFRATVLTSLAAPSPAAGGISNP
AMDTSLAENGHGTTSGGAAGTGATASATAAHCLKLKPSLPPELAKWIEYN
DMSSKNLRSGC*
BS13887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4660-PA | 261 | CG4660-PA | 1..261 | 1..261 | 1362 | 100 | Plus |
CG4666-PB | 193 | CG4666-PB | 1..159 | 9..167 | 356 | 39.6 | Plus |
CG4666-PA | 193 | CG4666-PA | 1..159 | 9..167 | 356 | 39.6 | Plus |