Clone BS13891 Report

Search the DGRC for BS13891

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptinaD-RA
Protein status:BS13891.pep: full length peptide match
Sequenced Size:2057

Clone Sequence Records

BS13891.complete Sequence

2057 bp assembled on 2009-12-07

GenBank Submission: KX804853

> BS13891.complete
GAAGTTATCAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGG
GTGAGCTCATTCACATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTC
GGCATCTGCATAGTGCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGAC
CACCGGCATCTTCATCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGT
GTGGTCGCCTAAAGGTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGAT
GTGCGCAACTCCACCGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGA
CTTCAAGATCGAACTGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGC
AGGCCAAGTCAGATCCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAG
TTCAACCAGGAGCAGACCACCAACAACAATGCGTCCGGAGGTCAGGGAAT
GGGGCAAGGTCAGGGTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGC
AATCGATGCAGAAGCGGAATACCACATTCACGGCCTCGATGCGTCAGAAG
CATAGTAACTACGCCGACGAGGATGACGAGGACACCCGGGACATGACCGG
TCGCATTCGCACGGAGGCGGGTTATGAGATCGATCGAGCATCCGCCGGTA
ATTGCAAACTCAACAAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGAT
GAATTTGGCTACACGATGGCTAAGATCAACAAGCGGTACAACATGATGAA
GGATCTGCGCAGGATCGAGGTCCAGAGGGACGCCAGCAAGCCACTGGGAC
TCGCACTCGCTGGCCACAAGGACCGCCAGAAGATGGCCTGCTTTGTTGCC
GGTGTGGATCCCAACGGAGCATTGGGTAGCGTGGACATCAAACCGGGCGA
CGAGATCGTCGAGGTCAACGGCAATGTGCTGAAGAATCGCTGCCACTTGA
ACGCTTCCGCCGTGTTCAAGAACGTGGATGGGGATAAGCTCGTGATGATC
ACCTCGCGACGCAAGCCCAACGATGAGGGCATGTGCGTCAAGCCCATCAA
GAAGTTCCCCACCGCGTCTGATGAGACTAAGTTTATCTTCGACCAGTTTC
CCAAGGCGCGCACGGTGCAGGTGCGCAAGGAGGGTTTCCTGGGCATCATG
GTCATCTATGGCAAGCACGCTGAGGTGGGAAGTGGCATTTTCATCTCGGA
TCTGAGAGAGGGATCGAATGCCGAGTTGGCGGGCGTGAAAGTGGGCGACA
TGCTGCTGGCCGTTAATCAGGATGTAACACTGGAATCCAACTACGATGAT
GCTACTGGACTGCTTAAACGTGCCGAGGGCGTAGTGACCATGATTCTATT
GACTCTCAAGAGCGAGGAGGCGATAAAGGCTGAGAAGGCGGCGGAAGAGA
AAAAGAAGGAGGAGGCCAAGAAAGAGGAGGAAAAGCCACAGGAACCCGCC
ACAGCCGAGATCAAGCCGAACAAAAAGATACTCATTGAGTTGAAGGTGGA
AAAGAAGCCAATGGGCGTCATCGTCTGCGGCGGCAAGAACAACCATGTCA
CGACTGGCTGTGTAATCACCCACGTTTATCCGGAGGGACAAGTGGCAGCC
GACAAGCGCCTCAAGATCTTTGACCACATTTGCGATATAAATGGTACGCC
AATCCACGTGGGATCCATGACGACACTGAAGGTCCATCAGTTATTCCACA
CCACATACGAGAAAGCGGTCACCCTAACGGTCTTCCGCGCTGATCCTCCG
GAGCTGGAAAAGTTTAACGTTGACCTTATGAAAAAAGCAGGCAAGGAGCT
GGGCCTGTCGCTTTCTCCCAACGAAATTGGATGTACCATCGCGGACTTGA
TTCAAGGACAATACCCGGAGATAGACAGCAAACTGCAGCGCGGCGATATT
ATCACCAAATTCAATGGCGATGCCTTGGAGGGTCTTCCGTTCCAGGTGTG
CTACGCCTTGTTCAAGGGAGCCAACGGCAAGGTATCGATGGAAGTGACAC
GACCCAAGCCCACTCTACGTACGGAGGCACCCAAGGCCTAGAAGCTTTCT
AGACCAT

BS13891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RA 2025 CG3504-PA 1..2025 17..2041 10125 100 Plus
inaD-RB 2061 CG3504-PB 73..2061 53..2041 9945 100 Plus
inaD-RB 2061 CG3504-PB 1..37 17..53 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RA 2295 CG3504-RA 197..2222 17..2042 10130 100 Plus
inaD-RB 2331 CG3504-RB 269..2258 53..2042 9950 100 Plus
inaD-RB 2331 CG3504-RB 197..233 17..53 185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22857601..22858176 628..53 2880 100 Minus
2R 25286936 2R 22857038..22857394 1075..719 1785 100 Minus
2R 25286936 2R 22856024..22856321 1849..1552 1490 100 Minus
2R 25286936 2R 22856748..22856975 1301..1074 1140 100 Minus
2R 25286936 2R 22855761..22855954 2042..1849 970 100 Minus
2R 25286936 2R 22856381..22856521 1552..1412 705 100 Minus
2R 25286936 2R 22856578..22856689 1412..1301 560 100 Minus
2R 25286936 2R 22857450..22857548 725..627 480 99 Minus
2R 25286936 2R 22858562..22858598 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:14:22 has no hits.

BS13891.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:17 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 197..2221 17..2041 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:26 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 197..2221 17..2041 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:22 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 197..2221 17..2041 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:05 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 197..2221 17..2041 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:05 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22857456..22857546 629..719 100 <- Minus
2R 22857038..22857393 720..1075 100 <- Minus
2R 22855762..22855953 1850..2041 100 <- Minus
2R 22856024..22856320 1553..1849 100 <- Minus
2R 22856381..22856520 1413..1552 100 <- Minus
2R 22856578..22856689 1301..1412 100 <- Minus
2R 22856749..22856973 1076..1300 100 <- Minus
2R 22857601..22858175 54..628 100 <- Minus
2R 22858562..22858598 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:26 Download gff for BS13891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18744561..18744916 720..1075 100 <- Minus
arm_2R 18744979..18745069 629..719 100 <- Minus
arm_2R 18743285..18743476 1850..2041 100 <- Minus
arm_2R 18743547..18743843 1553..1849 100 <- Minus
arm_2R 18743904..18744043 1413..1552 100 <- Minus
arm_2R 18744101..18744212 1301..1412 100 <- Minus
arm_2R 18744272..18744496 1076..1300 100 <- Minus
arm_2R 18745124..18745698 54..628 100 <- Minus
arm_2R 18746085..18746121 17..53 100   Minus

BS13891.3prime Sequence

700 bp (635 high quality bases) assembled on 2006-10-13

> BS13891.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGGGTGCCTCCGTACGTAGAGTGGGC
TTGGGTCGTGTCACTTCCATCGATACCTTGCCGTTGGCTCCCTTGAACAA
GGCGTAGCACACCTGGAACGGAAGACCCTCCAAGGCATCGCCATTGAATT
TGGTGATAATATCGCCGCGCTGCAGTTTGCTGTCTATCTCCGGGTATTGT
CCTTGAATCAAGTCCGCGATGGTACATCCAATTTCGTTGGGAGAAAGCGA
CAGGCCCAGCTCCTTGCCTGCTTTTTTCATAAGGTCAACGTTAAACTTTT
CCAGCTCCGGAGGATCAGCGCGGAAGACCGTTAGGGTGACCGCTTTCTCG
TATGTGGTGTGGAATAACTGATGGACCTTCAGTGTCGTCATGGATCCCAC
GTGGATTGGCGTACCATTTATATCGCAAATGTGGTCAAAGATCTTGAGGC
GCTTGTCGGCTGCCACTTGTCCCTCCGGATAAACGTGGGTGATTACACAG
CCAGTCGTGACATGGTTGTTCTTGCCGCCGCAGACGATGACGCCCATTGG
CTTCTTTTCCACCTTCAACTCAATGAGTATCTTTTTGTTCGGCTTGATCT
CGGCTGTGGCGGGTTCCTGTGGCTTTTCCTCCTCTTTCTTGGCCTCCTCC
TTCTTTTTCTCTTCCGCCGCCTTCTCAGCCTTTATCGCCTCCTCGCTCTT

BS13891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3504-PA 2025 inaD-RA 1342..2025 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RB 2331 CG3504-RB 1574..2258 700..16 3425 100 Minus
inaD-RA 2295 CG3504-RA 1538..2222 700..16 3425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22856024..22856321 209..506 1490 100 Plus
2R 25286936 2R 22855761..22855954 16..209 970 100 Plus
2R 25286936 2R 22856381..22856521 506..646 705 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:39:33 has no hits.

BS13891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:22 Download gff for BS13891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3504-PA 1342..2025 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:39 Download gff for BS13891.3prime
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1538..2229 9..700 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:46 Download gff for BS13891.3prime
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 1538..2229 9..700 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:46 Download gff for BS13891.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22855754..22855953 9..208 98 <- Plus
2R 22856024..22856320 209..505 100 <- Plus
2R 22856381..22856520 506..645 100 <- Plus
2R 22856578..22856632 646..700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:39 Download gff for BS13891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18743277..18743476 9..208 98 <- Plus
arm_2R 18743547..18743843 209..505 100 <- Plus
arm_2R 18743904..18744043 506..645 100 <- Plus
arm_2R 18744101..18744155 646..700 100   Plus

BS13891.5prime Sequence

718 bp (617 high quality bases) assembled on 2006-10-13

> BS13891.5prime
GAAGTTATCAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGG
GTGAGCTCATTCACATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTC
GGCATCTGCATAGTGCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGAC
CACCGGCATCTTCATCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGT
GTGGTCGCCTAAAGGTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGAT
GTGCGCAACTCCACCGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGA
CTTCAAGATCGAACTGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGC
AGGCCAAGTCAGATCCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAG
TTCAACCAGGAGCAGACCACCAACAACAATGCGTCCGGAGGTCAGGGAAT
GGGGCAAGGTCAGGGTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGC
AATCGATGCAGAAGCGGAATACCACATTCACGGCCTCGATGCGTCAGAAG
CATAGTAACTACGCCGACGAGGATGACGAGGACACCCGGGACATGACCGG
TCGCATTCGCACGGGAGGCGGGTTATGAGATCGATCGAGCATCCGCCGGT
AATTGGCAACTCAACCAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGA
TGATTTTGGGCTACCCCA

BS13891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3504-PA 2025 inaD-RA 1..692 17..709 3325 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RA 2295 CG3504-RA 197..888 17..709 3380 99.3 Plus
inaD-RB 2331 CG3504-RB 269..924 53..709 3200 99.2 Plus
inaD-RB 2331 CG3504-RB 197..233 17..53 185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22857601..22858176 629..53 2835 99.8 Minus
2R 25286936 2R 22857467..22857548 709..628 350 95.1 Minus
2R 25286936 2R 22858562..22858598 53..17 185 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:12:33 has no hits.

BS13891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:23 Download gff for BS13891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3504-PA 1..698 17..717 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:00 Download gff for BS13891.5prime
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 189..894 9..717 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:55 Download gff for BS13891.5prime
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 189..894 9..717 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:55 Download gff for BS13891.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22857460..22857546 630..717 92 <- Minus
2R 22857601..22858175 54..629 99 <- Minus
2R 22858562..22858606 9..53 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:00 Download gff for BS13891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18744983..18745069 630..717 92 <- Minus
arm_2R 18745124..18745698 54..629 99 <- Minus
arm_2R 18746085..18746129 9..53 93   Minus

BS13891.pep Sequence

Translation from 16 to 2040

> BS13891.pep
MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI
KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL
EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG
QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE
AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI
EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV
NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA
SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS
NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE
EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG
VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS
MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS
PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK
GANGKVSMEVTRPKPTLRTEAPKA*

BS13891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-PA 674 CG3504-PA 1..674 1..674 3476 100 Plus
inaD-PB 686 CG3504-PB 1..686 1..674 3453 98.3 Plus