Clone Sequence Records
BS13891.complete Sequence
2057 bp assembled on 2009-12-07
GenBank Submission: KX804853
> BS13891.complete
GAAGTTATCAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGG
GTGAGCTCATTCACATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTC
GGCATCTGCATAGTGCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGAC
CACCGGCATCTTCATCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGT
GTGGTCGCCTAAAGGTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGAT
GTGCGCAACTCCACCGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGA
CTTCAAGATCGAACTGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGC
AGGCCAAGTCAGATCCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAG
TTCAACCAGGAGCAGACCACCAACAACAATGCGTCCGGAGGTCAGGGAAT
GGGGCAAGGTCAGGGTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGC
AATCGATGCAGAAGCGGAATACCACATTCACGGCCTCGATGCGTCAGAAG
CATAGTAACTACGCCGACGAGGATGACGAGGACACCCGGGACATGACCGG
TCGCATTCGCACGGAGGCGGGTTATGAGATCGATCGAGCATCCGCCGGTA
ATTGCAAACTCAACAAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGAT
GAATTTGGCTACACGATGGCTAAGATCAACAAGCGGTACAACATGATGAA
GGATCTGCGCAGGATCGAGGTCCAGAGGGACGCCAGCAAGCCACTGGGAC
TCGCACTCGCTGGCCACAAGGACCGCCAGAAGATGGCCTGCTTTGTTGCC
GGTGTGGATCCCAACGGAGCATTGGGTAGCGTGGACATCAAACCGGGCGA
CGAGATCGTCGAGGTCAACGGCAATGTGCTGAAGAATCGCTGCCACTTGA
ACGCTTCCGCCGTGTTCAAGAACGTGGATGGGGATAAGCTCGTGATGATC
ACCTCGCGACGCAAGCCCAACGATGAGGGCATGTGCGTCAAGCCCATCAA
GAAGTTCCCCACCGCGTCTGATGAGACTAAGTTTATCTTCGACCAGTTTC
CCAAGGCGCGCACGGTGCAGGTGCGCAAGGAGGGTTTCCTGGGCATCATG
GTCATCTATGGCAAGCACGCTGAGGTGGGAAGTGGCATTTTCATCTCGGA
TCTGAGAGAGGGATCGAATGCCGAGTTGGCGGGCGTGAAAGTGGGCGACA
TGCTGCTGGCCGTTAATCAGGATGTAACACTGGAATCCAACTACGATGAT
GCTACTGGACTGCTTAAACGTGCCGAGGGCGTAGTGACCATGATTCTATT
GACTCTCAAGAGCGAGGAGGCGATAAAGGCTGAGAAGGCGGCGGAAGAGA
AAAAGAAGGAGGAGGCCAAGAAAGAGGAGGAAAAGCCACAGGAACCCGCC
ACAGCCGAGATCAAGCCGAACAAAAAGATACTCATTGAGTTGAAGGTGGA
AAAGAAGCCAATGGGCGTCATCGTCTGCGGCGGCAAGAACAACCATGTCA
CGACTGGCTGTGTAATCACCCACGTTTATCCGGAGGGACAAGTGGCAGCC
GACAAGCGCCTCAAGATCTTTGACCACATTTGCGATATAAATGGTACGCC
AATCCACGTGGGATCCATGACGACACTGAAGGTCCATCAGTTATTCCACA
CCACATACGAGAAAGCGGTCACCCTAACGGTCTTCCGCGCTGATCCTCCG
GAGCTGGAAAAGTTTAACGTTGACCTTATGAAAAAAGCAGGCAAGGAGCT
GGGCCTGTCGCTTTCTCCCAACGAAATTGGATGTACCATCGCGGACTTGA
TTCAAGGACAATACCCGGAGATAGACAGCAAACTGCAGCGCGGCGATATT
ATCACCAAATTCAATGGCGATGCCTTGGAGGGTCTTCCGTTCCAGGTGTG
CTACGCCTTGTTCAAGGGAGCCAACGGCAAGGTATCGATGGAAGTGACAC
GACCCAAGCCCACTCTACGTACGGAGGCACCCAAGGCCTAGAAGCTTTCT
AGACCAT
BS13891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaD-RA | 2025 | CG3504-PA | 1..2025 | 17..2041 | 10125 | 100 | Plus |
inaD-RB | 2061 | CG3504-PB | 73..2061 | 53..2041 | 9945 | 100 | Plus |
inaD-RB | 2061 | CG3504-PB | 1..37 | 17..53 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaD-RA | 2295 | CG3504-RA | 197..2222 | 17..2042 | 10130 | 100 | Plus |
inaD-RB | 2331 | CG3504-RB | 269..2258 | 53..2042 | 9950 | 100 | Plus |
inaD-RB | 2331 | CG3504-RB | 197..233 | 17..53 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22857601..22858176 | 628..53 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 22857038..22857394 | 1075..719 | 1785 | 100 | Minus |
2R | 25286936 | 2R | 22856024..22856321 | 1849..1552 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 22856748..22856975 | 1301..1074 | 1140 | 100 | Minus |
2R | 25286936 | 2R | 22855761..22855954 | 2042..1849 | 970 | 100 | Minus |
2R | 25286936 | 2R | 22856381..22856521 | 1552..1412 | 705 | 100 | Minus |
2R | 25286936 | 2R | 22856578..22856689 | 1412..1301 | 560 | 100 | Minus |
2R | 25286936 | 2R | 22857450..22857548 | 725..627 | 480 | 99 | Minus |
2R | 25286936 | 2R | 22858562..22858598 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:22 has no hits.
BS13891.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:17 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 197..2221 | 17..2041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:26 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 197..2221 | 17..2041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:22 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 197..2221 | 17..2041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:05 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 197..2221 | 17..2041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:05 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22857456..22857546 | 629..719 | 100 | <- | Minus |
2R | 22857038..22857393 | 720..1075 | 100 | <- | Minus |
2R | 22855762..22855953 | 1850..2041 | 100 | <- | Minus |
2R | 22856024..22856320 | 1553..1849 | 100 | <- | Minus |
2R | 22856381..22856520 | 1413..1552 | 100 | <- | Minus |
2R | 22856578..22856689 | 1301..1412 | 100 | <- | Minus |
2R | 22856749..22856973 | 1076..1300 | 100 | <- | Minus |
2R | 22857601..22858175 | 54..628 | 100 | <- | Minus |
2R | 22858562..22858598 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:26 Download gff for
BS13891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18744561..18744916 | 720..1075 | 100 | <- | Minus |
arm_2R | 18744979..18745069 | 629..719 | 100 | <- | Minus |
arm_2R | 18743285..18743476 | 1850..2041 | 100 | <- | Minus |
arm_2R | 18743547..18743843 | 1553..1849 | 100 | <- | Minus |
arm_2R | 18743904..18744043 | 1413..1552 | 100 | <- | Minus |
arm_2R | 18744101..18744212 | 1301..1412 | 100 | <- | Minus |
arm_2R | 18744272..18744496 | 1076..1300 | 100 | <- | Minus |
arm_2R | 18745124..18745698 | 54..628 | 100 | <- | Minus |
arm_2R | 18746085..18746121 | 17..53 | 100 | | Minus |
BS13891.3prime Sequence
700 bp (635 high quality bases) assembled on 2006-10-13
> BS13891.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGGGTGCCTCCGTACGTAGAGTGGGC
TTGGGTCGTGTCACTTCCATCGATACCTTGCCGTTGGCTCCCTTGAACAA
GGCGTAGCACACCTGGAACGGAAGACCCTCCAAGGCATCGCCATTGAATT
TGGTGATAATATCGCCGCGCTGCAGTTTGCTGTCTATCTCCGGGTATTGT
CCTTGAATCAAGTCCGCGATGGTACATCCAATTTCGTTGGGAGAAAGCGA
CAGGCCCAGCTCCTTGCCTGCTTTTTTCATAAGGTCAACGTTAAACTTTT
CCAGCTCCGGAGGATCAGCGCGGAAGACCGTTAGGGTGACCGCTTTCTCG
TATGTGGTGTGGAATAACTGATGGACCTTCAGTGTCGTCATGGATCCCAC
GTGGATTGGCGTACCATTTATATCGCAAATGTGGTCAAAGATCTTGAGGC
GCTTGTCGGCTGCCACTTGTCCCTCCGGATAAACGTGGGTGATTACACAG
CCAGTCGTGACATGGTTGTTCTTGCCGCCGCAGACGATGACGCCCATTGG
CTTCTTTTCCACCTTCAACTCAATGAGTATCTTTTTGTTCGGCTTGATCT
CGGCTGTGGCGGGTTCCTGTGGCTTTTCCTCCTCTTTCTTGGCCTCCTCC
TTCTTTTTCTCTTCCGCCGCCTTCTCAGCCTTTATCGCCTCCTCGCTCTT
BS13891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3504-PA | 2025 | inaD-RA | 1342..2025 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaD-RB | 2331 | CG3504-RB | 1574..2258 | 700..16 | 3425 | 100 | Minus |
inaD-RA | 2295 | CG3504-RA | 1538..2222 | 700..16 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22856024..22856321 | 209..506 | 1490 | 100 | Plus |
2R | 25286936 | 2R | 22855761..22855954 | 16..209 | 970 | 100 | Plus |
2R | 25286936 | 2R | 22856381..22856521 | 506..646 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:39:33 has no hits.
BS13891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:22 Download gff for
BS13891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3504-PA | 1342..2025 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:39 Download gff for
BS13891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 1538..2229 | 9..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:46 Download gff for
BS13891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 1538..2229 | 9..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:46 Download gff for
BS13891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22855754..22855953 | 9..208 | 98 | <- | Plus |
2R | 22856024..22856320 | 209..505 | 100 | <- | Plus |
2R | 22856381..22856520 | 506..645 | 100 | <- | Plus |
2R | 22856578..22856632 | 646..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:39 Download gff for
BS13891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18743277..18743476 | 9..208 | 98 | <- | Plus |
arm_2R | 18743547..18743843 | 209..505 | 100 | <- | Plus |
arm_2R | 18743904..18744043 | 506..645 | 100 | <- | Plus |
arm_2R | 18744101..18744155 | 646..700 | 100 | | Plus |
BS13891.5prime Sequence
718 bp (617 high quality bases) assembled on 2006-10-13
> BS13891.5prime
GAAGTTATCAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGG
GTGAGCTCATTCACATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTC
GGCATCTGCATAGTGCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGAC
CACCGGCATCTTCATCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGT
GTGGTCGCCTAAAGGTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGAT
GTGCGCAACTCCACCGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGA
CTTCAAGATCGAACTGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGC
AGGCCAAGTCAGATCCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAG
TTCAACCAGGAGCAGACCACCAACAACAATGCGTCCGGAGGTCAGGGAAT
GGGGCAAGGTCAGGGTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGC
AATCGATGCAGAAGCGGAATACCACATTCACGGCCTCGATGCGTCAGAAG
CATAGTAACTACGCCGACGAGGATGACGAGGACACCCGGGACATGACCGG
TCGCATTCGCACGGGAGGCGGGTTATGAGATCGATCGAGCATCCGCCGGT
AATTGGCAACTCAACCAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGA
TGATTTTGGGCTACCCCA
BS13891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3504-PA | 2025 | inaD-RA | 1..692 | 17..709 | 3325 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaD-RA | 2295 | CG3504-RA | 197..888 | 17..709 | 3380 | 99.3 | Plus |
inaD-RB | 2331 | CG3504-RB | 269..924 | 53..709 | 3200 | 99.2 | Plus |
inaD-RB | 2331 | CG3504-RB | 197..233 | 17..53 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22857601..22858176 | 629..53 | 2835 | 99.8 | Minus |
2R | 25286936 | 2R | 22857467..22857548 | 709..628 | 350 | 95.1 | Minus |
2R | 25286936 | 2R | 22858562..22858598 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:12:33 has no hits.
BS13891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:23 Download gff for
BS13891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3504-PA | 1..698 | 17..717 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:00 Download gff for
BS13891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 189..894 | 9..717 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:55 Download gff for
BS13891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaD-RA | 189..894 | 9..717 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:55 Download gff for
BS13891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22857460..22857546 | 630..717 | 92 | <- | Minus |
2R | 22857601..22858175 | 54..629 | 99 | <- | Minus |
2R | 22858562..22858606 | 9..53 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:00 Download gff for
BS13891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18744983..18745069 | 630..717 | 92 | <- | Minus |
arm_2R | 18745124..18745698 | 54..629 | 99 | <- | Minus |
arm_2R | 18746085..18746129 | 9..53 | 93 | | Minus |
BS13891.pep Sequence
Translation from 16 to 2040
> BS13891.pep
MVQFLGKQGTAGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFI
KGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL
EIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQG
QGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDEDTRDMTGRIRTE
AGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKINKRYNMMKDLRRI
EVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGSVDIKPGDEIVEV
NGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEGMCVKPIKKFPTA
SDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVGSGIFISDLREGS
NAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEGVVTMILLTLKSE
EAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKILIELKVEKKPMG
VIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS
MTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLS
PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK
GANGKVSMEVTRPKPTLRTEAPKA*
BS13891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaD-PA | 674 | CG3504-PA | 1..674 | 1..674 | 3476 | 100 | Plus |
inaD-PB | 686 | CG3504-PB | 1..686 | 1..674 | 3453 | 98.3 | Plus |