Clone BS13896 Report

Search the DGRC for BS13896

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:138
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptSyngr-RA
Protein status:BS13896.pep: full length peptide match
Sequenced Size:758

Clone Sequence Records

BS13896.complete Sequence

758 bp assembled on 2010-02-09

GenBank Submission: KX804534

> BS13896.complete
GAAGTTATCAGTCGACATGGACATGCTCAACCAGATACTCAGCATCAATA
ACGGTGGCGCCTACGGGGGCGGCAAGGCTGGCGGCGCCTTCGACCCCCTC
ACGTTCGCCATGAAGCCCCAAGTAGTCATCAGGGCCTTGTGCTGGCTCTT
CTCGGTGGTGGTCTTTGGCTGCATATCCTCGGAGGGTTGGACGGAGAAGG
ATGGCAAGGAGTACTGCCTCTATAATGGCGACGGCATGGCCTGCAAGTAT
GGCAACATGGTGGGCGTCTTCGGGTTCCTGGCCTCCATGGGTTTCATGGG
TGGCGAGTTCCTGTTCGAACGGATGTCGTCGGTGAAGAGCAGAAAGCGTT
ATGTCATGGCCGACATGGGTTTCTCGGCCCTCTGGACATTCATGTACTTC
GTGGCCTTCTTGTACTTGTGGTCGCAATGGAGCTCATCCGCCCCACCGCC
GCTGGGAATCGGAGCTGGCAGCATGAAGACCGCCATTTGGTTCTGCCTCT
TCTCGATTGTCAGCTGGGCTCTGTGCGCCCTGATGGCTTACAAGCGTTTC
CTGATCGGCGCCGGCGATGAGTTCACCTCTGCCTTCGAAACGGATCCCGC
CAACGTGGTCCACCAGCAGGCCTACGGCTACTCCATGGACAACGACAACG
ACCAGTACAGCGCCTCACCATTTGGCCAGCCCCAGCAGGGAGGCATGGAG
CAGCAACAATCCGGAATGGAGTACCAGCAGCCCACCTATTAAAAGCTTTC
TAGACCAT

BS13896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-RA 726 CG10808-PA 1..726 17..742 3615 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-RA 2710 CG10808-RA 461..1187 16..742 3620 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13843985..13844217 377..145 1165 100 Minus
2R 25286936 2R 13843539..13843712 690..517 870 100 Minus
2R 25286936 2R 13843773..13843914 518..377 710 100 Minus
2R 25286936 2R 13845666..13845795 145..16 650 100 Minus
2R 25286936 2R 13843284..13843334 742..692 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:34:08 has no hits.

BS13896.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:20 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 459..1182 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:00 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 462..1185 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:37 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
synaptogyrin-RA 459..1182 17..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:49 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 462..1185 17..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:49 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13843286..13843336 690..740 98 <- Minus
2R 13843540..13843711 518..689 100 <- Minus
2R 13843774..13843913 378..517 100 <- Minus
2R 13843985..13844216 146..377 100 <- Minus
2R 13845666..13845794 17..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:00 Download gff for BS13896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9730791..9730841 690..740 98 <- Minus
arm_2R 9731045..9731216 518..689 100 <- Minus
arm_2R 9731279..9731418 378..517 100 <- Minus
arm_2R 9731490..9731721 146..377 100 <- Minus
arm_2R 9733171..9733299 17..145 100   Minus

BS13896.3prime Sequence

171 bp (125 high quality bases) assembled on 2006-10-13

> BS13896.3prime
ATGGTCTAGAAAGCTTTTAATAGGTGGGCTGCTGGTACTCCATTCCGGAT
TGTTGCTGCTCCATGCCTCCCTGCTGGGGCTGGCCAAATGGTGAGGCGCT
GTACTGGTCGTTGTCGTTGTCCATGGAGTAGCCGTAGGCCTGCTGGTGGA
ACACGTTGGCGGGATCCGTTT

BS13896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10808-PA 726 synaptogyrin-RA 572..726 171..17 725 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-RA 2710 CG10808-RA 1033..1187 171..17 745 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13843539..13843641 69..171 500 99 Plus
2R 25286936 2R 13843284..13843334 17..67 255 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:54:32 has no hits.

BS13896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:26 Download gff for BS13896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10808-PA 572..726 17..171 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:40:56 Download gff for BS13896.3prime
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 1033..1193 10..171 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:24 Download gff for BS13896.3prime
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 1033..1193 10..171 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:24 Download gff for BS13896.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13843278..13843336 10..69 91 <- Plus
2R 13843540..13843641 70..171 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:40:56 Download gff for BS13896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9730783..9730841 10..69 91 <- Plus
arm_2R 9731045..9731146 70..171 99   Plus

BS13896.5prime Sequence

659 bp (580 high quality bases) assembled on 2006-10-13

> BS13896.5prime
GAAGTTATCAGTCGACATGGACATGCTCAACCAGATACTCAGCATCAATA
ACGGTGGCGCCTACGGGGGCGGCAAGGCTGGCGGCGCCTTCGACCCCCTC
ACGTTCGCCATGAAGCCCCAAGTAGTCATCAGGGCCTTGTGCTGGCTCTT
CTCGGTGGTGGTCTTTGGCTGCATATCCTCGGAGGGTTGGACGGAGAAGG
ATGGCAAGGAGTACTGCCTCTATAATGGCGACGGCATGGCCTGCAAGTAT
GGCAACATGGTGGGCGTCTTCGGGTTCCTGGCCTCCATGGGTTTCATGGG
TGGCGAGTTCCTGTTCGAACGGATGTCGTCGGTGAAGAGCAGAAAGCGTT
ATGTCATGGCCGACATGGGTTTCTCGGCCCTCTGGACATTCATGTACTTC
GTGGCCTTCTTGTACTTGTGGTCGCAATGGAGCTCATCCGCCCCACCGCC
GCTGGGAATCGGAGCTGGCAGCATGAAGACCGCCATTTGGTTCTGCCTCT
TCTCGATTGTCAGCTGGGCTCTGTGCGCCCTGATGGCTTACAAGCGTTTC
CTGATCGGCGCCGGCGATGAGTTCACCTCTGCCTTCGAAACGGATCCCCG
CCACGTGGTCCACCAGCAAGCCTACGGCTACTCCATGGACAACGACAACA
ACCAGAACA

BS13896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10808-PA 726 synaptogyrin-RA 1..639 17..655 3070 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-RA 2710 CG10808-RA 461..1104 16..659 3130 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13843985..13844217 377..145 1165 100 Minus
2R 25286936 2R 13843773..13843914 518..377 710 100 Minus
2R 25286936 2R 13845666..13845795 145..16 650 100 Minus
2R 25286936 2R 13843570..13843712 659..517 625 95.8 Minus
Blast to na_te.dros performed on 2015-02-13 07:03:16 has no hits.

BS13896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:26 Download gff for BS13896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10808-PA 1..642 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:29 Download gff for BS13896.5prime
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 453..1103 7..658 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:15 Download gff for BS13896.5prime
Subject Subject Range Query Range Percent Splice Strand
Syngr-RA 453..1103 7..658 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:15 Download gff for BS13896.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13843571..13843711 518..658 96 <- Minus
2R 13843774..13843913 378..517 100 <- Minus
2R 13843985..13844216 146..377 100 <- Minus
2R 13845666..13845803 7..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:29 Download gff for BS13896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9731279..9731418 378..517 100 <- Minus
arm_2R 9731076..9731216 518..658 96 <- Minus
arm_2R 9731490..9731721 146..377 100 <- Minus
arm_2R 9733171..9733308 7..145 97   Minus

BS13896.pep Sequence

Translation from 16 to 741

> BS13896.pep
MDMLNQILSINNGGAYGGGKAGGAFDPLTFAMKPQVVIRALCWLFSVVVF
GCISSEGWTEKDGKEYCLYNGDGMACKYGNMVGVFGFLASMGFMGGEFLF
ERMSSVKSRKRYVMADMGFSALWTFMYFVAFLYLWSQWSSSAPPPLGIGA
GSMKTAIWFCLFSIVSWALCALMAYKRFLIGAGDEFTSAFETDPANVVHQ
QAYGYSMDNDNDQYSASPFGQPQQGGMEQQQSGMEYQQPTY*

BS13896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Syngr-PA 241 CG10808-PA 1..241 1..241 1305 100 Plus