Clone BS13902 Report

Search the DGRC for BS13902

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG11211-RA
Protein status:BS13902.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13902.3prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS13902.3prime
ATGGTCTAGAAAGCTTTTATATATATACTCTCTTGTCCAGCCCTGAATAA
TTTAGCTGACAAACATTTTCGCAAATAAAATTGTGTTTCCGTTGGCAAGG
TTCACTATGCCAGAGATTGTCTGTTCCCAAGACCAGGCAGGCGTCTTGAC
CTGTTCGATCAGACTTGGGCTCTCTCCGGCTCCATTGTGCGTAGGTAACG
GGAATGCCAGTGCTCATCCAGGTCCAGAAATAGCTCCGATCCACCAGGTT
TGTGGCGCCCAACCAAAAGGTTCTGTTTCCAAATATCCGTTCTTTCCTGT
TGACGTAGTGAAGCATTAGCTGATGCTGCTCCTCATTTCTGACAGTAGCT
AGGACTGCTCCAACTCTATTGCATACATGGTTAGCTTCAAGCCAGTTTAC
TTCAGCAAAACCTGCCACTGAAAAATATGCATTGCACTGAAGAAGCGGAT
TGCACTTTTGATAAAAAGTCAAATCGGTATTGTTGATGTTGCTGGATGCT
ATTACCAAGAAAGGTAAGCTAAAGATAGTGAACAGTATGGTAACCATGTC
GACTGATAACT

BS13902.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 531 CG11211-RA 1..531 547..17 2630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..540 548..15 2655 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180979..6181257 15..293 1380 99.6 Plus
2R 25286936 2R 6181469..6181620 397..548 760 100 Plus
2R 25286936 2R 6181307..6181415 292..400 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:10:51 has no hits.

BS13902.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:26 Download gff for BS13902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 17..547 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:21 Download gff for BS13902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 7..554 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:00 Download gff for BS13902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 7..554 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:00 Download gff for BS13902.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6180973..6181255 7..291 98 <- Plus
2R 6181307..6181415 292..400 100 <- Plus
2R 6181473..6181620 401..548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:21 Download gff for BS13902.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068478..2068760 7..291 98 <- Plus
arm_2R 2068812..2068920 292..400 100 <- Plus
arm_2R 2068978..2069125 401..548 100   Plus

BS13902.5prime Sequence

561 bp (561 high quality bases) assembled on 2006-10-13

> BS13902.5prime
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATATAAAAG
CTTTCTAGACC

BS13902.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 531 CG11211-RA 1..531 17..547 2630 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..540 16..549 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180979..6181257 549..271 1380 99.6 Minus
2R 25286936 2R 6181469..6181620 167..16 760 100 Minus
2R 25286936 2R 6181307..6181415 272..164 545 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:09:14 has no hits.

BS13902.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:27 Download gff for BS13902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:38 Download gff for BS13902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 10..557 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:51 Download gff for BS13902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 10..557 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:51 Download gff for BS13902.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6180973..6181255 273..557 98 <- Minus
2R 6181307..6181415 164..272 100 <- Minus
2R 6181473..6181620 16..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:38 Download gff for BS13902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068978..2069125 16..163 100   Minus
arm_2R 2068478..2068760 273..557 98 <- Minus
arm_2R 2068812..2068920 164..272 100 <- Minus

BS13902.complete Sequence

563 bp assembled on 2006-11-01

GenBank Submission: FJ637547

> BS13902.complete
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATATAAAAG
CTTTCTAGACCAT

BS13902.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 531 CG11211-PA 1..531 17..547 2640 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..540 16..549 2655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180979..6181257 549..271 1380 99.6 Minus
2R 25286936 2R 6181469..6181620 167..16 760 100 Minus
2R 25286936 2R 6181307..6181415 272..164 545 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:47:56 has no hits.

BS13902.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:56 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:18 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 10..557 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:48 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 8..536 17..545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:56 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..546 10..557 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:57 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 8..536 17..545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:57 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6180983..6181255 273..545 99 <- Minus
2R 6181307..6181415 164..272 100 <- Minus
2R 6181473..6181619 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:48 Download gff for BS13902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068488..2068760 273..545 99 <- Minus
arm_2R 2068812..2068920 164..272 100 <- Minus
arm_2R 2068978..2069124 17..163 100   Minus

BS13902.pep Sequence

Translation from 16 to 546

> BS13902.pep
MVTILFTIFSLPFLVIASSNINNTDLTFYQKCNPLLQCNAYFSVAGFAEV
NWLEANHVCNRVGAVLATVRNEEQHQLMLHYVNRKERIFGNRTFWLGATN
LVDRSYFWTWMSTGIPVTYAQWSRREPKSDRTGQDACLVLGTDNLWHSEP
CQRKHNFICENVCQLNYSGLDKRVYI*

BS13902.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 176 CG11211-PA 1..176 1..176 964 100 Plus
CG9134-PC 188 CG9134-PC 67..184 47..160 167 28.9 Plus
CG9134-PA 188 CG9134-PA 67..184 47..160 167 28.9 Plus
CG9134-PB 376 CG9134-PB 255..372 47..160 167 28.9 Plus
lectin-21Cb-PB 249 CG13686-PB 116..249 20..162 158 31 Plus