Clone Sequence Records
BS13902.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS13902.3prime
ATGGTCTAGAAAGCTTTTATATATATACTCTCTTGTCCAGCCCTGAATAA
TTTAGCTGACAAACATTTTCGCAAATAAAATTGTGTTTCCGTTGGCAAGG
TTCACTATGCCAGAGATTGTCTGTTCCCAAGACCAGGCAGGCGTCTTGAC
CTGTTCGATCAGACTTGGGCTCTCTCCGGCTCCATTGTGCGTAGGTAACG
GGAATGCCAGTGCTCATCCAGGTCCAGAAATAGCTCCGATCCACCAGGTT
TGTGGCGCCCAACCAAAAGGTTCTGTTTCCAAATATCCGTTCTTTCCTGT
TGACGTAGTGAAGCATTAGCTGATGCTGCTCCTCATTTCTGACAGTAGCT
AGGACTGCTCCAACTCTATTGCATACATGGTTAGCTTCAAGCCAGTTTAC
TTCAGCAAAACCTGCCACTGAAAAATATGCATTGCACTGAAGAAGCGGAT
TGCACTTTTGATAAAAAGTCAAATCGGTATTGTTGATGTTGCTGGATGCT
ATTACCAAGAAAGGTAAGCTAAAGATAGTGAACAGTATGGTAACCATGTC
GACTGATAACT
BS13902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 531 | CG11211-RA | 1..531 | 547..17 | 2630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..540 | 548..15 | 2655 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180979..6181257 | 15..293 | 1380 | 99.6 | Plus |
2R | 25286936 | 2R | 6181469..6181620 | 397..548 | 760 | 100 | Plus |
2R | 25286936 | 2R | 6181307..6181415 | 292..400 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:51 has no hits.
BS13902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:26 Download gff for
BS13902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 17..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:21 Download gff for
BS13902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 7..554 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:00 Download gff for
BS13902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 7..554 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:00 Download gff for
BS13902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6180973..6181255 | 7..291 | 98 | <- | Plus |
2R | 6181307..6181415 | 292..400 | 100 | <- | Plus |
2R | 6181473..6181620 | 401..548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:21 Download gff for
BS13902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068478..2068760 | 7..291 | 98 | <- | Plus |
arm_2R | 2068812..2068920 | 292..400 | 100 | <- | Plus |
arm_2R | 2068978..2069125 | 401..548 | 100 | | Plus |
BS13902.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-10-13
> BS13902.5prime
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATATAAAAG
CTTTCTAGACC
BS13902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 531 | CG11211-RA | 1..531 | 17..547 | 2630 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..540 | 16..549 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180979..6181257 | 549..271 | 1380 | 99.6 | Minus |
2R | 25286936 | 2R | 6181469..6181620 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 6181307..6181415 | 272..164 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:09:14 has no hits.
BS13902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:27 Download gff for
BS13902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:38 Download gff for
BS13902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 10..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:51 Download gff for
BS13902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 10..557 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:51 Download gff for
BS13902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6180973..6181255 | 273..557 | 98 | <- | Minus |
2R | 6181307..6181415 | 164..272 | 100 | <- | Minus |
2R | 6181473..6181620 | 16..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:38 Download gff for
BS13902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068978..2069125 | 16..163 | 100 | | Minus |
arm_2R | 2068478..2068760 | 273..557 | 98 | <- | Minus |
arm_2R | 2068812..2068920 | 164..272 | 100 | <- | Minus |
BS13902.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ637547
> BS13902.complete
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATATAAAAG
CTTTCTAGACCAT
BS13902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 531 | CG11211-PA | 1..531 | 17..547 | 2640 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..540 | 16..549 | 2655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180979..6181257 | 549..271 | 1380 | 99.6 | Minus |
2R | 25286936 | 2R | 6181469..6181620 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 6181307..6181415 | 272..164 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:56 has no hits.
BS13902.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:56 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:18 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 10..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:48 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 8..536 | 17..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:56 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..546 | 10..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:57 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 8..536 | 17..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:57 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6180983..6181255 | 273..545 | 99 | <- | Minus |
2R | 6181307..6181415 | 164..272 | 100 | <- | Minus |
2R | 6181473..6181619 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:48 Download gff for
BS13902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068488..2068760 | 273..545 | 99 | <- | Minus |
arm_2R | 2068812..2068920 | 164..272 | 100 | <- | Minus |
arm_2R | 2068978..2069124 | 17..163 | 100 | | Minus |
BS13902.pep Sequence
Translation from 16 to 546
> BS13902.pep
MVTILFTIFSLPFLVIASSNINNTDLTFYQKCNPLLQCNAYFSVAGFAEV
NWLEANHVCNRVGAVLATVRNEEQHQLMLHYVNRKERIFGNRTFWLGATN
LVDRSYFWTWMSTGIPVTYAQWSRREPKSDRTGQDACLVLGTDNLWHSEP
CQRKHNFICENVCQLNYSGLDKRVYI*
BS13902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 176 | CG11211-PA | 1..176 | 1..176 | 964 | 100 | Plus |
CG9134-PC | 188 | CG9134-PC | 67..184 | 47..160 | 167 | 28.9 | Plus |
CG9134-PA | 188 | CG9134-PA | 67..184 | 47..160 | 167 | 28.9 | Plus |
CG9134-PB | 376 | CG9134-PB | 255..372 | 47..160 | 167 | 28.9 | Plus |
lectin-21Cb-PB | 249 | CG13686-PB | 116..249 | 20..162 | 158 | 31 | Plus |