Clone BS13903 Report

Search the DGRC for BS13903

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptGstE14-RA
Protein status:BS13903.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13903.3prime Sequence

684 bp (595 high quality bases) assembled on 2006-10-13

> BS13903.3prime
ATGGTCTAGAAAGCTTCTACTCCACCTTCTCGGTGACTACCGCTGATGAC
GATGGGAACTGAAAGCTACCGACGCTCTCCATCGTTTGGCGGAGCTTCTC
CAAGCCACTGCAGTTGGCCTCGTAGGCATCCAGCTGCTGCATCGCGGTGA
ACCAGCGCCGCAGACGTGGGAACTGCGACAGGGGAAACATGAGATTGACG
GTGCTCAATGTGGTCACGATGGATAAGTCGGCGAGCGTCAGCTGTGGCCC
GGCCATAAAATCGCTATTTTCCAGGTAACGCTCCATGATAATATACGCCT
CGGTCAGCTTGCGTTCATGATGTGCCACATCGACATTGGCGAATCCCTGG
CGGACAGTCGCCGACATAAAATCACTGTCACGTCGGAACAAAAAGGAGCA
CTCGAAGAGCAGGAGGTTCAGAACCTTCATCCGTTCTGCGTGCTCCTGCG
GCCACAAACTACCGCCCTCATCGAACTTCTCCGCCAGGTGAATGAGTATA
GCATGACTGTCCGTCAGCACCAGATCACCGTGGACTAGGGTGGGAACACT
GTGCTGGGGATTTAACGCTAAGAAATCTTTTTGGAATTGCTCGCCCTTGA
AGAGATTCACAAACCTGAGCTCCACATCTATATCGAGCAATTTGATTAGC
ATAAGGCAACTGCGGACCGGCGGACTGCGCTCGT

BS13903.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4688-PA 699 CG4688-RA 32..699 684..17 3340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 91..758 684..17 3340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240763 244..17 1140 100 Minus
2R 25286936 2R 13240064..13240265 566..365 1010 100 Minus
2R 25286936 2R 13240323..13240446 365..242 620 100 Minus
2R 25286936 2R 13239819..13239941 684..562 600 99.2 Minus
Blast to na_te.dros performed on 2015-02-02 18:10:18 has no hits.

BS13903.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:27 Download gff for BS13903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 32..699 17..684 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:40 Download gff for BS13903.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 91..762 12..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:56 Download gff for BS13903.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 91..762 12..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:56 Download gff for BS13903.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13239819..13239937 566..684 100 -> Minus
2R 13240065..13240265 365..565 100 -> Minus
2R 13240324..13240446 242..364 100 -> Minus
2R 13240539..13240767 12..241 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:40 Download gff for BS13903.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127324..9127442 566..684 100 -> Minus
arm_2R 9127570..9127770 365..565 100 -> Minus
arm_2R 9127829..9127951 242..364 100 -> Minus
arm_2R 9128044..9128272 12..241 99   Minus

BS13903.5prime Sequence

666 bp (608 high quality bases) assembled on 2006-10-13

> BS13903.5prime
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGGCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAG

BS13903.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4688-PA 699 CG4688-RA 1..650 17..666 3225 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..709 17..666 3235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240064..13240265 166..367 1010 100 Plus
2R 25286936 2R 13240536..13240714 488..666 880 99.4 Plus
2R 25286936 2R 13239788..13239941 17..170 755 99.4 Plus
2R 25286936 2R 13240323..13240446 367..490 620 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:04:17 has no hits.

BS13903.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:28 Download gff for BS13903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 1..650 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:01 Download gff for BS13903.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..709 17..666 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:39 Download gff for BS13903.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..709 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:39 Download gff for BS13903.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13239788..13239937 17..166 100 -> Plus
2R 13240065..13240265 167..367 100 -> Plus
2R 13240324..13240446 368..490 100 -> Plus
2R 13240539..13240714 491..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:01 Download gff for BS13903.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127293..9127442 17..166 100 -> Plus
arm_2R 9127570..9127770 167..367 100 -> Plus
arm_2R 9127829..9127951 368..490 100 -> Plus
arm_2R 9128044..9128219 491..666 99   Plus

BS13903.complete Sequence

731 bp assembled on 2006-11-01

GenBank Submission: FJ637548

> BS13903.complete
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGTAGAAGCTTTCTAGACCAT

BS13903.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 699 CG4688-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..758 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240763 488..715 1140 100 Plus
2R 25286936 2R 13240064..13240265 166..367 1010 100 Plus
2R 25286936 2R 13239788..13239941 17..170 755 99.4 Plus
2R 25286936 2R 13240323..13240446 367..490 620 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:45:50 has no hits.

BS13903.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:45 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:07 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 61..763 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:10 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..758 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:45 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 61..763 17..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:57 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..758 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:57 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13239788..13239937 17..166 100 -> Plus
2R 13240065..13240265 167..367 100 -> Plus
2R 13240324..13240446 368..490 100 -> Plus
2R 13240539..13240763 491..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:10 Download gff for BS13903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127829..9127951 368..490 100 -> Plus
arm_2R 9128044..9128268 491..715 100   Plus
arm_2R 9127293..9127442 17..166 100 -> Plus
arm_2R 9127570..9127770 167..367 100 -> Plus

BS13903.pep Sequence

Translation from 16 to 714

> BS13903.pep
MSQPKPILYYDERSPPVRSCLMLIKLLDIDVELRFVNLFKGEQFQKDFLA
LNPQHSVPTLVHGDLVLTDSHAILIHLAEKFDEGGSLWPQEHAERMKVLN
LLLFECSFLFRRDSDFMSATVRQGFANVDVAHHERKLTEAYIIMERYLEN
SDFMAGPQLTLADLSIVTTLSTVNLMFPLSQFPRLRRWFTAMQQLDAYEA
NCSGLEKLRQTMESVGSFQFPSSSAVVTEKVE*

BS13903.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-PA 232 CG4688-PA 1..232 1..232 1192 100 Plus
GstE4-PA 222 CG17525-PA 6..215 8..214 331 34.8 Plus
GstE12-PC 223 CG16936-PC 3..215 5..214 314 34.3 Plus
GstE12-PB 223 CG16936-PB 3..215 5..214 314 34.3 Plus
GstE12-PD 223 CG16936-PD 3..215 5..214 314 34.3 Plus