Clone Sequence Records
BS13903.3prime Sequence
684 bp (595 high quality bases) assembled on 2006-10-13
> BS13903.3prime
ATGGTCTAGAAAGCTTCTACTCCACCTTCTCGGTGACTACCGCTGATGAC
GATGGGAACTGAAAGCTACCGACGCTCTCCATCGTTTGGCGGAGCTTCTC
CAAGCCACTGCAGTTGGCCTCGTAGGCATCCAGCTGCTGCATCGCGGTGA
ACCAGCGCCGCAGACGTGGGAACTGCGACAGGGGAAACATGAGATTGACG
GTGCTCAATGTGGTCACGATGGATAAGTCGGCGAGCGTCAGCTGTGGCCC
GGCCATAAAATCGCTATTTTCCAGGTAACGCTCCATGATAATATACGCCT
CGGTCAGCTTGCGTTCATGATGTGCCACATCGACATTGGCGAATCCCTGG
CGGACAGTCGCCGACATAAAATCACTGTCACGTCGGAACAAAAAGGAGCA
CTCGAAGAGCAGGAGGTTCAGAACCTTCATCCGTTCTGCGTGCTCCTGCG
GCCACAAACTACCGCCCTCATCGAACTTCTCCGCCAGGTGAATGAGTATA
GCATGACTGTCCGTCAGCACCAGATCACCGTGGACTAGGGTGGGAACACT
GTGCTGGGGATTTAACGCTAAGAAATCTTTTTGGAATTGCTCGCCCTTGA
AGAGATTCACAAACCTGAGCTCCACATCTATATCGAGCAATTTGATTAGC
ATAAGGCAACTGCGGACCGGCGGACTGCGCTCGT
BS13903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4688-PA | 699 | CG4688-RA | 32..699 | 684..17 | 3340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 91..758 | 684..17 | 3340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240536..13240763 | 244..17 | 1140 | 100 | Minus |
2R | 25286936 | 2R | 13240064..13240265 | 566..365 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 13240323..13240446 | 365..242 | 620 | 100 | Minus |
2R | 25286936 | 2R | 13239819..13239941 | 684..562 | 600 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:10:18 has no hits.
BS13903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:27 Download gff for
BS13903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 32..699 | 17..684 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:40 Download gff for
BS13903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 91..762 | 12..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:56 Download gff for
BS13903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 91..762 | 12..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:56 Download gff for
BS13903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13239819..13239937 | 566..684 | 100 | -> | Minus |
2R | 13240065..13240265 | 365..565 | 100 | -> | Minus |
2R | 13240324..13240446 | 242..364 | 100 | -> | Minus |
2R | 13240539..13240767 | 12..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:40 Download gff for
BS13903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127324..9127442 | 566..684 | 100 | -> | Minus |
arm_2R | 9127570..9127770 | 365..565 | 100 | -> | Minus |
arm_2R | 9127829..9127951 | 242..364 | 100 | -> | Minus |
arm_2R | 9128044..9128272 | 12..241 | 99 | | Minus |
BS13903.5prime Sequence
666 bp (608 high quality bases) assembled on 2006-10-13
> BS13903.5prime
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGGCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAG
BS13903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4688-PA | 699 | CG4688-RA | 1..650 | 17..666 | 3225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 60..709 | 17..666 | 3235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240064..13240265 | 166..367 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 13240536..13240714 | 488..666 | 880 | 99.4 | Plus |
2R | 25286936 | 2R | 13239788..13239941 | 17..170 | 755 | 99.4 | Plus |
2R | 25286936 | 2R | 13240323..13240446 | 367..490 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:04:17 has no hits.
BS13903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:28 Download gff for
BS13903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 1..650 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:01 Download gff for
BS13903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..709 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:39 Download gff for
BS13903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..709 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:39 Download gff for
BS13903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13239788..13239937 | 17..166 | 100 | -> | Plus |
2R | 13240065..13240265 | 167..367 | 100 | -> | Plus |
2R | 13240324..13240446 | 368..490 | 100 | -> | Plus |
2R | 13240539..13240714 | 491..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:01 Download gff for
BS13903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127293..9127442 | 17..166 | 100 | -> | Plus |
arm_2R | 9127570..9127770 | 167..367 | 100 | -> | Plus |
arm_2R | 9127829..9127951 | 368..490 | 100 | -> | Plus |
arm_2R | 9128044..9128219 | 491..666 | 99 | | Plus |
BS13903.complete Sequence
731 bp assembled on 2006-11-01
GenBank Submission: FJ637548
> BS13903.complete
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGTAGAAGCTTTCTAGACCAT
BS13903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 699 | CG4688-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 60..758 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240536..13240763 | 488..715 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 13240064..13240265 | 166..367 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 13239788..13239941 | 17..170 | 755 | 99.4 | Plus |
2R | 25286936 | 2R | 13240323..13240446 | 367..490 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:45:50 has no hits.
BS13903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:45 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:07 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 61..763 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:10 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..758 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:45 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 61..763 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:57 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..758 | 17..715 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:57 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13239788..13239937 | 17..166 | 100 | -> | Plus |
2R | 13240065..13240265 | 167..367 | 100 | -> | Plus |
2R | 13240324..13240446 | 368..490 | 100 | -> | Plus |
2R | 13240539..13240763 | 491..715 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:10 Download gff for
BS13903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127829..9127951 | 368..490 | 100 | -> | Plus |
arm_2R | 9128044..9128268 | 491..715 | 100 | | Plus |
arm_2R | 9127293..9127442 | 17..166 | 100 | -> | Plus |
arm_2R | 9127570..9127770 | 167..367 | 100 | -> | Plus |
BS13903.pep Sequence
Translation from 16 to 714
> BS13903.pep
MSQPKPILYYDERSPPVRSCLMLIKLLDIDVELRFVNLFKGEQFQKDFLA
LNPQHSVPTLVHGDLVLTDSHAILIHLAEKFDEGGSLWPQEHAERMKVLN
LLLFECSFLFRRDSDFMSATVRQGFANVDVAHHERKLTEAYIIMERYLEN
SDFMAGPQLTLADLSIVTTLSTVNLMFPLSQFPRLRRWFTAMQQLDAYEA
NCSGLEKLRQTMESVGSFQFPSSSAVVTEKVE*
BS13903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-PA | 232 | CG4688-PA | 1..232 | 1..232 | 1192 | 100 | Plus |
GstE4-PA | 222 | CG17525-PA | 6..215 | 8..214 | 331 | 34.8 | Plus |
GstE12-PC | 223 | CG16936-PC | 3..215 | 5..214 | 314 | 34.3 | Plus |
GstE12-PB | 223 | CG16936-PB | 3..215 | 5..214 | 314 | 34.3 | Plus |
GstE12-PD | 223 | CG16936-PD | 3..215 | 5..214 | 314 | 34.3 | Plus |