Clone Sequence Records
BS13905.3prime Sequence
546 bp (433 high quality bases) assembled on 2006-10-13
> BS13905.3prime
ATGGTCTAGAAAGCTTCTACAGCGAGGATCTGGCCAAGCGGCGTCGCTGC
GCAGCCAGCGGAGTGCCCTCCTCGCGCAATTCGGCCAAGAGGGAGTCCTG
CCAGGGACGAAACAGGAGGCGCTTTGTCGCCAACAGGGAGGCGGAAGGCA
AGCGCAAGTATTGGTCGACGCGGTGCCAAAACTCCTGCGGCTCTCGCACC
ACACTGGCCACAAGGCCACACTGGAGGGCAATGCTGGAGCTCGCTTGATC
GCCCAGACGAAGCAGCCAGTGGACGTGTGGCACAGTCCAGCCGGGACCCA
CCTTGGTGCAGGGATCCAGGTGCGAGAAAGCGGGCACAAAGGCAGATAAC
TCCGTTGCGAAGACCAGATCGCACAGGCTGCACACGCTCAGGCCCAGACC
GACGCACTGCCTCTCCACAAAAGCCACTAGGAGTTTGCGGTGCACAAGCA
GCTTCTTGGCCAGCGAGCGCATCACAAAATTGGCCGCCTTCTCATGGATG
TACTGCTCCTCGGCATCACCACTGCCCACAGCTTCTTCGTGGGAAG
BS13905.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-PA | 783 | CG14787-RA | 254..783 | 546..17 | 2650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-RA | 870 | CG14787-RA | 285..814 | 546..17 | 2650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1460863..1461392 | 17..546 | 2650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:21:35 has no hits.
BS13905.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:28 Download gff for
BS13905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-PA | 254..783 | 17..546 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:05 Download gff for
BS13905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 285..818 | 11..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:13 Download gff for
BS13905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 285..818 | 11..546 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:13 Download gff for
BS13905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1460859..1461392 | 11..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:05 Download gff for
BS13905.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1354892..1355425 | 11..546 | 99 | | Plus |
BS13905.5prime Sequence
594 bp (507 high quality bases) assembled on 2006-10-13
> BS13905.5prime
GAAGTTATCAGTCGACATGGCCACAAACGAGAGCTGCAAGCACTTCAGGG
AGCTGGTCGTCGAACAGCGTTCTGGGCTGCTCCACATACGCTTCCAGCGG
CGCTGGCAACGCCGAACCCTCTACGAGCTGATGCGCGCCCTGGACCTGGC
GAGTGCAGACGCCGCCGTTAAGGTGGTCGTGCTCTCGGGCGAGTTTTCTG
CAGCATGTGGCGGTGAGATGGAACCGTTGGCTCTCAAACAGGGTCTGGAG
AATAGGAGTAGGCGTACCGCTTCCCACGAAGAAGCTGTGGGCAGTGGTGA
TGCCGAGGAGCAGTACATCCATGAGAAGGCGGCCAATTTTGTGATGCGCT
CGCTGGCCAAGAAGCTGCTTGTGCACCGCAAACTCCTAGTGGCTTTTGTG
GAGAGGCAGTGCGTCGGTCTGGGCCTGAGCGTGTGCAGCCTGTGCGATCT
GGTCTTCGCAACGGAGTTATCTGCCTTTGTGCCCGCTTTCTCGCACCTGG
ATCCCTGCACCAAGGTGGGTCCCGGCTGGACTGTGCCACACGTCCACTGG
CTGCTTCGTCGGGGCGATCAAGCGAACTCCAGCATTGCCCTCCA
BS13905.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-PA | 783 | CG14787-RA | 1..578 | 17..594 | 2840 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-RA | 870 | CG14787-RA | 32..609 | 17..594 | 2860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1461068..1461645 | 594..17 | 2860 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:38 has no hits.
BS13905.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:28 Download gff for
BS13905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-PA | 1..577 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:27 Download gff for
BS13905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 21..608 | 3..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:05 Download gff for
BS13905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 21..608 | 3..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:05 Download gff for
BS13905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1461069..1461656 | 3..593 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:27 Download gff for
BS13905.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1355102..1355689 | 3..593 | 98 | | Minus |
BS13905.complete Sequence
815 bp assembled on 2006-11-01
GenBank Submission: FJ637549
> BS13905.complete
GAAGTTATCAGTCGACATGGCCACAAACGAGAGCTGCAAGCACTTCAGGG
AGCTGGTCGTCGAACAGCGTTCTGGGCTGCTCCACATACGCTTCCAGCGG
CGCTGGCAACGCCGAACCCTCTACGAGCTGATGCGCGCCCTGGACCTGGC
GAGTGCAGACGCCGCCGTTAAGGTGGTCGTGCTCTCGGGCGAGTTTTCTG
CAGCATGTGGCGGTGAGATGGAACCGTTGGCTCTCAAACAGGGTCTGGAG
AATAGGAGTAGGCGTACCGCTTCCCACGAAGAAGCTGTGGGCAGTGGTGA
TGCCGAGGAGCAGTACATCCATGAGAAGGCGGCCAATTTTGTGATGCGCT
CGCTGGCCAAGAAGCTGCTTGTGCACCGCAAACTCCTAGTGGCTTTTGTG
GAGAGGCAGTGCGTCGGTCTGGGCCTGAGCGTGTGCAGCCTGTGCGATCT
GGTCTTCGCAACGGAGTTATCTGCCTTTGTGCCCGCTTTCTCGCACCTGG
ATCCCTGCACCAAGGTGGGTCCCGGCTGGACTGTGCCACACGTCCACTGG
CTGCTTCGTCTGGGCGATCAAGCGAGCTCCAGCATTGCCCTCCAGTGTGG
CCTTGTGGCCAGTGTGGTGCGAGAGCCGCAGGAGTTTTGGCACCGCGTCG
ACCAATACTTGCGCTTGCCTTCCGCCTCCCTGTTGGCGACAAAGCGCCTC
CTGTTTCGTCCCTGGCAGGACTCCCTCTTGGCCGAATTGCGCGAGGAGGG
CACTCCGCTGGCTGCGCAGCGACGCCGCTTGGCCAGATCCTCGCTGTAGA
AGCTTTCTAGACCAT
BS13905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-RA | 783 | CG14787-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-RA | 870 | CG14787-RA | 32..814 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1460863..1461645 | 799..17 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:24:29 has no hits.
BS13905.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:51 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:59:41 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 12..809 | 3..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:26 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 32..814 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:52 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 12..809 | 3..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:56 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14787-RA | 32..814 | 17..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:56 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1460863..1461645 | 17..799 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:26 Download gff for
BS13905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1354896..1355678 | 17..799 | 100 | | Minus |
BS13905.pep Sequence
Translation from 16 to 798
> BS13905.pep
MATNESCKHFRELVVEQRSGLLHIRFQRRWQRRTLYELMRALDLASADAA
VKVVVLSGEFSAACGGEMEPLALKQGLENRSRRTASHEEAVGSGDAEEQY
IHEKAANFVMRSLAKKLLVHRKLLVAFVERQCVGLGLSVCSLCDLVFATE
LSAFVPAFSHLDPCTKVGPGWTVPHVHWLLRLGDQASSSIALQCGLVASV
VREPQEFWHRVDQYLRLPSASLLATKRLLFRPWQDSLLAELREEGTPLAA
QRRRLARSSL*
BS13905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14787-PA | 260 | CG14787-PA | 1..260 | 1..260 | 1330 | 100 | Plus |
