Clone BS13907 Report

Search the DGRC for BS13907

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG32687-RA
Protein status:BS13907.pep: full length peptide match
Sequenced Size:1166

Clone Sequence Records

BS13907.3prime Sequence

594 bp (530 high quality bases) assembled on 2006-10-13

> BS13907.3prime
ATGGTCTAGAAAGCTTCTAGCCCAGCAGCACCTTGCGCATCATGAATCCG
CTGCTGGCGCTCGCCGCCGGAACGGATGATCCACGCGCCGCCGGCTGCTC
TGGCTCGATGCACTTGGAGGAGCAGAGGTACTGCAGCAATGGTACACGGT
ACTTTCCGCAAAAGTCCACGAACTTGATGTGCTCCACCCGGTTGTCGAAG
AAGACGCCCTTGCAGTTGGGATTCACGCAGCAATTGGCGCTGTTCAAATA
CTCGGCCAGTGTCCTGGGGATGTCATAGGGTCCGGGTCTCTGGCCACTGG
CCTTCACCATGCGACCAGCCAGCTCGAGGAGGGTGGGTGGCTTCAGCGCC
ATGTCCTGCACGAAGCGCACCACCAGCGGATTGTCACGTAGGCTCAGCTC
AGTCAGATTCTTCAGTGCCACGATGTCCTTGGGAAGATGACGCAGACGGT
TCTTGTGCAGCAGCAGCGACTTGAGGTTCTTCAGTCGGGCGATGCTGGTC
GGCAGAATCTCGATCAGATTGTCGCACAGGACGAGAGCCTGCAGCTGATT
AAGGGAACCCACCGCCTCGGGAACTTCGCTGATTAAATTGCCGC

BS13907.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-PA 1134 CG32687-RA 557..1134 594..17 2865 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 2803 CG32687-RB 1394..1971 594..17 2875 99.8 Minus
CG32687-RA 2352 CG32687-RA 943..1520 594..17 2875 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10482860..10483242 17..399 1915 100 Plus
X 23542271 X 10483342..10483538 398..594 970 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:01:09 has no hits.

BS13907.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:30 Download gff for BS13907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-PA 557..1134 17..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:55:32 Download gff for BS13907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 943..1529 9..594 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:58 Download gff for BS13907.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 943..1529 9..594 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:58 Download gff for BS13907.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10482851..10483240 9..397 98 <- Plus
X 10483342..10483538 398..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:55:32 Download gff for BS13907.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10376884..10377273 9..397 98 <- Plus
arm_X 10377375..10377571 398..594 99   Plus

BS13907.5prime Sequence

600 bp (502 high quality bases) assembled on 2006-10-13

> BS13907.5prime
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGGAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGGCGGCATCTAATCAGCGAATTCCCCGA

BS13907.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-PA 1134 CG32687-RA 1..576 17..592 2780 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 2803 CG32687-RB 837..1421 16..600 2835 99.1 Plus
CG32687-RA 2352 CG32687-RA 386..970 16..600 2835 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10485711..10486247 552..16 2670 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 15:40:47 has no hits.

BS13907.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:30 Download gff for BS13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-PA 1..583 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:20:44 Download gff for BS13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 376..969 1..599 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:07 Download gff for BS13907.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 376..969 1..599 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:07 Download gff for BS13907.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10483512..10483558 553..599 91 <- Minus
X 10485711..10486257 1..552 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:20:44 Download gff for BS13907.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10377545..10377591 553..599 91 <- Minus
arm_X 10379744..10380290 1..552 98   Minus

BS13907.complete Sequence

1166 bp assembled on 2010-05-13

GenBank Submission: KX800447

> BS13907.complete
GAAGTTATCAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGG
ATTCGCGGGAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTG
GTCACGCTGGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTC
CAGTGGCGACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCT
TGCCCCGTCTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGC
TCGAATGCAATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGT
CACCCTGATAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAAT
CGCTGCTCACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGT
GGCACCAACTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAAC
CCACTTTCCGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATC
TGGGCGGTAACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAA
AGTCTGCATGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGA
GGCGGTGGGTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATC
TGATCGAGATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCG
CTGCTGCTGCACAAGAACCGTCTGCGTCATCTTCCCAAGGACATCGTGGC
ACTGAAGAATCTGACTGAGCTGAGCCTACGTGACAATCCGCTGGTGGTGC
GCTTCGTGCAGGACATGGCGCTGAAGCCACCCACCCTCCTCGAGCTGGCT
GGTCGCATGGTGAAGGCCAGTGGCCAGAGACCCGGACCCTATGACATCCC
CAGGACACTGGCCGAGTATTTGAACAGCGCCAATTGCTGCGTGAATCCCA
ACTGCAAGGGCGTCTTCTTCGACAACCGGGTGGAGCACATCAAGTTCGTG
GACTTTTGCGGAAAGTACCGTGTACCATTGCTGCAGTACCTCTGCTCCTC
CAAGTGCATCGAGCCAGAGCAGCCGGCGGCGCGTGGATCATCCGTTCCGG
CGGCGAGCGCCAGCAGCGGATTCATGATGCGCAAGGTGCTGCTGGGCTAG
AAGCTTTCTAGACCAT

BS13907.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 1134 CG32687-PB 1..1134 17..1150 5670 100 Plus
CG32687-RA 1134 CG32687-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-RB 2803 CG32687-RB 837..1971 16..1150 5675 100 Plus
CG32687-RA 2352 CG32687-RA 386..1520 16..1150 5675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10485711..10486247 552..16 2685 100 Minus
X 23542271 X 10482860..10483242 1150..768 1915 100 Minus
X 23542271 X 10483342..10483560 769..551 1095 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:16:34 has no hits.

BS13907.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:10 Download gff for BS13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 382..1515 17..1150 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:21 Download gff for BS13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 387..1520 17..1150 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:40 Download gff for BS13907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32687-RA 387..1520 17..1150 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:40 Download gff for BS13907.complete
Subject Subject Range Query Range Percent Splice Strand
X 10483342..10483558 553..769 100 <- Minus
X 10482860..10483240 770..1150 100 <- Minus
X 10485711..10486246 17..552 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:21 Download gff for BS13907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10376893..10377273 770..1150 100 <- Minus
arm_X 10377375..10377591 553..769 100 <- Minus
arm_X 10379744..10380279 17..552 100   Minus

BS13907.pep Sequence

Translation from 16 to 1149

> BS13907.pep
MEVYTSDSSDTDSREQKTLDFGRMSLDLVTLEDHLASPQKALLKSSGDIE
TMLLNHNRLVGLPRLLLQFGNLKILDLSSNAITTLPDAVCQLPLVTLIAK
NNLLTNASLPKSLLTKMANGNGNGNATGGTNSTLKELNLSGNQLTHFPEQ
VTELRHLKYLYLGGNKISSVSKDIWKMQSLHVLSLGGNLISEVPEAVGSL
NQLQALVLCDNLIEILPTSIARLKNLKSLLLHKNRLRHLPKDIVALKNLT
ELSLRDNPLVVRFVQDMALKPPTLLELAGRMVKASGQRPGPYDIPRTLAE
YLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEP
EQPAARGSSVPAASASSGFMMRKVLLG*

BS13907.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32687-PB 377 CG32687-PB 1..377 1..377 1918 100 Plus
CG32687-PA 377 CG32687-PA 1..377 1..377 1918 100 Plus
Lap1-PB 849 CG10255-PB 93..306 54..260 244 30.6 Plus
Lap1-PA 849 CG10255-PA 93..306 54..260 244 30.6 Plus
Sur-8-PF 641 CG5407-PF 386..599 42..269 242 30.3 Plus
Lap1-PB 849 CG10255-PB 225..400 48..239 206 30.6 Plus
Lap1-PA 849 CG10255-PA 225..400 48..239 206 30.6 Plus
Lap1-PB 849 CG10255-PB 156..401 48..260 192 26.4 Plus
Lap1-PA 849 CG10255-PA 156..401 48..260 192 26.4 Plus
Lap1-PB 849 CG10255-PB 65..188 134..257 190 37.1 Plus
Lap1-PA 849 CG10255-PA 65..188 134..257 190 37.1 Plus
Lap1-PB 849 CG10255-PB 19..144 134..259 183 37.3 Plus
Lap1-PA 849 CG10255-PA 19..144 134..259 183 37.3 Plus
Lap1-PB 849 CG10255-PB 41..168 133..260 175 36.7 Plus
Lap1-PA 849 CG10255-PA 41..168 133..260 175 36.7 Plus
Lap1-PB 849 CG10255-PB 42..213 49..259 159 25.6 Plus
Lap1-PA 849 CG10255-PA 42..213 49..259 159 25.6 Plus