Clone BS13910 Report

Search the DGRC for BS13910

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS13910.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS13910.3prime Sequence

495 bp (495 high quality bases) assembled on 2006-10-13

> BS13910.3prime
ATGGTCTAGAAAGCTTCTACGGCATGCCGCCCAGTCGCTTGTAGTCGATC
TTCTCGAGCTGCACGAGTGGCTTTAGTTGCTCGGCAAACACGCGCATTTC
CTCGCCGACATTCTCCTGCCCCGTTGGCGCCACCACAGAGAGTTCCACTA
TGTAGCTTTGTGAGATTGGCTCGTTGGCCATGTCCTGCTGCTTGCCGGGC
ACAATCTTAATGAGCTTGGAGACGGTAATCTTCATGCGCCCCTTGCGGAA
CATATAGCCCTTTGCTATGTACTCGAACTCCAGGCGGAAGCCCATTTCCG
TGAGGAATTCCAAAATGCCATTGGTGCAGGCGCAGTCCATGCAGCTGCGT
ACCAATGTAGGCCGGCGCAGATCCACCTCGGGGTTTCCTAGGTAGCGCAT
CTGAAAGGGTGCATCGCGACCAAGGGCTCGGCGCACGCGAAGAAGCAGCG
GCTGGTTGGCATTGGGCTGGCGAAGGCTCATGTCGACTGATAACT

BS13910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14802-PA 654 MED18-RA 190..654 481..17 2325 100 Minus
CG14802-PB 465 MED18-RB 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..782 481..17 2325 100 Minus
MED18-RA 842 CG14802-RA 295..759 481..17 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866804 259..17 1215 100 Minus
X 23542271 X 1866273..1866496 481..258 1120 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:14:14 has no hits.

BS13910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:32 Download gff for BS13910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14802-PB 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:53 Download gff for BS13910.3prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 10..487 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:17 Download gff for BS13910.3prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 10..487 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:17 Download gff for BS13910.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1866269..1866495 259..487 98 -> Minus
X 1866563..1866807 10..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:53 Download gff for BS13910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760302..1760528 259..487 98 -> Minus
arm_X 1760596..1760840 10..258 98   Minus

BS13910.5prime Sequence

495 bp (495 high quality bases) assembled on 2006-10-13

> BS13910.5prime
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGTAGAAGCTTTCTAGACC

BS13910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14802-PA 654 MED18-RA 190..654 17..481 2325 100 Plus
CG14802-PB 465 MED18-RB 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..782 17..481 2325 100 Plus
MED18-RA 842 CG14802-RA 295..759 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866804 239..481 1215 100 Plus
X 23542271 X 1866273..1866496 17..240 1120 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:43:51 has no hits.

BS13910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:32 Download gff for BS13910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14802-PB 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:08 Download gff for BS13910.5prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 11..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:59 Download gff for BS13910.5prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 11..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:59 Download gff for BS13910.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1866269..1866495 11..239 98 -> Plus
X 1866563..1866807 240..488 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:08 Download gff for BS13910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760596..1760840 240..488 98   Plus
arm_X 1760302..1760528 11..239 98 -> Plus

BS13910.complete Sequence

497 bp assembled on 2006-11-01

> BS13910.complete
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGTAGAAGCTTTCTAGACCAT

BS13910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 654 CG14802-PA 190..654 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..782 17..481 2325 100 Plus
MED18-RA 842 CG14802-RA 295..759 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866804 239..481 1215 100 Plus
X 23542271 X 1866273..1866496 17..240 1120 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:31:12 has no hits.

BS13910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:28 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 186..654 11..481 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:10 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RC 314..785 11..488 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:40 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 295..759 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:28 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RC 314..785 11..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:56 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 295..759 17..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:56 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866273..1866495 17..239 100 -> Plus
X 1866563..1866804 240..481 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:40 Download gff for BS13910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760306..1760528 17..239 100 -> Plus
arm_X 1760596..1760837 240..481 100   Plus

BS13910.pep Sequence

Translation from 16 to 480

> BS13910.pep
MSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVDLRRPTLVRSCMDC
ACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPGKQQD
MANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL
GGMP*

BS13910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-PA 217 CG14802-PA 64..217 1..154 790 100 Plus