Clone Sequence Records
BS13911.3prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13911.3prime
ATGGTCTAGAAAGCTTTCAGTCCACAATCTGCATGCGCAACTCGTTGGTC
ACGAATGACATGACAGTGTTAAGCACAGCCTGCTGAATGGAGGCGTTCTG
GACAATCAGCGGCAGCAGCATCACCACGTCGGTGGGATGTATGTCGGCCA
CGGCCATGGTTACGTGCTGCACCAGCTGCTCTCGCTGTGCGTCCGTCAGG
TCGTTTAGGATGACTTCGCCCAGCGGACGGAATGTGCCGCTTGTCATCTT
GTAGGCGGCGATTCCGCCGGCGGCCCCGCCAACCGCCAGCCCAACGGGGC
CCAGGAGCATGCCACCCGCAAAGGAGCAGGCGGCGCAGATTGCCGCTCCC
TTGCCGGACTGCTTGACGGCGACGCGGACGTTGCGCTCGTCCGCTACGAT
GGCTATCGCCTCCATCAACTCGCGCGTATCTATGGGCATGTCGACTGATA
ACT
BS13911.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 423 | CG3740-RA | 1..423 | 439..17 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..711 | 439..17 | 2115 | 100 | Minus |
Mur2B-RC | 6772 | CG14796-RC | 44..265 | 238..17 | 1110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668524..1668745 | 17..238 | 1110 | 100 | Plus |
X | 23542271 | X | 1668807..1669009 | 237..439 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:14:54 has no hits.
BS13911.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:33 Download gff for
BS13911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 17..439 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:55 Download gff for
BS13911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 12..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:21 Download gff for
BS13911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 12..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:21 Download gff for
BS13911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668518..1668744 | 12..237 | 98 | <- | Plus |
X | 1668808..1669009 | 238..439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:55 Download gff for
BS13911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562551..1562777 | 12..237 | 98 | <- | Plus |
arm_X | 1562841..1563042 | 238..439 | 100 | | Plus |
BS13911.5prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-13
> BS13911.5prime
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACTGAAAGCTTTCTAG
ACC
BS13911.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 423 | CG3740-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..711 | 17..439 | 2115 | 100 | Plus |
Mur2B-RC | 6772 | CG14796-RC | 44..265 | 218..439 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668524..1668745 | 439..218 | 1110 | 100 | Minus |
X | 23542271 | X | 1668807..1669009 | 219..17 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:54:27 has no hits.
BS13911.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:34 Download gff for
BS13911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:45 Download gff for
BS13911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:17 Download gff for
BS13911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:17 Download gff for
BS13911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668518..1668744 | 219..444 | 98 | <- | Minus |
X | 1668808..1669009 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:45 Download gff for
BS13911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562551..1562777 | 219..444 | 98 | <- | Minus |
arm_X | 1562841..1563042 | 17..218 | 100 | | Minus |
BS13911.complete Sequence
455 bp assembled on 2006-11-01
GenBank Submission: FJ637550
> BS13911.complete
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACTGAAAGCTTTCTAG
ACCAT
BS13911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 423 | CG3740-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..711 | 17..439 | 2115 | 100 | Plus |
Mur2B-RC | 6772 | CG14796-RC | 44..265 | 218..439 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668524..1668745 | 439..218 | 1110 | 100 | Minus |
X | 23542271 | X | 1668807..1669009 | 219..17 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:08 has no hits.
BS13911.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:33:10 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:13 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 271..696 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:08 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..710 | 17..438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:33:11 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 271..696 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:17 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..710 | 17..438 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:17 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668525..1668744 | 219..438 | 100 | <- | Minus |
X | 1668808..1669009 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:08 Download gff for
BS13911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562558..1562777 | 219..438 | 100 | <- | Minus |
arm_X | 1562841..1563042 | 17..218 | 100 | | Minus |
BS13911.pep Sequence
Translation from 16 to 438
> BS13911.pep
MPIDTRELMEAIAIVADERNVRVAVKQSGKGAAICAACSFAGGMLLGPVG
LAVGGAAGGIAAYKMTSGTFRPLGEVILNDLTDAQREQLVQHVTMAVADI
HPTDVVMLLPLIVQNASIQQAVLNTVMSFVTNELRMQIVD*
BS13911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 140 | CG3740-PA | 1..140 | 1..140 | 689 | 100 | Plus |
CG11671-PA | 140 | CG11671-PA | 7..140 | 7..140 | 349 | 47.8 | Plus |