Clone BS13911 Report

Search the DGRC for BS13911

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3740-RA
Protein status:BS13911.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13911.3prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13911.3prime
ATGGTCTAGAAAGCTTTCAGTCCACAATCTGCATGCGCAACTCGTTGGTC
ACGAATGACATGACAGTGTTAAGCACAGCCTGCTGAATGGAGGCGTTCTG
GACAATCAGCGGCAGCAGCATCACCACGTCGGTGGGATGTATGTCGGCCA
CGGCCATGGTTACGTGCTGCACCAGCTGCTCTCGCTGTGCGTCCGTCAGG
TCGTTTAGGATGACTTCGCCCAGCGGACGGAATGTGCCGCTTGTCATCTT
GTAGGCGGCGATTCCGCCGGCGGCCCCGCCAACCGCCAGCCCAACGGGGC
CCAGGAGCATGCCACCCGCAAAGGAGCAGGCGGCGCAGATTGCCGCTCCC
TTGCCGGACTGCTTGACGGCGACGCGGACGTTGCGCTCGTCCGCTACGAT
GGCTATCGCCTCCATCAACTCGCGCGTATCTATGGGCATGTCGACTGATA
ACT

BS13911.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 423 CG3740-RA 1..423 439..17 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..711 439..17 2115 100 Minus
Mur2B-RC 6772 CG14796-RC 44..265 238..17 1110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668524..1668745 17..238 1110 100 Plus
X 23542271 X 1668807..1669009 237..439 1015 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:14:54 has no hits.

BS13911.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:33 Download gff for BS13911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:55 Download gff for BS13911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 12..439 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:21 Download gff for BS13911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 12..439 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:21 Download gff for BS13911.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1668518..1668744 12..237 98 <- Plus
X 1668808..1669009 238..439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:55 Download gff for BS13911.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562551..1562777 12..237 98 <- Plus
arm_X 1562841..1563042 238..439 100   Plus

BS13911.5prime Sequence

453 bp (453 high quality bases) assembled on 2006-10-13

> BS13911.5prime
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACTGAAAGCTTTCTAG
ACC

BS13911.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 423 CG3740-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..711 17..439 2115 100 Plus
Mur2B-RC 6772 CG14796-RC 44..265 218..439 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668524..1668745 439..218 1110 100 Minus
X 23542271 X 1668807..1669009 219..17 1015 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:54:27 has no hits.

BS13911.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:34 Download gff for BS13911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:45 Download gff for BS13911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:17 Download gff for BS13911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:17 Download gff for BS13911.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1668518..1668744 219..444 98 <- Minus
X 1668808..1669009 17..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:45 Download gff for BS13911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562551..1562777 219..444 98 <- Minus
arm_X 1562841..1563042 17..218 100   Minus

BS13911.complete Sequence

455 bp assembled on 2006-11-01

GenBank Submission: FJ637550

> BS13911.complete
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACTGAAAGCTTTCTAG
ACCAT

BS13911.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 423 CG3740-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..711 17..439 2115 100 Plus
Mur2B-RC 6772 CG14796-RC 44..265 218..439 1110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668524..1668745 439..218 1110 100 Minus
X 23542271 X 1668807..1669009 219..17 1015 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:31:08 has no hits.

BS13911.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:33:10 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:13 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 271..696 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:08 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..710 17..438 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:33:11 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 271..696 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:17 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..710 17..438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:17 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
X 1668525..1668744 219..438 100 <- Minus
X 1668808..1669009 17..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:08 Download gff for BS13911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562558..1562777 219..438 100 <- Minus
arm_X 1562841..1563042 17..218 100   Minus

BS13911.pep Sequence

Translation from 16 to 438

> BS13911.pep
MPIDTRELMEAIAIVADERNVRVAVKQSGKGAAICAACSFAGGMLLGPVG
LAVGGAAGGIAAYKMTSGTFRPLGEVILNDLTDAQREQLVQHVTMAVADI
HPTDVVMLLPLIVQNASIQQAVLNTVMSFVTNELRMQIVD*

BS13911.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 140 CG3740-PA 1..140 1..140 689 100 Plus
CG11671-PA 140 CG11671-PA 7..140 7..140 349 47.8 Plus