Clone Sequence Records
BS13916.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS13916.3prime
ATGGTCTAGAAAGCTTCTATAAACTGGCCATCAGCAGCTGGGAGCCGTTG
AGAGCCAAGGATAGTGGCGTGGCCATCGTTGTCGTGGTGGTCGCGTTTCT
GCTAATTGCTCTATTTGGGAGACAGACACTGTCGGAATAGGCCATAACCA
GTCCAGCAATCAGGGTCAGCAGGAAAGTCAGGCCCAGGAGCCCGCAGCTG
AGGCGCCGTACGGCCTGCCACCAGGGATCCAGAGCGAAGGGCAGGAGCTC
CTCGAGCGTCAGTCCGTAGGAATAGTCAGCAGTTGTGAAAATGGGCTCAT
AATCCTTTGGATCCTTCCCCGTCGCGGGCACGACAATGATGTGCTGCTGC
TGCCGCTGCTGCCGCTGCTGATGTCCTTGTTGCGTTGCCAGAAGCGCTGT
CTTCTCGTTGCAGGACATGTCGACTGATAACT
BS13916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PA | 402 | CG5697-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..578 | 418..17 | 2010 | 100 | Minus |
CG5697-RC | 888 | CG5697-RC | 126..527 | 418..17 | 2010 | 100 | Minus |
CG5697-RB | 921 | CG5697-RB | 159..560 | 418..17 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016759 | 275..17 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 21016285..21016427 | 418..276 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:04:42 has no hits.
BS13916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:36 Download gff for
BS13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:06 Download gff for
BS13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..564 | 13..418 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:25 Download gff for
BS13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..564 | 13..418 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:25 Download gff for
BS13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016285..21016427 | 276..418 | 100 | -> | Minus |
3R | 21016501..21016763 | 13..275 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:06 Download gff for
BS13916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 276..418 | 100 | -> | Minus |
arm_3R | 16842223..16842485 | 13..275 | 99 | | Minus |
BS13916.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-10-13
> BS13916.5prime
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAACGGCTCCCAGCTG
CTGATGGCCAGTTTATAGAAGCTTTCTAGACC
BS13916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PA | 402 | CG5697-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..578 | 17..418 | 2010 | 100 | Plus |
CG5697-RC | 888 | CG5697-RC | 126..527 | 17..418 | 2010 | 100 | Plus |
CG5697-RB | 921 | CG5697-RB | 159..560 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016759 | 160..418 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 21016285..21016427 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:54:39 has no hits.
BS13916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for
BS13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:46 Download gff for
BS13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..564 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:20 Download gff for
BS13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..564 | 17..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:20 Download gff for
BS13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016285..21016427 | 17..159 | 100 | -> | Plus |
3R | 21016501..21016763 | 160..422 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:46 Download gff for
BS13916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 17..159 | 100 | -> | Plus |
arm_3R | 16842223..16842485 | 160..422 | 99 | | Plus |
BS13916.complete Sequence
434 bp assembled on 2006-11-01
GenBank Submission: FJ637551
> BS13916.complete
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAACGGCTCCCAGCTG
CTGATGGCCAGTTTATAGAAGCTTTCTAGACCAT
BS13916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 402 | CG5697-PD | 1..402 | 17..418 | 2010 | 100 | Plus |
CG5697-RC | 402 | CG5697-PC | 1..402 | 17..418 | 2010 | 100 | Plus |
CG5697-RB | 402 | CG5697-PB | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-RD | 939 | CG5697-RD | 177..578 | 17..418 | 2010 | 100 | Plus |
CG5697-RC | 888 | CG5697-RC | 126..527 | 17..418 | 2010 | 100 | Plus |
CG5697-RB | 921 | CG5697-RB | 159..560 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21016501..21016759 | 160..418 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 21016285..21016427 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:17 has no hits.
BS13916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:01 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:48 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 225..630 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:56 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..560 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:01 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RA | 225..630 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:39 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5697-RB | 159..560 | 17..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:39 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21016285..21016427 | 17..159 | 100 | -> | Plus |
3R | 21016501..21016759 | 160..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:56 Download gff for
BS13916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16842007..16842149 | 17..159 | 100 | -> | Plus |
arm_3R | 16842223..16842481 | 160..418 | 100 | | Plus |
BS13916.pep Sequence
Translation from 16 to 417
> BS13916.pep
MSCNEKTALLATQQGHQQRQQRQQQHIIVVPATGKDPKDYEPIFTTADYS
YGLTLEELLPFALDPWWQAVRRLSCGLLGLTFLLTLIAGLVMAYSDSVCL
PNRAISRNATTTTTMATPLSLALNGSQLLMASL*
BS13916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5697-PD | 133 | CG5697-PD | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PC | 133 | CG5697-PC | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PB | 133 | CG5697-PB | 1..133 | 1..133 | 682 | 100 | Plus |
CG5697-PA | 133 | CG5697-PA | 1..133 | 1..133 | 682 | 100 | Plus |