Clone BS13916 Report

Search the DGRC for BS13916

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5697-RA
Protein status:BS13916.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13916.3prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS13916.3prime
ATGGTCTAGAAAGCTTCTATAAACTGGCCATCAGCAGCTGGGAGCCGTTG
AGAGCCAAGGATAGTGGCGTGGCCATCGTTGTCGTGGTGGTCGCGTTTCT
GCTAATTGCTCTATTTGGGAGACAGACACTGTCGGAATAGGCCATAACCA
GTCCAGCAATCAGGGTCAGCAGGAAAGTCAGGCCCAGGAGCCCGCAGCTG
AGGCGCCGTACGGCCTGCCACCAGGGATCCAGAGCGAAGGGCAGGAGCTC
CTCGAGCGTCAGTCCGTAGGAATAGTCAGCAGTTGTGAAAATGGGCTCAT
AATCCTTTGGATCCTTCCCCGTCGCGGGCACGACAATGATGTGCTGCTGC
TGCCGCTGCTGCCGCTGCTGATGTCCTTGTTGCGTTGCCAGAAGCGCTGT
CTTCTCGTTGCAGGACATGTCGACTGATAACT

BS13916.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PA 402 CG5697-RA 1..402 418..17 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..578 418..17 2010 100 Minus
CG5697-RC 888 CG5697-RC 126..527 418..17 2010 100 Minus
CG5697-RB 921 CG5697-RB 159..560 418..17 2010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016759 275..17 1295 100 Minus
3R 32079331 3R 21016285..21016427 418..276 715 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:04:42 has no hits.

BS13916.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:36 Download gff for BS13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 17..418 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:06 Download gff for BS13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..564 13..418 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:25 Download gff for BS13916.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..564 13..418 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:25 Download gff for BS13916.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 276..418 100 -> Minus
3R 21016501..21016763 13..275 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:06 Download gff for BS13916.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 276..418 100 -> Minus
arm_3R 16842223..16842485 13..275 99   Minus

BS13916.5prime Sequence

432 bp (432 high quality bases) assembled on 2006-10-13

> BS13916.5prime
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAACGGCTCCCAGCTG
CTGATGGCCAGTTTATAGAAGCTTTCTAGACC

BS13916.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PA 402 CG5697-RA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..578 17..418 2010 100 Plus
CG5697-RC 888 CG5697-RC 126..527 17..418 2010 100 Plus
CG5697-RB 921 CG5697-RB 159..560 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016759 160..418 1295 100 Plus
3R 32079331 3R 21016285..21016427 17..159 715 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:54:39 has no hits.

BS13916.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for BS13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-PA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:46 Download gff for BS13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..564 17..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:20 Download gff for BS13916.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..564 17..422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:20 Download gff for BS13916.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 17..159 100 -> Plus
3R 21016501..21016763 160..422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:46 Download gff for BS13916.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 17..159 100 -> Plus
arm_3R 16842223..16842485 160..422 99   Plus

BS13916.complete Sequence

434 bp assembled on 2006-11-01

GenBank Submission: FJ637551

> BS13916.complete
GAAGTTATCAGTCGACATGTCCTGCAACGAGAAGACAGCGCTTCTGGCAA
CGCAACAAGGACATCAGCAGCGGCAGCAGCGGCAGCAGCAGCACATCATT
GTCGTGCCCGCGACGGGGAAGGATCCAAAGGATTATGAGCCCATTTTCAC
AACTGCTGACTATTCCTACGGACTGACGCTCGAGGAGCTCCTGCCCTTCG
CTCTGGATCCCTGGTGGCAGGCCGTACGGCGCCTCAGCTGCGGGCTCCTG
GGCCTGACTTTCCTGCTGACCCTGATTGCTGGACTGGTTATGGCCTATTC
CGACAGTGTCTGTCTCCCAAATAGAGCAATTAGCAGAAACGCGACCACCA
CGACAACGATGGCCACGCCACTATCCTTGGCTCTCAACGGCTCCCAGCTG
CTGATGGCCAGTTTATAGAAGCTTTCTAGACCAT

BS13916.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 402 CG5697-PD 1..402 17..418 2010 100 Plus
CG5697-RC 402 CG5697-PC 1..402 17..418 2010 100 Plus
CG5697-RB 402 CG5697-PB 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-RD 939 CG5697-RD 177..578 17..418 2010 100 Plus
CG5697-RC 888 CG5697-RC 126..527 17..418 2010 100 Plus
CG5697-RB 921 CG5697-RB 159..560 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21016501..21016759 160..418 1295 100 Plus
3R 32079331 3R 21016285..21016427 17..159 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:17 has no hits.

BS13916.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:01 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:48 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 225..630 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:56 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..560 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:01 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RA 225..630 17..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:39 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
CG5697-RB 159..560 17..418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:39 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21016285..21016427 17..159 100 -> Plus
3R 21016501..21016759 160..418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:56 Download gff for BS13916.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16842007..16842149 17..159 100 -> Plus
arm_3R 16842223..16842481 160..418 100   Plus

BS13916.pep Sequence

Translation from 16 to 417

> BS13916.pep
MSCNEKTALLATQQGHQQRQQRQQQHIIVVPATGKDPKDYEPIFTTADYS
YGLTLEELLPFALDPWWQAVRRLSCGLLGLTFLLTLIAGLVMAYSDSVCL
PNRAISRNATTTTTMATPLSLALNGSQLLMASL*

BS13916.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5697-PD 133 CG5697-PD 1..133 1..133 682 100 Plus
CG5697-PC 133 CG5697-PC 1..133 1..133 682 100 Plus
CG5697-PB 133 CG5697-PB 1..133 1..133 682 100 Plus
CG5697-PA 133 CG5697-PA 1..133 1..133 682 100 Plus