Clone BS13917 Report

Search the DGRC for BS13917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11413-RA
Protein status:BS13917.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13917.3prime Sequence

459 bp (459 high quality bases) assembled on 2006-10-13

> BS13917.3prime
ATGGTCTAGAAAGCTTTTATAGCTTGCCCTTGCCATGGTGTCCATGATGT
CCATGATGTCCGTGGCCGTGACCACCGCCACCTCCGCCAACCGCCACGGG
CTTGACCACCACCACCGGCTTCACAATCACCGGCTTTATGATCACTGGCT
TTGGTTTCACGAACTTGGAGAGCAGCTGGCTGGGATCCTTGAGGATAGCG
GGCTTGGGCGGCAGTTTGGCGAGCAGCTGGCTGGGATCTGGGAGAGCTGG
TTTGGATTGCGCGATTTTGGCTAGTAATTTAGAGGGATCCTTGAGAAAGT
CCGGCTTTGGCGGTAGCTTGGCTAGCAACTGGCTGGGATCCGGCAGCGCT
GGCTTGGTTTTCTGGATGGTGATCGTGGCCTGGGCGCAGACACACAGGCA
AGCTCCGATGACCAGGAGCAGCAGGTGCCTCTTGAGAAGATCCATGTCGA
CTGATAACT

BS13917.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 429 CG11413-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..438 446..17 2150 100 Minus
CG4622-RC 2762 CG4622-RC 369..798 17..446 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536627 446..17 2150 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:27:48 has no hits.

BS13917.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for BS13917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:55 Download gff for BS13917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 2..445 5..453 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:36 Download gff for BS13917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 362..805 5..453 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:36 Download gff for BS13917.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24536191..24536634 5..453 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:55 Download gff for BS13917.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423714..20424157 5..453 98   Minus

BS13917.5prime Sequence

459 bp (459 high quality bases) assembled on 2006-10-13

> BS13917.5prime
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTATAAAAGCT
TTCTAGACC

BS13917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 429 CG11413-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..438 16..445 2150 100 Plus
CG4622-RC 2762 CG4622-RC 369..798 445..16 2150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536627 16..445 2150 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:56:57 has no hits.

BS13917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for BS13917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:33 Download gff for BS13917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 2..445 9..457 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for BS13917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 362..805 9..457 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for BS13917.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24536191..24536634 9..457 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:33 Download gff for BS13917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423714..20424157 9..457 98   Plus

BS13917.complete Sequence

461 bp assembled on 2006-11-01

GenBank Submission: FJ637552

> BS13917.complete
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTATAAAAGCT
TTCTAGACCAT

BS13917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 429 CG11413-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..438 16..445 2150 100 Plus
CG4622-RC 2762 CG4622-RC 369..798 445..16 2150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536627 16..445 2150 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:45:08 has no hits.

BS13917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:02 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:42 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RB 298..741 9..457 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:04 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 10..436 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:02 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RB 298..741 9..457 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:27 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 371..797 17..443 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:27 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24536199..24536625 17..443 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:04 Download gff for BS13917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423722..20424148 17..443 100   Plus

BS13917.pep Sequence

Translation from 16 to 444

> BS13917.pep
MDLLKRHLLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDF
LKDPSKLLAKIAQSKPALPDPSQLLAKLPPKPAILKDPSQLLSKFVKPKP
VIIKPVIVKPVVVVKPVAVGGGGGGHGHGHHGHHGHHGKGKL*

BS13917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 142 CG11413-PA 1..142 1..142 749 100 Plus