Clone Sequence Records
BS13917.3prime Sequence
459 bp (459 high quality bases) assembled on 2006-10-13
> BS13917.3prime
ATGGTCTAGAAAGCTTTTATAGCTTGCCCTTGCCATGGTGTCCATGATGT
CCATGATGTCCGTGGCCGTGACCACCGCCACCTCCGCCAACCGCCACGGG
CTTGACCACCACCACCGGCTTCACAATCACCGGCTTTATGATCACTGGCT
TTGGTTTCACGAACTTGGAGAGCAGCTGGCTGGGATCCTTGAGGATAGCG
GGCTTGGGCGGCAGTTTGGCGAGCAGCTGGCTGGGATCTGGGAGAGCTGG
TTTGGATTGCGCGATTTTGGCTAGTAATTTAGAGGGATCCTTGAGAAAGT
CCGGCTTTGGCGGTAGCTTGGCTAGCAACTGGCTGGGATCCGGCAGCGCT
GGCTTGGTTTTCTGGATGGTGATCGTGGCCTGGGCGCAGACACACAGGCA
AGCTCCGATGACCAGGAGCAGCAGGTGCCTCTTGAGAAGATCCATGTCGA
CTGATAACT
BS13917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 429 | CG11413-RA | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..438 | 446..17 | 2150 | 100 | Minus |
CG4622-RC | 2762 | CG4622-RC | 369..798 | 17..446 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536627 | 446..17 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:27:48 has no hits.
BS13917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for
BS13917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:55 Download gff for
BS13917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 2..445 | 5..453 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:36 Download gff for
BS13917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 362..805 | 5..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:36 Download gff for
BS13917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536191..24536634 | 5..453 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:55 Download gff for
BS13917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423714..20424157 | 5..453 | 98 | | Minus |
BS13917.5prime Sequence
459 bp (459 high quality bases) assembled on 2006-10-13
> BS13917.5prime
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTATAAAAGCT
TTCTAGACC
BS13917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 429 | CG11413-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..438 | 16..445 | 2150 | 100 | Plus |
CG4622-RC | 2762 | CG4622-RC | 369..798 | 445..16 | 2150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536627 | 16..445 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:56:57 has no hits.
BS13917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:37 Download gff for
BS13917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:33 Download gff for
BS13917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 2..445 | 9..457 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for
BS13917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 362..805 | 9..457 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for
BS13917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536191..24536634 | 9..457 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:33 Download gff for
BS13917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423714..20424157 | 9..457 | 98 | | Plus |
BS13917.complete Sequence
461 bp assembled on 2006-11-01
GenBank Submission: FJ637552
> BS13917.complete
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTATAAAAGCT
TTCTAGACCAT
BS13917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 429 | CG11413-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..438 | 16..445 | 2150 | 100 | Plus |
CG4622-RC | 2762 | CG4622-RC | 369..798 | 445..16 | 2150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536627 | 16..445 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:45:08 has no hits.
BS13917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:02 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:42 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RB | 298..741 | 9..457 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:04 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 10..436 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:02 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RB | 298..741 | 9..457 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:27 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 371..797 | 17..443 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:27 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536199..24536625 | 17..443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:04 Download gff for
BS13917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423722..20424148 | 17..443 | 100 | | Plus |
BS13917.pep Sequence
Translation from 16 to 444
> BS13917.pep
MDLLKRHLLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDF
LKDPSKLLAKIAQSKPALPDPSQLLAKLPPKPAILKDPSQLLSKFVKPKP
VIIKPVIVKPVVVVKPVAVGGGGGGHGHGHHGHHGHHGKGKL*
BS13917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 142 | CG11413-PA | 1..142 | 1..142 | 749 | 100 | Plus |