Clone Sequence Records
BS13918.3prime Sequence
519 bp (519 high quality bases) assembled on 2006-10-13
> BS13918.3prime
ATGGTCTAGAAAGCTTTCAGTCGAAGGCAATGGAGAAATCCGTCTTAAAA
CTGCGCCGATCGATGGAGTACATGTTGTCGGCGGTGCATTCGTAGAGTCC
AGCGTCCATCTGTGTGGCAGGGTCAATTTCGATCTTCGACTTGACCTTGT
CGTCGCCGATGCGCCATTCGTGTACGTGCATATAGAGGTGCTGATAGATC
TCCGCTCCGTCCTTGTACCAGGTGATATGGGGTCGGGGATTGCCCTTGGC
CACGCACAAAAAGGCGATCTTGTGGCCCAGAACGTACTCAAGATCGAAGT
GCGAGGCTTGTAGGATTTTGGCGCCATTATTATTATTGTAGTACTGATCG
GACTCCGGATCGCGATATTTTCCGGTAATTGGCAATCCGATCTGCACCCT
GGACTTGGTTCGTCCACGTCCACGCCCTCGGCGCGCTTCGCAAACGGGCG
TGGCCAGCATTAATAGCCCCAAAGCGAGACAGACGATCAGGCACTTAACC
TGCATGTCGACTGATAACT
BS13918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 489 | CG14141-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..601 | 506..17 | 2450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202004 | 325..17 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 11201462..11201643 | 506..325 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:00 has no hits.
BS13918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:38 Download gff for
BS13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:31 Download gff for
BS13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..605 | 13..512 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:00 Download gff for
BS13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..605 | 13..512 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:00 Download gff for
BS13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201457..11201642 | 326..512 | 98 | -> | Minus |
| 3L | 11201696..11202008 | 13..325 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:31 Download gff for
BS13918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194557..11194742 | 326..512 | 98 | -> | Minus |
| arm_3L | 11194796..11195108 | 13..325 | 99 | | Minus |
BS13918.5prime Sequence
519 bp (516 high quality bases) assembled on 2006-10-13
> BS13918.5prime
GAAGTTATCAGTCGACATGCAGGTTAAGTGCCTGATCGTCTGTCTCGCTT
TGGGGCTATTAATGCTGGCCACGCCCGTTTGCGAAGCGCGCCGAGGGCGT
GGACGTGGACGAACCAAGTCCAGGGTGCAGATCGGATTGCCAATTACCGG
AAAATATCGCGATCCGGAGTCCGATCAGTACTACAATAATAATAATGGCG
CCAAAATCCTACAAGCCTCGCACTTCGATCTTGAGTACGTTCTGGGCCAC
AAGATCGCCTTTTTGTGCGTGGCCAAGGGCAATCCCCGACCCCATATCAC
CTGGTACAAGGACGGAGCGGAGATCTATCAGCACCTCTATATGCACGTAC
ACGAATGGCGCATCGGCGACGACAAGGTCAAGTCGAAGATCGAAATTGAC
CCTGCCACACAGATGGACGCTGGACTCTACGAATGCACCGCCGACAACAT
GTACTCCATCGATCGGCGCAGTTTTTAAACGGATTTCTCCCTTGCCTTCG
ACTGAAAGCTTTCTAGACC
BS13918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 489 | CG14141-RA | 1..489 | 17..505 | 2370 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..601 | 16..505 | 2405 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202004 | 197..505 | 1500 | 99 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:50:44 has no hits.
BS13918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:40 Download gff for
BS13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-PA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:07 Download gff for
BS13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..605 | 10..509 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:15 Download gff for
BS13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..605 | 10..509 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:15 Download gff for
BS13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201457..11201642 | 10..196 | 98 | -> | Plus |
| 3L | 11201696..11202008 | 197..509 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:07 Download gff for
BS13918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194557..11194742 | 10..196 | 98 | -> | Plus |
| arm_3L | 11194796..11195108 | 197..509 | 98 | | Plus |
BS13918.complete Sequence
521 bp assembled on 2006-11-01
GenBank Submission: FJ637553
> BS13918.complete
GAAGTTATCAGTCGACATGCAGGTTAAGTGCCTGATCGTCTGTCTCGCTT
TGGGGCTATTAATGCTGGCCACGCCCGTTTGCGAAGCGCGCCGAGGGCGT
GGACGTGGACGAACCAAGTCCAGGGTGCAGATCGGATTGCCAATTACCGG
AAAATATCGCGATCCGGAGTCCGATCAGTACTACAATAATAATAATGGCG
CCAAAATCCTACAAGCCTCGCACTTCGATCTTGAGTACGTTCTGGGCCAC
AAGATCGCCTTTTTGTGCGTGGCCAAGGGCAATCCCCGACCCCATATCAC
CTGGTACAAGGACGGAGCGGAGATCTATCAGCACCTCTATATGCACGTAC
ACGAATGGCGCATCGGCGACGACAAGGTCAAGTCGAAGATCGAAATTGAC
CCTGCCACACAGATGGACGCTGGACTCTACGAATGCACCGCCGACAACAT
GTACTCCATCGATCGGCGCAGTTTTAAGACGGATTTCTCCATTGCCTTCG
ACTGAAAGCTTTCTAGACCAT
BS13918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 489 | CG14141-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..601 | 16..505 | 2450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202004 | 197..505 | 1545 | 100 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:35 has no hits.
BS13918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:29 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:20 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 152..650 | 10..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:00 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 113..600 | 17..504 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:29 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 152..650 | 10..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:19 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 113..600 | 17..504 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:19 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201696..11202003 | 197..504 | 100 | | Plus |
| 3L | 11201463..11201642 | 17..196 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:00 Download gff for
BS13918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194563..11194742 | 17..196 | 100 | -> | Plus |
| arm_3L | 11194796..11195103 | 197..504 | 100 | | Plus |
BS13918.pep Sequence
Translation from 16 to 504
> BS13918.pep
MQVKCLIVCLALGLLMLATPVCEARRGRGRGRTKSRVQIGLPITGKYRDP
ESDQYYNNNNGAKILQASHFDLEYVLGHKIAFLCVAKGNPRPHITWYKDG
AEIYQHLYMHVHEWRIGDDKVKSKIEIDPATQMDAGLYECTADNMYSIDR
RSFKTDFSIAFD*
BS13918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-PA | 162 | CG14141-PA | 1..162 | 1..162 | 873 | 100 | Plus |
| CG7607-PA | 167 | CG7607-PA | 11..162 | 7..157 | 417 | 52 | Plus |
