Clone BS13923 Report

Search the DGRC for BS13923

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS13923.pep:
Sequenced Size:16

Clone Sequence Records

BS13923.3prime Sequence

507 bp (479 high quality bases) assembled on 2006-10-13

> BS13923.3prime
ATGGTCTAGAAAGCTTTCATTGGCGCACTTGTCCGCCGAGTCGTCCATGT
CCTCGTAAAAACAGGAACGCGAAATCACCCGCTTGCCGTAGACTTCTTGC
ACCAGTTTCTTGCAGACAGGCCGGGCATTCACCGATTTGGCGCCCACCGA
GTAGGTGCAGTTCACGTAGCTCCAGTACCGCTGCTGCTCCGAAATGGTCT
CCGGCATGAAGGGATCGTTGCAGAACTCGCCATTGGAGACGTCCGTCGAA
CAGCGCCAGCATCGCAGCACCGCGGAAGCTGTATTGAAAACCATCAGCAA
GGAGAAAAGGCCCAGCAAGAGGCAGCCGGTTGAACCGTAGGCCATGATAC
AATAATTCCTTCTTTTTATGCGTTTCTCGGTTGATTCCAGGTATATCACT
GCACAAGCACTGCACTTTAGGGGTATTTGAATTTGCCTTAGCTAACGATA
CTCCACAATAACATTCGCTTTGCGCGATTTTCCGAACACGCATGTCGACT
GATAACT

BS13923.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-PA 480 CG31676-RA 1..329 345..17 1620 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..557 494..17 2375 99.8 Minus
CG31676-RA 1056 CG31676-RA 29..506 494..17 2375 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 494..279 1080 100 Minus
2L 23513712 2L 20845340..20845528 281..93 930 99.5 Minus
2L 23513712 2L 20848555..20848632 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:37:21 has no hits.

BS13923.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:43 Download gff for BS13923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..329 17..345 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:35 Download gff for BS13923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..506 17..506 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:45 Download gff for BS13923.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..506 17..506 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:45 Download gff for BS13923.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20840817..20841044 279..506 97 -> Minus
2L 20845343..20845528 93..278 99 -> Minus
2L 20848557..20848632 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:35 Download gff for BS13923.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840817..20841044 279..506 97 -> Minus
arm_2L 20845343..20845528 93..278 99 -> Minus
arm_2L 20848557..20848632 17..92 100   Minus

BS13923.5prime Sequence

465 bp (450 high quality bases) assembled on 2006-10-13

> BS13923.5prime
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGG

BS13923.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-PA 480 CG31676-RA 1..301 165..465 1480 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..529 16..465 2235 99.8 Plus
CG31676-RA 1056 CG31676-RA 29..478 16..465 2235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 16..231 1080 100 Plus
2L 23513712 2L 20845340..20845528 229..417 930 99.5 Plus
2L 23513712 2L 20848555..20848604 416..465 250 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:14:04 has no hits.

BS13923.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:44 Download gff for BS13923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..301 165..465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:25 Download gff for BS13923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..478 4..465 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:39 Download gff for BS13923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..478 4..465 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:39 Download gff for BS13923.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20840817..20841044 4..231 97 -> Plus
2L 20845343..20845528 232..417 99 -> Plus
2L 20848557..20848604 418..465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:25 Download gff for BS13923.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840817..20841044 4..231 97 -> Plus
arm_2L 20845343..20845528 232..417 99 -> Plus
arm_2L 20848557..20848604 418..465 100   Plus

BS13923.complete Sequence

509 bp assembled on 2006-11-01

> BS13923.complete
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAATGAAAGCTTT
CTAGACCAT

BS13923.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 480 CG31676-PB 1..329 165..493 1630 99.7 Plus
CG31676-RA 480 CG31676-PA 1..329 165..493 1630 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..557 16..493 2375 99.8 Plus
CG31676-RA 1056 CG31676-RA 29..506 16..493 2375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 16..231 1080 100 Plus
2L 23513712 2L 20845340..20845528 229..417 930 99.5 Plus
2L 23513712 2L 20848555..20848632 416..493 390 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:26:59 has no hits.

BS13923.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:43 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 1..329 165..493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:27 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 18..507 4..493 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:45 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 30..505 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:45 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 18..507 4..493 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:02 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 30..505 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:02 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20840830..20841044 17..231 100 -> Plus
2L 20845343..20845528 232..417 99 -> Plus
2L 20848557..20848631 418..492 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:45 Download gff for BS13923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840830..20841044 17..231 100 -> Plus
arm_2L 20845343..20845528 232..417 99 -> Plus
arm_2L 20848557..20848631 418..492 100   Plus

BS13923.pep Sequence

Translation from 16 to 492

> BS13923.pep
MRVRKIAQSECYCGVSLAKANSNTPKVQCLCSDIPGINRETHKKKELLYH
GLRFNRLPLAGPFLLADGFQYSFRGAAMLALFDGRLQWRVLQRSLHAGDH
FGAAAVLELRELHLLGGRQIGECPACLQETGARSLRQAGDFAFLFLRGHG
RLGGQVRQ*
Sequence BS13923.pep has no blast hits.