Clone Sequence Records
BS13923.3prime Sequence
507 bp (479 high quality bases) assembled on 2006-10-13
> BS13923.3prime
ATGGTCTAGAAAGCTTTCATTGGCGCACTTGTCCGCCGAGTCGTCCATGT
CCTCGTAAAAACAGGAACGCGAAATCACCCGCTTGCCGTAGACTTCTTGC
ACCAGTTTCTTGCAGACAGGCCGGGCATTCACCGATTTGGCGCCCACCGA
GTAGGTGCAGTTCACGTAGCTCCAGTACCGCTGCTGCTCCGAAATGGTCT
CCGGCATGAAGGGATCGTTGCAGAACTCGCCATTGGAGACGTCCGTCGAA
CAGCGCCAGCATCGCAGCACCGCGGAAGCTGTATTGAAAACCATCAGCAA
GGAGAAAAGGCCCAGCAAGAGGCAGCCGGTTGAACCGTAGGCCATGATAC
AATAATTCCTTCTTTTTATGCGTTTCTCGGTTGATTCCAGGTATATCACT
GCACAAGCACTGCACTTTAGGGGTATTTGAATTTGCCTTAGCTAACGATA
CTCCACAATAACATTCGCTTTGCGCGATTTTCCGAACACGCATGTCGACT
GATAACT
BS13923.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-PA | 480 | CG31676-RA | 1..329 | 345..17 | 1620 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..557 | 494..17 | 2375 | 99.8 | Minus |
CG31676-RA | 1056 | CG31676-RA | 29..506 | 494..17 | 2375 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 494..279 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 20845340..20845528 | 281..93 | 930 | 99.5 | Minus |
2L | 23513712 | 2L | 20848555..20848632 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:21 has no hits.
BS13923.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:43 Download gff for
BS13923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..329 | 17..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:35 Download gff for
BS13923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..506 | 17..506 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:45 Download gff for
BS13923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..506 | 17..506 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:45 Download gff for
BS13923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840817..20841044 | 279..506 | 97 | -> | Minus |
2L | 20845343..20845528 | 93..278 | 99 | -> | Minus |
2L | 20848557..20848632 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:35 Download gff for
BS13923.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840817..20841044 | 279..506 | 97 | -> | Minus |
arm_2L | 20845343..20845528 | 93..278 | 99 | -> | Minus |
arm_2L | 20848557..20848632 | 17..92 | 100 | | Minus |
BS13923.5prime Sequence
465 bp (450 high quality bases) assembled on 2006-10-13
> BS13923.5prime
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGG
BS13923.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-PA | 480 | CG31676-RA | 1..301 | 165..465 | 1480 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..529 | 16..465 | 2235 | 99.8 | Plus |
CG31676-RA | 1056 | CG31676-RA | 29..478 | 16..465 | 2235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 16..231 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 20845340..20845528 | 229..417 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 20848555..20848604 | 416..465 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:14:04 has no hits.
BS13923.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:44 Download gff for
BS13923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..301 | 165..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:25 Download gff for
BS13923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..478 | 4..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:39 Download gff for
BS13923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..478 | 4..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:39 Download gff for
BS13923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840817..20841044 | 4..231 | 97 | -> | Plus |
2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
2L | 20848557..20848604 | 418..465 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:25 Download gff for
BS13923.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840817..20841044 | 4..231 | 97 | -> | Plus |
arm_2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
arm_2L | 20848557..20848604 | 418..465 | 100 | | Plus |
BS13923.complete Sequence
509 bp assembled on 2006-11-01
> BS13923.complete
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAATGAAAGCTTT
CTAGACCAT
BS13923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 480 | CG31676-PB | 1..329 | 165..493 | 1630 | 99.7 | Plus |
CG31676-RA | 480 | CG31676-PA | 1..329 | 165..493 | 1630 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..557 | 16..493 | 2375 | 99.8 | Plus |
CG31676-RA | 1056 | CG31676-RA | 29..506 | 16..493 | 2375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 16..231 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 20845340..20845528 | 229..417 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 20848555..20848632 | 416..493 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:59 has no hits.
BS13923.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:43 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 1..329 | 165..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:27 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 18..507 | 4..493 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:45 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 30..505 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:45 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 18..507 | 4..493 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:02 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 30..505 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:02 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840830..20841044 | 17..231 | 100 | -> | Plus |
2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
2L | 20848557..20848631 | 418..492 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:45 Download gff for
BS13923.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840830..20841044 | 17..231 | 100 | -> | Plus |
arm_2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
arm_2L | 20848557..20848631 | 418..492 | 100 | | Plus |
BS13923.pep Sequence
Translation from 16 to 492
> BS13923.pep
MRVRKIAQSECYCGVSLAKANSNTPKVQCLCSDIPGINRETHKKKELLYH
GLRFNRLPLAGPFLLADGFQYSFRGAAMLALFDGRLQWRVLQRSLHAGDH
FGAAAVLELRELHLLGGRQIGECPACLQETGARSLRQAGDFAFLFLRGHG
RLGGQVRQ*
Sequence BS13923.pep has no blast hits.