Clone Sequence Records
BS13925.3prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS13925.3prime
ATGGTCTAGAAAGCTTTTACTTCCTAAAGCAGGAGATGGGATTAAAGTAG
CACTGCCGGTATCTAACTTGACGTTTGCTCTCGGGCAGCCGATAAAGTTC
ATTCACATTGCCGTAGGTGGGACTCCTCAAATAGGCGCTGTAACTGGTGG
GTCTGTATTGGGCAAAGAGCATCTGCAGCCGATCCATTGGAATATTGGGA
TAGATTGCCTGGGCTGGCATATCGTAGCCACCTCCATAGGCGCCTCGCAC
GTCCTCCGCGTCCTGGCCATCAAGTCCATCGGAGTCCGGTCCTGTTTCGG
CACCCGAAGGTCGGGCCTCGCTGAGGGCAAAGAACAGGGTGAGGAGTAGG
CCGTAGCACAATAATATCTGCACGAATTTCATCATGTCGACTGATAACT
BS13925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14919-PA | 369 | Ast-C-RA | 1..369 | 385..17 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..632 | 385..17 | 1845 | 100 | Minus |
AstC-RB | 1199 | CG14919-RB | 264..629 | 385..17 | 1790 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 147..287 | 705 | 100 | Plus |
2L | 23513712 | 2L | 11076735..11076864 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 11077122..11077221 | 286..385 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:51:15 has no hits.
BS13925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:45 Download gff for
BS13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14919-PA | 1..369 | 17..385 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:10 Download gff for
BS13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..635 | 11..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:21 Download gff for
BS13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..635 | 11..385 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:21 Download gff for
BS13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11076732..11076864 | 11..146 | 97 | <- | Plus |
2L | 11076927..11077066 | 147..286 | 100 | <- | Plus |
2L | 11077123..11077221 | 287..385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:10 Download gff for
BS13925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11076732..11076864 | 11..146 | 97 | <- | Plus |
arm_2L | 11076927..11077066 | 147..286 | 100 | <- | Plus |
arm_2L | 11077123..11077221 | 287..385 | 100 | | Plus |
BS13925.5prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS13925.5prime
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGTAAAAGCTTTCTAGACC
BS13925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14919-PA | 369 | Ast-C-RA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..632 | 17..385 | 1845 | 100 | Plus |
AstC-RB | 1199 | CG14919-RB | 264..629 | 17..385 | 1790 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 255..115 | 705 | 100 | Minus |
2L | 23513712 | 2L | 11076735..11076864 | 385..256 | 650 | 100 | Minus |
2L | 23513712 | 2L | 11077122..11077221 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:12:53 has no hits.
BS13925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:45 Download gff for
BS13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14919-PA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:53 Download gff for
BS13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..635 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:44 Download gff for
BS13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..635 | 17..391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:44 Download gff for
BS13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11076732..11076864 | 256..391 | 97 | <- | Minus |
2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
2L | 11077123..11077221 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:53 Download gff for
BS13925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11076732..11076864 | 256..391 | 97 | <- | Minus |
arm_2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
arm_2L | 11077123..11077221 | 17..115 | 100 | | Minus |
BS13925.complete Sequence
401 bp assembled on 2006-11-01
GenBank Submission: FJ637555
> BS13925.complete
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGTAAAAGCTTTCTAGACCA
T
BS13925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 369 | CG14919-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
AstC-RB | 366 | CG14919-PB | 1..366 | 17..385 | 1765 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-RA | 1202 | CG14919-RA | 264..632 | 17..385 | 1845 | 100 | Plus |
AstC-RB | 1199 | CG14919-RB | 264..629 | 17..385 | 1765 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11076927..11077067 | 255..115 | 705 | 100 | Minus |
2L | 23513712 | 2L | 11076735..11076864 | 385..256 | 650 | 100 | Minus |
2L | 23513712 | 2L | 11077122..11077221 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:26:50 has no hits.
BS13925.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:22 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 1..369 | 17..385 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:46 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 262..633 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:10 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 264..630 | 17..383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:22 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ast-C-RA | 262..633 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:22 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstC-RA | 264..630 | 17..383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:22 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11077123..11077221 | 17..115 | 100 | | Minus |
2L | 11076737..11076864 | 256..383 | 100 | <- | Minus |
2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:10 Download gff for
BS13925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11077123..11077221 | 17..115 | 100 | | Minus |
arm_2L | 11076737..11076864 | 256..383 | 100 | <- | Minus |
arm_2L | 11076927..11077066 | 116..255 | 100 | <- | Minus |
BS13925.pep Sequence
Translation from 16 to 384
> BS13925.pep
MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAY
GGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRL
PESKRQVRYRQCYFNPISCFRK*
BS13925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstC-PA | 122 | CG14919-PA | 1..122 | 1..122 | 651 | 100 | Plus |
AstC-PB | 121 | CG14919-PB | 1..121 | 1..122 | 635 | 99.2 | Plus |