Clone BS13925 Report

Search the DGRC for BS13925

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptAstC-RA
Protein status:BS13925.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13925.3prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS13925.3prime
ATGGTCTAGAAAGCTTTTACTTCCTAAAGCAGGAGATGGGATTAAAGTAG
CACTGCCGGTATCTAACTTGACGTTTGCTCTCGGGCAGCCGATAAAGTTC
ATTCACATTGCCGTAGGTGGGACTCCTCAAATAGGCGCTGTAACTGGTGG
GTCTGTATTGGGCAAAGAGCATCTGCAGCCGATCCATTGGAATATTGGGA
TAGATTGCCTGGGCTGGCATATCGTAGCCACCTCCATAGGCGCCTCGCAC
GTCCTCCGCGTCCTGGCCATCAAGTCCATCGGAGTCCGGTCCTGTTTCGG
CACCCGAAGGTCGGGCCTCGCTGAGGGCAAAGAACAGGGTGAGGAGTAGG
CCGTAGCACAATAATATCTGCACGAATTTCATCATGTCGACTGATAACT

BS13925.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14919-PA 369 Ast-C-RA 1..369 385..17 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-RA 1202 CG14919-RA 264..632 385..17 1845 100 Minus
AstC-RB 1199 CG14919-RB 264..629 385..17 1790 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11076927..11077067 147..287 705 100 Plus
2L 23513712 2L 11076735..11076864 17..146 650 100 Plus
2L 23513712 2L 11077122..11077221 286..385 500 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:51:15 has no hits.

BS13925.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:45 Download gff for BS13925.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14919-PA 1..369 17..385 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:10 Download gff for BS13925.3prime
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 264..635 11..385 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:21 Download gff for BS13925.3prime
Subject Subject Range Query Range Percent Splice Strand
AstC-RA 264..635 11..385 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:21 Download gff for BS13925.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11076732..11076864 11..146 97 <- Plus
2L 11076927..11077066 147..286 100 <- Plus
2L 11077123..11077221 287..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:10 Download gff for BS13925.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11076732..11076864 11..146 97 <- Plus
arm_2L 11076927..11077066 147..286 100 <- Plus
arm_2L 11077123..11077221 287..385 100   Plus

BS13925.5prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS13925.5prime
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGTAAAAGCTTTCTAGACC

BS13925.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14919-PA 369 Ast-C-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-RA 1202 CG14919-RA 264..632 17..385 1845 100 Plus
AstC-RB 1199 CG14919-RB 264..629 17..385 1790 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11076927..11077067 255..115 705 100 Minus
2L 23513712 2L 11076735..11076864 385..256 650 100 Minus
2L 23513712 2L 11077122..11077221 116..17 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:12:53 has no hits.

BS13925.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:45 Download gff for BS13925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14919-PA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:53 Download gff for BS13925.5prime
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 264..635 17..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:44 Download gff for BS13925.5prime
Subject Subject Range Query Range Percent Splice Strand
AstC-RA 264..635 17..391 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:44 Download gff for BS13925.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11076732..11076864 256..391 97 <- Minus
2L 11076927..11077066 116..255 100 <- Minus
2L 11077123..11077221 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:53 Download gff for BS13925.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11076732..11076864 256..391 97 <- Minus
arm_2L 11076927..11077066 116..255 100 <- Minus
arm_2L 11077123..11077221 17..115 100   Minus

BS13925.complete Sequence

401 bp assembled on 2006-11-01

GenBank Submission: FJ637555

> BS13925.complete
GAAGTTATCAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACG
GCCTACTCCTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGT
GCCGAAACAGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGA
CGTGCGAGGCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCT
ATCCCAATATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGA
CCCACCAGTTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAA
TGAACTTTATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGT
GCTACTTTAATCCCATCTCCTGCTTTAGGAAGTAAAAGCTTTCTAGACCA
T

BS13925.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-RA 369 CG14919-PA 1..369 17..385 1845 100 Plus
AstC-RB 366 CG14919-PB 1..366 17..385 1765 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-RA 1202 CG14919-RA 264..632 17..385 1845 100 Plus
AstC-RB 1199 CG14919-RB 264..629 17..385 1765 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11076927..11077067 255..115 705 100 Minus
2L 23513712 2L 11076735..11076864 385..256 650 100 Minus
2L 23513712 2L 11077122..11077221 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:26:50 has no hits.

BS13925.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:22 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:46 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 262..633 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:10 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 264..630 17..383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:22 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
Ast-C-RA 262..633 17..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:22 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
AstC-RA 264..630 17..383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:22 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11077123..11077221 17..115 100   Minus
2L 11076737..11076864 256..383 100 <- Minus
2L 11076927..11077066 116..255 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:10 Download gff for BS13925.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11077123..11077221 17..115 100   Minus
arm_2L 11076737..11076864 256..383 100 <- Minus
arm_2L 11076927..11077066 116..255 100 <- Minus

BS13925.pep Sequence

Translation from 16 to 384

> BS13925.pep
MMKFVQILLCYGLLLTLFFALSEARPSGAETGPDSDGLDGQDAEDVRGAY
GGGYDMPAQAIYPNIPMDRLQMLFAQYRPTSYSAYLRSPTYGNVNELYRL
PESKRQVRYRQCYFNPISCFRK*

BS13925.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
AstC-PA 122 CG14919-PA 1..122 1..122 651 100 Plus
AstC-PB 121 CG14919-PB 1..121 1..122 635 99.2 Plus