Clone Sequence Records
BS13926.3prime Sequence
495 bp (492 high quality bases) assembled on 2006-10-13
> BS13926.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTGGCTGTTGGCCAGGTGGTTGTCGAT
GACCCGCTGGATGATCATCAAGCAGTGGCGCTGCCTGGCCACCGTGTTGT
CGATCAGCTGTTCCGTGAACTGACTGGCCGCAATGTTCGTGTTGGGCGGT
ATATCCTGCGTGCAGGATATGTACCTGTTGAAGATCTCCGTGTTCAGCGA
CGTGGCCAGATACCGCTCGCTCTCGTCCTGCTGCTGCAGCTTGTCCAGCT
CCTGGGCGGCCAGCAACAGCTGATCCTTGGCCTTCTGATATGATTGCAGC
TCCTGCAGGCTGGCATACTCGGCGCTGCTCAGTTTCACGGACCTGCCGCC
GTCTTTCGTCATCTGGCGAATGTGGTACTTGCGCTCGGCCACAAAATTAC
CGAGCAAGTATCCTGTTATCAGCATGAAGAAGCCAATCGTTAGCACCAGG
GAGGCACAGGTGCGCTTGGAAACGTACTCGCGGAACTCCCGAGAG
BS13926.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-PA | 522 | CG15522-RA | 45..519 | 495..21 | 2375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-RB | 1381 | CG15522-RB | 713..1187 | 495..21 | 2375 | 100 | Minus |
CG15522-RA | 1101 | CG15522-RA | 433..907 | 495..21 | 2375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29928178..29928572 | 415..21 | 1975 | 100 | Minus |
3R | 32079331 | 3R | 29928039..29928122 | 495..412 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:17:06 has no hits.
BS13926.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for
BS13926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-PA | 45..522 | 17..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:43 Download gff for
BS13926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 433..918 | 6..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:00 Download gff for
BS13926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 433..918 | 6..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:00 Download gff for
BS13926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29928039..29928121 | 413..495 | 100 | -> | Minus |
3R | 29928181..29928583 | 6..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:43 Download gff for
BS13926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25753761..25753843 | 413..495 | 100 | -> | Minus |
arm_3R | 25753903..25754305 | 6..412 | 99 | | Minus |
BS13926.5prime Sequence
553 bp (518 high quality bases) assembled on 2006-10-13
> BS13926.5prime
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCCTAGAAGCTTTCTAG
ACC
BS13926.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-PA | 522 | CG15522-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-RB | 1381 | CG15522-RB | 669..1187 | 17..535 | 2595 | 100 | Plus |
CG15522-RA | 1101 | CG15522-RA | 389..907 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29928178..29928572 | 141..535 | 1975 | 100 | Plus |
3R | 32079331 | 3R | 29927995..29928122 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:17:18 has no hits.
BS13926.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for
BS13926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:45 Download gff for
BS13926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 383..918 | 7..550 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:02 Download gff for
BS13926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 383..918 | 7..550 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:02 Download gff for
BS13926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29927989..29928121 | 7..143 | 97 | -> | Plus |
3R | 29928181..29928583 | 144..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:45 Download gff for
BS13926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25753711..25753843 | 7..143 | 97 | -> | Plus |
arm_3R | 25753903..25754305 | 144..550 | 99 | | Plus |
BS13926.complete Sequence
555 bp assembled on 2012-04-25
GenBank Submission: KX801337
> BS13926.complete
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCCTAGAAGCTTTCTAG
ACCAT
BS13926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-RB | 522 | CG15522-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
CG15522-RA | 522 | CG15522-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-RB | 1381 | CG15522-RB | 669..1187 | 17..535 | 2595 | 100 | Plus |
CG15522-RA | 1101 | CG15522-RA | 389..907 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29928178..29928572 | 141..535 | 1975 | 100 | Plus |
3R | 32079331 | 3R | 29927995..29928122 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:10:03 has no hits.
BS13926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:05 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 386..921 | 7..550 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:27 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 392..913 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:06 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 389..910 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:01 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 392..913 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:33 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15522-RA | 389..910 | 17..539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:33 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29927995..29928121 | 17..143 | 100 | -> | Plus |
3R | 29928181..29928575 | 144..539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:06 Download gff for
BS13926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25753717..25753843 | 17..143 | 100 | -> | Plus |
arm_3R | 25753903..25754297 | 144..539 | 99 | | Plus |
BS13926.pep Sequence
Translation from 16 to 549
> BS13926.pep
MHQVLSYETAVRANSSREFREYVSKRTCASLVLTIGFFMLITGYLLGNFV
AERKYHIRQMTKDGGRSVKLSSAEYASLQELQSYQKAKDQLLLAAQELDK
LQQQDESERYLATSLNTEIFNRYISCTQDIPPNTNIAASQFTEQLIDNTV
ARQRHCLMIIQRVIDNHLANSQLLEAF*
BS13926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15522-PB | 173 | CG15522-PB | 1..173 | 1..173 | 868 | 100 | Plus |
CG15522-PA | 173 | CG15522-PA | 1..173 | 1..173 | 868 | 100 | Plus |