Clone BS13926 Report

Search the DGRC for BS13926

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG15522-RA
Protein status:BS13926.pep: Imported from assembly
Sequenced Size:555

Clone Sequence Records

BS13926.3prime Sequence

495 bp (492 high quality bases) assembled on 2006-10-13

> BS13926.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTGGCTGTTGGCCAGGTGGTTGTCGAT
GACCCGCTGGATGATCATCAAGCAGTGGCGCTGCCTGGCCACCGTGTTGT
CGATCAGCTGTTCCGTGAACTGACTGGCCGCAATGTTCGTGTTGGGCGGT
ATATCCTGCGTGCAGGATATGTACCTGTTGAAGATCTCCGTGTTCAGCGA
CGTGGCCAGATACCGCTCGCTCTCGTCCTGCTGCTGCAGCTTGTCCAGCT
CCTGGGCGGCCAGCAACAGCTGATCCTTGGCCTTCTGATATGATTGCAGC
TCCTGCAGGCTGGCATACTCGGCGCTGCTCAGTTTCACGGACCTGCCGCC
GTCTTTCGTCATCTGGCGAATGTGGTACTTGCGCTCGGCCACAAAATTAC
CGAGCAAGTATCCTGTTATCAGCATGAAGAAGCCAATCGTTAGCACCAGG
GAGGCACAGGTGCGCTTGGAAACGTACTCGCGGAACTCCCGAGAG

BS13926.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PA 522 CG15522-RA 45..519 495..21 2375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 713..1187 495..21 2375 100 Minus
CG15522-RA 1101 CG15522-RA 433..907 495..21 2375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 415..21 1975 100 Minus
3R 32079331 3R 29928039..29928122 495..412 420 100 Minus
Blast to na_te.dros performed on 2015-02-05 02:17:06 has no hits.

BS13926.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for BS13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 45..522 17..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:43 Download gff for BS13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 433..918 6..495 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:00 Download gff for BS13926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 433..918 6..495 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:00 Download gff for BS13926.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29928039..29928121 413..495 100 -> Minus
3R 29928181..29928583 6..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:43 Download gff for BS13926.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753761..25753843 413..495 100 -> Minus
arm_3R 25753903..25754305 6..412 99   Minus

BS13926.5prime Sequence

553 bp (518 high quality bases) assembled on 2006-10-13

> BS13926.5prime
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCCTAGAAGCTTTCTAG
ACC

BS13926.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PA 522 CG15522-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 669..1187 17..535 2595 100 Plus
CG15522-RA 1101 CG15522-RA 389..907 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 141..535 1975 100 Plus
3R 32079331 3R 29927995..29928122 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:17:18 has no hits.

BS13926.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for BS13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:45 Download gff for BS13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 7..550 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:02 Download gff for BS13926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 383..918 7..550 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:02 Download gff for BS13926.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29927989..29928121 7..143 97 -> Plus
3R 29928181..29928583 144..550 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:45 Download gff for BS13926.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753711..25753843 7..143 97 -> Plus
arm_3R 25753903..25754305 144..550 99   Plus

BS13926.complete Sequence

555 bp assembled on 2012-04-25

GenBank Submission: KX801337

> BS13926.complete
GAAGTTATCAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGC
GGGCCAACAGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGT
GCCTCCCTGGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTT
GCTCGGTAATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGA
AAGACGGCGGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTG
CAGGAGCTGCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGC
CCAGGAGCTGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGG
CCACGTCGCTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAG
GATATACCGCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCT
GATCGACAACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGC
GGGTCATCGACAACCACCTGGCCAACAGCCAGCTCCTAGAAGCTTTCTAG
ACCAT

BS13926.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 522 CG15522-PB 1..519 17..535 2595 100 Plus
CG15522-RA 522 CG15522-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-RB 1381 CG15522-RB 669..1187 17..535 2595 100 Plus
CG15522-RA 1101 CG15522-RA 389..907 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29928178..29928572 141..535 1975 100 Plus
3R 32079331 3R 29927995..29928122 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:10:03 has no hits.

BS13926.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:05 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 386..921 7..550 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:27 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 392..913 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:06 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 389..910 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:01 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 392..913 17..539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:33 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
CG15522-RA 389..910 17..539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:33 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29927995..29928121 17..143 100 -> Plus
3R 29928181..29928575 144..539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:06 Download gff for BS13926.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25753717..25753843 17..143 100 -> Plus
arm_3R 25753903..25754297 144..539 99   Plus

BS13926.pep Sequence

Translation from 16 to 549

> BS13926.pep
MHQVLSYETAVRANSSREFREYVSKRTCASLVLTIGFFMLITGYLLGNFV
AERKYHIRQMTKDGGRSVKLSSAEYASLQELQSYQKAKDQLLLAAQELDK
LQQQDESERYLATSLNTEIFNRYISCTQDIPPNTNIAASQFTEQLIDNTV
ARQRHCLMIIQRVIDNHLANSQLLEAF*

BS13926.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15522-PB 173 CG15522-PB 1..173 1..173 868 100 Plus
CG15522-PA 173 CG15522-PA 1..173 1..173 868 100 Plus