Clone Sequence Records
BS13927.3prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS13927.3prime
ATGGTCTAGAAAGCTTTTAGTTCCTGTTCACTTCTATGTGAAACTTGCAG
GCGGGTATGCTTTGCACTTCGGCCGTCACGGTGCTGTTAATGCCTAGATT
GCTGAGAGCTCCTCGCACCAGCCCGCACGTGAAGGCCACGAACTTGGGCG
CGTGCTCCAGCTGCTTGGTGCCCGGCGAGATGCGAGTCAGAAAGCGGAAA
GCCTTGTCCTGCACAACGTACATTCCGTGGTTGTTCGTCCTCAGGTTGTC
CACTTGCTTCTTGTATATAAGCATCCAGAAGTCGGTGCATATAAACTTCA
TAGTCTCCAACTCGTCCTTAAAACGCGAAACTTCACGGGTGAGCCGCTCA
ATCAGGCGGTAGCCGGTGGTGAAGCCTATATACTCCAAAGTGGCCAGGTC
GTGCTCCTTATTGCTATCCAGACAATAATTGACTATCTCTGCATGGAGGC
AATCGAAAAGGATTTCTTCAGACATGTCGACTGATAACT
BS13927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6196-PA | 459 | CG6196-RA | 1..459 | 475..17 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..534 | 475..17 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350394..15350785 | 17..408 | 1960 | 100 | Plus |
3R | 32079331 | 3R | 15350851..15350920 | 406..475 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:20:23 has no hits.
BS13927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for
BS13927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:15 Download gff for
BS13927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 66..534 | 17..485 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:53 Download gff for
BS13927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 66..534 | 17..485 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:53 Download gff for
BS13927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350394..15350783 | 17..406 | 100 | <- | Plus |
3R | 15350852..15350930 | 407..485 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:15 Download gff for
BS13927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176116..11176505 | 17..406 | 100 | <- | Plus |
arm_3R | 11176574..11176652 | 407..485 | 95 | | Plus |
BS13927.5prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS13927.5prime
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACTAAAAGCTTTCTAGACC
BS13927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6196-PA | 459 | CG6196-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..534 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350394..15350785 | 475..84 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 15350851..15350920 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:26 has no hits.
BS13927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for
BS13927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:41 Download gff for
BS13927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 66..534 | 7..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:31 Download gff for
BS13927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 66..534 | 7..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:31 Download gff for
BS13927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350394..15350783 | 86..475 | 100 | <- | Minus |
3R | 15350852..15350930 | 7..85 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:41 Download gff for
BS13927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176116..11176505 | 86..475 | 100 | <- | Minus |
arm_3R | 11176574..11176652 | 7..85 | 95 | | Minus |
BS13927.complete Sequence
491 bp assembled on 2006-11-01
> BS13927.complete
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACTAAAAGCTTTCTAGACCAT
BS13927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 459 | CG6196-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..534 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350394..15350785 | 475..84 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 15350851..15350920 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:46 has no hits.
BS13927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:11 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:50 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 90..558 | 7..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:16 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 76..532 | 17..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:11 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 90..558 | 7..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:05 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 76..532 | 17..473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:05 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350396..15350783 | 86..473 | 100 | <- | Minus |
3R | 15350852..15350920 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:16 Download gff for
BS13927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176118..11176505 | 86..473 | 100 | <- | Minus |
arm_3R | 11176574..11176642 | 17..85 | 100 | | Minus |
BS13927.pep Sequence
Translation from 16 to 474
> BS13927.pep
MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS
RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS
PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN
RN*
BS13927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-PA | 152 | CG6196-PA | 1..152 | 1..152 | 800 | 100 | Plus |