Clone BS13927 Report

Search the DGRC for BS13927

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptTrs33-RA
Protein status:BS13927.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13927.3prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS13927.3prime
ATGGTCTAGAAAGCTTTTAGTTCCTGTTCACTTCTATGTGAAACTTGCAG
GCGGGTATGCTTTGCACTTCGGCCGTCACGGTGCTGTTAATGCCTAGATT
GCTGAGAGCTCCTCGCACCAGCCCGCACGTGAAGGCCACGAACTTGGGCG
CGTGCTCCAGCTGCTTGGTGCCCGGCGAGATGCGAGTCAGAAAGCGGAAA
GCCTTGTCCTGCACAACGTACATTCCGTGGTTGTTCGTCCTCAGGTTGTC
CACTTGCTTCTTGTATATAAGCATCCAGAAGTCGGTGCATATAAACTTCA
TAGTCTCCAACTCGTCCTTAAAACGCGAAACTTCACGGGTGAGCCGCTCA
ATCAGGCGGTAGCCGGTGGTGAAGCCTATATACTCCAAAGTGGCCAGGTC
GTGCTCCTTATTGCTATCCAGACAATAATTGACTATCTCTGCATGGAGGC
AATCGAAAAGGATTTCTTCAGACATGTCGACTGATAACT

BS13927.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6196-PA 459 CG6196-RA 1..459 475..17 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..534 475..17 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350394..15350785 17..408 1960 100 Plus
3R 32079331 3R 15350851..15350920 406..475 350 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:20:23 has no hits.

BS13927.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for BS13927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 17..475 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:15 Download gff for BS13927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 66..534 17..485 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:53 Download gff for BS13927.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 66..534 17..485 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:53 Download gff for BS13927.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15350394..15350783 17..406 100 <- Plus
3R 15350852..15350930 407..485 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:15 Download gff for BS13927.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176116..11176505 17..406 100 <- Plus
arm_3R 11176574..11176652 407..485 95   Plus

BS13927.5prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS13927.5prime
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACTAAAAGCTTTCTAGACC

BS13927.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6196-PA 459 CG6196-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..534 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350394..15350785 475..84 1960 100 Minus
3R 32079331 3R 15350851..15350920 86..17 350 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:57:26 has no hits.

BS13927.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:46 Download gff for BS13927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:41 Download gff for BS13927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 66..534 7..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:31 Download gff for BS13927.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 66..534 7..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:31 Download gff for BS13927.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15350394..15350783 86..475 100 <- Minus
3R 15350852..15350930 7..85 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:41 Download gff for BS13927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176116..11176505 86..475 100 <- Minus
arm_3R 11176574..11176652 7..85 95   Minus

BS13927.complete Sequence

491 bp assembled on 2006-11-01

> BS13927.complete
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACTAAAAGCTTTCTAGACCAT

BS13927.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 459 CG6196-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..534 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350394..15350785 475..84 1960 100 Minus
3R 32079331 3R 15350851..15350920 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:40:46 has no hits.

BS13927.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:11 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:50 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 90..558 7..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:16 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 76..532 17..473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:11 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 90..558 7..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:05 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 76..532 17..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:05 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15350396..15350783 86..473 100 <- Minus
3R 15350852..15350920 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:16 Download gff for BS13927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176118..11176505 86..473 100 <- Minus
arm_3R 11176574..11176642 17..85 100   Minus

BS13927.pep Sequence

Translation from 16 to 474

> BS13927.pep
MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS
RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS
PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN
RN*

BS13927.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-PA 152 CG6196-PA 1..152 1..152 800 100 Plus