Clone BS13928 Report

Search the DGRC for BS13928

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptste14-RA
Protein status:BS13928.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13928.3prime Sequence

614 bp (526 high quality bases) assembled on 2006-10-13

> BS13928.3prime
ATGGTCTAGAAAGCTTCTAATCGACCAGATAGCCCCGGATGAAGGGCAGG
CCCGTTGGCACCCGCTTTTGATAGCGCACATAGTCCGACTGGAAGAAGTT
GAGCAGGGAGTACTCCTCGACGTAGATGCGATCGTGGAAGAACAGCCAGC
TGACCAGTGTGTAAATGCATATGCAGATGGGATTCAATAGCACGATCTGG
GTTCCGATGGACCACCAGAACCAGCCGACATAAGACGGGTGGCGGCAGTA
GGCGTAGATCCCGCTTGTTATTAGCTTGTGTTCCGAGTGTTTCTCATTCT
GGACCAAGTGAGTGAAGCTCCGGCCAGCTGTGATGATGGCTGCCTTGCGA
ACCATCTCGCCCAGCAGGCACAGGACCACGCCCGCCACCCAAATGTATCC
GTATCTCTTGAACTGCGGCAGGTAGTACACCTCTAGTGAGAACTCGATCC
AACTGGCTGCCGCCGCCAGTCCATAGTGCACAGAGTGGTTCAGCATAAAG
GAGTCGAGACTGAGAGTGCGCGGATTGGCAAAGGCGATAACGAGGAACTC
CGAGTAGTGGAAAAGGGACATGAAGCATCCGTAGGCGCCAAATTGCTGCC
ACTCGGTGGGGAGC

BS13928.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11268-PA 900 CG11268-RA 307..900 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 422..1015 610..17 2970 100 Minus
ste14-RA 1227 CG11268-RA 422..1015 610..17 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018754..13019061 610..303 1540 100 Minus
3L 28110227 3L 13019187..13019475 305..17 1445 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:58:58 has no hits.

BS13928.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:47 Download gff for BS13928.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 304..900 17..614 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:44 Download gff for BS13928.3prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 419..1022 8..614 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:13 Download gff for BS13928.3prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 419..1022 8..614 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:13 Download gff for BS13928.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13018751..13019059 305..614 99 -> Minus
3L 13019188..13019482 8..304 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:44 Download gff for BS13928.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011851..13012159 305..614 99 -> Minus
arm_3L 13012288..13012582 8..304 98   Minus

BS13928.5prime Sequence

523 bp (498 high quality bases) assembled on 2006-10-13

> BS13928.5prime
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTC

BS13928.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11268-PA 900 CG11268-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 116..622 17..523 2535 100 Plus
ste14-RA 1227 CG11268-RA 116..622 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018685..13018954 254..523 1350 100 Plus
3L 28110227 3L 13018381..13018623 17..259 1215 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:14:29 has no hits.

BS13928.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:47 Download gff for BS13928.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:32 Download gff for BS13928.5prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 111..622 9..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:45 Download gff for BS13928.5prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 111..622 9..523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:45 Download gff for BS13928.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13018376..13018620 9..256 98 -> Plus
3L 13018688..13018954 257..523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:32 Download gff for BS13928.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011476..13011720 9..256 98 -> Plus
arm_3L 13011788..13012054 257..523 100   Plus

BS13928.complete Sequence

932 bp assembled on 2006-11-01

GenBank Submission: FJ637556

> BS13928.complete
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGAACCCAGATCGTGCTATTGAA
TCCCATCTGCATATGCATTTACACACTGGTCAGCTGGCTGTTCTTCCACG
ATCGCATCTACGTCGAGGAGTACTCCCTGCTCAACTTCTTCCAGTCGGAC
TATGTGCGCTATCAAAAGCGGGTGCCAACGGGCCTGCCCTTCATCCGGGG
CTATCTGGTCGATTAGAAGCTTTCTAGACCAT

BS13928.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 900 CG11268-PB 1..900 17..916 4500 100 Plus
ste14-RA 900 CG11268-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 116..1015 17..916 4500 100 Plus
ste14-RA 1227 CG11268-RA 116..1015 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018685..13019061 254..630 1885 100 Plus
3L 28110227 3L 13019187..13019475 628..916 1445 100 Plus
3L 28110227 3L 13018381..13018623 17..259 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:58:55 has no hits.

BS13928.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:27 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:46 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 126..1037 9..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:21 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 116..1015 17..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:41 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 116..1015 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:41 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13018381..13018620 17..256 100 -> Plus
3L 13018688..13019059 257..628 100 -> Plus
3L 13019188..13019475 629..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:21 Download gff for BS13928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011788..13012159 257..628 100 -> Plus
arm_3L 13011481..13011720 17..256 100 -> Plus
arm_3L 13012288..13012575 629..916 100   Plus

BS13928.pep Sequence

Translation from 16 to 915

> BS13928.pep
MCAKSRVASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQ
VWGAVLWGPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVIC
FAPTEWQQFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGL
AAAASWIEFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRS
FTHLVQNEKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICIC
IYTLVSWLFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVD*

BS13928.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-PB 299 CG11268-PB 1..299 1..299 1603 100 Plus
ste14-PA 299 CG11268-PA 1..299 1..299 1603 100 Plus