Clone Sequence Records
BS13928.3prime Sequence
614 bp (526 high quality bases) assembled on 2006-10-13
> BS13928.3prime
ATGGTCTAGAAAGCTTCTAATCGACCAGATAGCCCCGGATGAAGGGCAGG
CCCGTTGGCACCCGCTTTTGATAGCGCACATAGTCCGACTGGAAGAAGTT
GAGCAGGGAGTACTCCTCGACGTAGATGCGATCGTGGAAGAACAGCCAGC
TGACCAGTGTGTAAATGCATATGCAGATGGGATTCAATAGCACGATCTGG
GTTCCGATGGACCACCAGAACCAGCCGACATAAGACGGGTGGCGGCAGTA
GGCGTAGATCCCGCTTGTTATTAGCTTGTGTTCCGAGTGTTTCTCATTCT
GGACCAAGTGAGTGAAGCTCCGGCCAGCTGTGATGATGGCTGCCTTGCGA
ACCATCTCGCCCAGCAGGCACAGGACCACGCCCGCCACCCAAATGTATCC
GTATCTCTTGAACTGCGGCAGGTAGTACACCTCTAGTGAGAACTCGATCC
AACTGGCTGCCGCCGCCAGTCCATAGTGCACAGAGTGGTTCAGCATAAAG
GAGTCGAGACTGAGAGTGCGCGGATTGGCAAAGGCGATAACGAGGAACTC
CGAGTAGTGGAAAAGGGACATGAAGCATCCGTAGGCGCCAAATTGCTGCC
ACTCGGTGGGGAGC
BS13928.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11268-PA | 900 | CG11268-RA | 307..900 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 422..1015 | 610..17 | 2970 | 100 | Minus |
ste14-RA | 1227 | CG11268-RA | 422..1015 | 610..17 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018754..13019061 | 610..303 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 13019187..13019475 | 305..17 | 1445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:58:58 has no hits.
BS13928.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:47 Download gff for
BS13928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 304..900 | 17..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:44 Download gff for
BS13928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 419..1022 | 8..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:13 Download gff for
BS13928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 419..1022 | 8..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:13 Download gff for
BS13928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13018751..13019059 | 305..614 | 99 | -> | Minus |
3L | 13019188..13019482 | 8..304 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:44 Download gff for
BS13928.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011851..13012159 | 305..614 | 99 | -> | Minus |
arm_3L | 13012288..13012582 | 8..304 | 98 | | Minus |
BS13928.5prime Sequence
523 bp (498 high quality bases) assembled on 2006-10-13
> BS13928.5prime
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTC
BS13928.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11268-PA | 900 | CG11268-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 116..622 | 17..523 | 2535 | 100 | Plus |
ste14-RA | 1227 | CG11268-RA | 116..622 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018685..13018954 | 254..523 | 1350 | 100 | Plus |
3L | 28110227 | 3L | 13018381..13018623 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:14:29 has no hits.
BS13928.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:47 Download gff for
BS13928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:32 Download gff for
BS13928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 111..622 | 9..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:45 Download gff for
BS13928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 111..622 | 9..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:45 Download gff for
BS13928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13018376..13018620 | 9..256 | 98 | -> | Plus |
3L | 13018688..13018954 | 257..523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:32 Download gff for
BS13928.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011476..13011720 | 9..256 | 98 | -> | Plus |
arm_3L | 13011788..13012054 | 257..523 | 100 | | Plus |
BS13928.complete Sequence
932 bp assembled on 2006-11-01
GenBank Submission: FJ637556
> BS13928.complete
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGAACCCAGATCGTGCTATTGAA
TCCCATCTGCATATGCATTTACACACTGGTCAGCTGGCTGTTCTTCCACG
ATCGCATCTACGTCGAGGAGTACTCCCTGCTCAACTTCTTCCAGTCGGAC
TATGTGCGCTATCAAAAGCGGGTGCCAACGGGCCTGCCCTTCATCCGGGG
CTATCTGGTCGATTAGAAGCTTTCTAGACCAT
BS13928.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 900 | CG11268-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
ste14-RA | 900 | CG11268-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 116..1015 | 17..916 | 4500 | 100 | Plus |
ste14-RA | 1227 | CG11268-RA | 116..1015 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018685..13019061 | 254..630 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 13019187..13019475 | 628..916 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 13018381..13018623 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:58:55 has no hits.
BS13928.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:27 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:46 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-RA | 126..1037 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:21 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 116..1015 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:41 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 116..1015 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:41 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13018381..13018620 | 17..256 | 100 | -> | Plus |
3L | 13018688..13019059 | 257..628 | 100 | -> | Plus |
3L | 13019188..13019475 | 629..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:21 Download gff for
BS13928.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011788..13012159 | 257..628 | 100 | -> | Plus |
arm_3L | 13011481..13011720 | 17..256 | 100 | -> | Plus |
arm_3L | 13012288..13012575 | 629..916 | 100 | | Plus |
BS13928.pep Sequence
Translation from 16 to 915
> BS13928.pep
MCAKSRVASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQ
VWGAVLWGPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVIC
FAPTEWQQFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGL
AAAASWIEFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRS
FTHLVQNEKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICIC
IYTLVSWLFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVD*
BS13928.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-PB | 299 | CG11268-PB | 1..299 | 1..299 | 1603 | 100 | Plus |
ste14-PA | 299 | CG11268-PA | 1..299 | 1..299 | 1603 | 100 | Plus |