Clone Sequence Records
BS13934.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13934.3prime
ATGGTCTAGAAAGCTTTTACATTCCATTCGCCTGGCTCATTTGGTGGTGA
ATGAATGACATGGTGTATCCAATCGAACGCCTAACGCAGTGCACGTCCAT
CTGGCCATCCAAGATGCACTGCCTCAACTGATTGACGGCGTAGTTCTCGA
TCCGTTTCTTGGTACTCTCGTTGTCAATTCGTTCCAGTCGCTTATCCACC
TTGTGCATTAGAATGAATGCCTCTGGGAAGTGACCCACATCACAGGGCCA
GTTGACAGAGTGCGGATGCGGGTGGCTTAGACTTGGACCTTGGGACGAGT
TGTCCTCCTCAGACCAACGAATATTCCTGGCCTGCACCAAAGCCAGAGCC
GAAAGAAGTAGAATCACCAGAGTTGAGTTCATGTCGACTGATAACT
BS13934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17820-PA | 366 | fit-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fit-RA | 531 | CG17820-RA | 24..389 | 382..17 | 1830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21884066..21884431 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:21:04 has no hits.
BS13934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:50 Download gff for
BS13934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17820-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:17 Download gff for
BS13934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 12..396 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:56 Download gff for
BS13934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 12..396 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:56 Download gff for
BS13934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21884063..21884444 | 12..396 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:17 Download gff for
BS13934.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17709785..17710166 | 12..396 | 98 | | Plus |
BS13934.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS13934.5prime
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGTAAAAGCTTTCTAGACC
BS13934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17820-PA | 366 | fit-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fit-RA | 531 | CG17820-RA | 24..389 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21884066..21884431 | 382..17 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:41 has no hits.
BS13934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:51 Download gff for
BS13934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17820-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:38 Download gff for
BS13934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 3..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:29 Download gff for
BS13934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 3..387 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:29 Download gff for
BS13934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21884063..21884444 | 3..387 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:38 Download gff for
BS13934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17709785..17710166 | 3..387 | 98 | | Minus |
BS13934.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ637557
> BS13934.complete
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGTAAAAGCTTTCTAGACCAT
BS13934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fit-RA | 366 | CG17820-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fit-RA | 531 | CG17820-RA | 24..389 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21884066..21884431 | 382..17 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:34 has no hits.
BS13934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:41:02 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:54 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 3..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:23 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 24..387 | 17..380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:41:03 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 11..392 | 3..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:00 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fit-RA | 24..387 | 17..380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:00 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21884068..21884431 | 17..380 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:23 Download gff for
BS13934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17709790..17710153 | 17..380 | 100 | | Minus |
BS13934.pep Sequence
Translation from 16 to 381
> BS13934.pep
MNSTLVILLLSALALVQARNIRWSEEDNSSQGPSLSHPHPHSVNWPCDVG
HFPEAFILMHKVDKRLERIDNESTKKRIENYAVNQLRQCILDGQMDVHCV
RRSIGYTMSFIHHQMSQANGM*
BS13934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fit-PA | 121 | CG17820-PA | 1..121 | 1..121 | 644 | 100 | Plus |
