Clone BS13940 Report

Search the DGRC for BS13940

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptKFase-RA
Protein status:BS13940.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13940.3prime Sequence

667 bp (526 high quality bases) assembled on 2006-10-13

> BS13940.3prime
ATGGTCTAGAAAGCTTTTATTCAATTTCAATGTTGCGCAGAAAGCGGGAT
ACATCCGAATCGTCGATGGCCGTCTCCTCGATGATGTCGAAGTGGTCGTA
CCCTTTGAAGAGCGTAAAGCTCGCCTTGTAGCCCTTCTTTCTCAGCACAT
CAGCGTAGTGGCGACTTTGCTCGATGAAGGTGGTGCTGTCATGCTCGGCG
GCCACCACGTAGATCTTGGTGGAGTTCCAAACGGTAACATCGGTGTATTC
CCACAGCATGGGCGACACGGACTCGATATTCCGCTCGTTGAGGCCCAGAA
TATTTTTGGGATTAACCGATTCCAAGTTAGAGAGCTCCCTCAGATCGTAA
ACGCCGCAGAGGAAGATCAAAGCCCACACCATCTTGCTCCGCTGGGCTGT
AATCACATTTGGGCGCATGAGTATCTGGGCCAGCAAGTGGGCACCAGCCG
AGTGTCCGGCGAAGGTGAGCGACGACACTTTGGTCATTTCGGTGTAGTCA
AAGATCCAGTTGAGGAAATGGGTGAACTGGGTCATCAGCTGCTCGAGGGT
GACCTGCGGGCACAGGTTGTAGTCCATGACGGCCACTCGGTATCCACGCC
GCACCAGGGGACCCACAATCGAGCAGGACATGCTCATGTCCATCTCCTGC
CAGTAGCCGCCGTGCAC

BS13940.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9542-PA 903 CG9542-RA 253..903 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 458..1109 667..16 3260 100 Minus
KFase-RA 1002 CG9542-RA 317..968 667..16 3260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487596..6488247 16..667 3260 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:59:36 has no hits.

BS13940.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for BS13940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 253..903 17..667 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:51 Download gff for BS13940.3prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 317..970 12..667 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:18 Download gff for BS13940.3prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 317..970 12..667 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:18 Download gff for BS13940.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6487594..6488247 12..667 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:51 Download gff for BS13940.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6487594..6488247 12..667 99   Plus

BS13940.5prime Sequence

594 bp (546 high quality bases) assembled on 2006-10-13

> BS13940.5prime
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCT

BS13940.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9542-PA 903 CG9542-RA 1..578 17..594 2890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 206..783 17..594 2890 100 Plus
KFase-RA 1002 CG9542-RA 65..642 17..594 2890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487922..6488372 594..144 2255 100 Minus
2L 23513712 2L 6488425..6488551 143..17 635 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:37:51 has no hits.

BS13940.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for BS13940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 1..578 17..594 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:40 Download gff for BS13940.5prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 56..642 5..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:59 Download gff for BS13940.5prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 56..642 5..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:59 Download gff for BS13940.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6487922..6488372 144..594 100 <- Minus
2L 6488425..6488556 13..143 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:40 Download gff for BS13940.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6487922..6488372 144..594 100 <- Minus
arm_2L 6488425..6488556 13..143 97 -> Minus

BS13940.complete Sequence

935 bp assembled on 2006-11-01

GenBank Submission: FJ637558

> BS13940.complete
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGGCTACAAGGCGAGCTTTACGCTCTTCAAAGGGTACGACCACTTCGAC
ATCATCGAGGAGACGGCCATCGACGATTCGGATGTATCCCGCTTTCTGCG
CAACATTGAAATTGAATAAAAGCTTTCTAGACCAT

BS13940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 903 CG9542-PB 1..903 17..919 4515 100 Plus
KFase-RA 903 CG9542-PA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 206..1109 17..920 4520 100 Plus
KFase-RA 1002 CG9542-RA 65..968 17..920 4520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487596..6488372 920..144 3885 100 Minus
2L 23513712 2L 6488425..6488551 143..17 635 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:16:05 has no hits.

BS13940.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:43 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:41 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 65..965 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:23 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 65..965 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:43 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 56..970 5..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:22 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 65..965 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:22 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6487599..6488372 144..917 100 <- Minus
2L 6488425..6488551 17..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:23 Download gff for BS13940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6488425..6488551 17..143 100   Minus
arm_2L 6487599..6488372 144..917 100 <- Minus

BS13940.pep Sequence

Translation from 16 to 918

> BS13940.pep
MYNPRCKDLDRDYFPSYHTTRFQDQPEPNLAVLEHFVRVTKQHGRELTEK
QGITVDHLRYGEGRQLVDVFYSEKTTNQAPLFVFVHGGYWQEMDMSMSCS
IVGPLVRRGYRVAVMDYNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSS
LTFAGHSAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLE
SVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIE
QSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRNIEIE
*

BS13940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-PB 300 CG9542-PB 1..300 1..300 1590 100 Plus
KFase-PA 300 CG9542-PA 1..300 1..300 1590 100 Plus