Clone Sequence Records
BS13940.3prime Sequence
667 bp (526 high quality bases) assembled on 2006-10-13
> BS13940.3prime
ATGGTCTAGAAAGCTTTTATTCAATTTCAATGTTGCGCAGAAAGCGGGAT
ACATCCGAATCGTCGATGGCCGTCTCCTCGATGATGTCGAAGTGGTCGTA
CCCTTTGAAGAGCGTAAAGCTCGCCTTGTAGCCCTTCTTTCTCAGCACAT
CAGCGTAGTGGCGACTTTGCTCGATGAAGGTGGTGCTGTCATGCTCGGCG
GCCACCACGTAGATCTTGGTGGAGTTCCAAACGGTAACATCGGTGTATTC
CCACAGCATGGGCGACACGGACTCGATATTCCGCTCGTTGAGGCCCAGAA
TATTTTTGGGATTAACCGATTCCAAGTTAGAGAGCTCCCTCAGATCGTAA
ACGCCGCAGAGGAAGATCAAAGCCCACACCATCTTGCTCCGCTGGGCTGT
AATCACATTTGGGCGCATGAGTATCTGGGCCAGCAAGTGGGCACCAGCCG
AGTGTCCGGCGAAGGTGAGCGACGACACTTTGGTCATTTCGGTGTAGTCA
AAGATCCAGTTGAGGAAATGGGTGAACTGGGTCATCAGCTGCTCGAGGGT
GACCTGCGGGCACAGGTTGTAGTCCATGACGGCCACTCGGTATCCACGCC
GCACCAGGGGACCCACAATCGAGCAGGACATGCTCATGTCCATCTCCTGC
CAGTAGCCGCCGTGCAC
BS13940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9542-PA | 903 | CG9542-RA | 253..903 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 458..1109 | 667..16 | 3260 | 100 | Minus |
KFase-RA | 1002 | CG9542-RA | 317..968 | 667..16 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487596..6488247 | 16..667 | 3260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:59:36 has no hits.
BS13940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for
BS13940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 253..903 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:51 Download gff for
BS13940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 317..970 | 12..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:18 Download gff for
BS13940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 317..970 | 12..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:18 Download gff for
BS13940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487594..6488247 | 12..667 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:51 Download gff for
BS13940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6487594..6488247 | 12..667 | 99 | | Plus |
BS13940.5prime Sequence
594 bp (546 high quality bases) assembled on 2006-10-13
> BS13940.5prime
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCT
BS13940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9542-PA | 903 | CG9542-RA | 1..578 | 17..594 | 2890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 206..783 | 17..594 | 2890 | 100 | Plus |
KFase-RA | 1002 | CG9542-RA | 65..642 | 17..594 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487922..6488372 | 594..144 | 2255 | 100 | Minus |
2L | 23513712 | 2L | 6488425..6488551 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:37:51 has no hits.
BS13940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for
BS13940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 1..578 | 17..594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:40 Download gff for
BS13940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 56..642 | 5..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:59 Download gff for
BS13940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 56..642 | 5..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:59 Download gff for
BS13940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487922..6488372 | 144..594 | 100 | <- | Minus |
2L | 6488425..6488556 | 13..143 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:40 Download gff for
BS13940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6487922..6488372 | 144..594 | 100 | <- | Minus |
arm_2L | 6488425..6488556 | 13..143 | 97 | -> | Minus |
BS13940.complete Sequence
935 bp assembled on 2006-11-01
GenBank Submission: FJ637558
> BS13940.complete
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGGCTACAAGGCGAGCTTTACGCTCTTCAAAGGGTACGACCACTTCGAC
ATCATCGAGGAGACGGCCATCGACGATTCGGATGTATCCCGCTTTCTGCG
CAACATTGAAATTGAATAAAAGCTTTCTAGACCAT
BS13940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 903 | CG9542-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
KFase-RA | 903 | CG9542-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 206..1109 | 17..920 | 4520 | 100 | Plus |
KFase-RA | 1002 | CG9542-RA | 65..968 | 17..920 | 4520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487596..6488372 | 920..144 | 3885 | 100 | Minus |
2L | 23513712 | 2L | 6488425..6488551 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:16:05 has no hits.
BS13940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:43 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:41 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 65..965 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:23 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 65..965 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:43 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 56..970 | 5..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:22 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 65..965 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:22 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487599..6488372 | 144..917 | 100 | <- | Minus |
2L | 6488425..6488551 | 17..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:23 Download gff for
BS13940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6488425..6488551 | 17..143 | 100 | | Minus |
arm_2L | 6487599..6488372 | 144..917 | 100 | <- | Minus |
BS13940.pep Sequence
Translation from 16 to 918
> BS13940.pep
MYNPRCKDLDRDYFPSYHTTRFQDQPEPNLAVLEHFVRVTKQHGRELTEK
QGITVDHLRYGEGRQLVDVFYSEKTTNQAPLFVFVHGGYWQEMDMSMSCS
IVGPLVRRGYRVAVMDYNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSS
LTFAGHSAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLE
SVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIE
QSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRNIEIE
*
BS13940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-PB | 300 | CG9542-PB | 1..300 | 1..300 | 1590 | 100 | Plus |
KFase-PA | 300 | CG9542-PA | 1..300 | 1..300 | 1590 | 100 | Plus |