Clone BS13941 Report

Search the DGRC for BS13941

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptJon25Biii-RA
Protein status:BS13941.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13941.3prime Sequence

504 bp (503 high quality bases) assembled on 2006-10-13

> BS13941.3prime
ATGGTCTAGAAAGCTTTTAGTAAGAGATGCCAGTGTGGTCACGGATCCAG
TCCAAGTGGTAGGTGACGCGCTGGAATCCAGCAGGAGCACCCGACTGGCA
GCCGTTGGAGGAGACGAAGTTGCTAACTCCCACCAGCTTGGAGCCGTCGT
GTGTGACAAGGGGACCGCCAGAGTCACCTCCGCAAATGGACTTGCCGTCG
ACGGTGCGGGTGCAGATGACGTTGTCGCCAACGCTGCCGTAGGTCCAGCC
GCACTCTTCGTTGTGGACGATCTGGAGATCGACGCACTGCAGCCAGTCGG
GCAGTGGGCTGCCGTCGTAGGTGCCACCCCATCCGCAAGCGACGGCCCAC
CATTCGTTGTAGTTGTTGTAACGGTCGTTGTAGCTGGGGAGCTCCACCTT
GTTCACCATGTGCCAGAAGTCGACGTGGGGGATGCGGATCAGGGCGATAT
CAGCGTTGGAATGCTTGATGAAGTTGCCGTTGCCAACGGTGTGGGTGAAC
TGGG

BS13941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8871-PA 777 Jon25Biii-RA 290..777 504..17 2440 100 Minus
CG7118-PA 783 Jon66Ci-RA 337..531 454..260 525 90.7 Minus
CG7170-PA 789 Jon66Cii-RA 352..543 451..260 510 90.6 Minus
CG7170-PA 789 Jon66Cii-RA 699..758 104..45 225 95 Minus
CG31034-PA 798 Jon99Cii-RA 465..549 353..269 225 90.5 Minus
CG31362-PA 798 Jon99Ciii-RA 465..549 353..269 225 90.5 Minus
CG8867-PA 801 Jon25Bi-RA 370..454 448..364 225 90.5 Minus
CG8867-PB 801 Jon25Bi-RB 370..454 448..364 225 90.5 Minus
CG2229-PA 804 Jon99Fii-RA 380..452 444..372 215 91.7 Minus
CG18030-PA 804 Jon99Fi-RA 397..452 427..372 205 94.6 Minus
CG2229-PA 804 Jon99Fii-RA 471..533 353..291 190 92 Minus
CG18030-PA 804 Jon99Fi-RA 471..533 353..291 190 92 Minus
CG7118-PA 783 Jon66Ci-RA 715..770 82..27 180 92.8 Minus
CG8869-PA 831 Jon25Bii-RA 794..831 54..17 140 94.7 Minus
CG18180-PA 795 CG18180-RA 518..549 300..269 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 309..796 504..17 2440 100 Minus
Jon66Cii-RA 830 CG7170-RA 302..788 504..18 1220 83.6 Minus
Jon66Ci-RA 838 CG7118-RA 305..797 504..18 1030 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4949972..4950459 17..504 2440 100 Plus
3L 28110227 3L 8392862..8393348 18..504 1220 83.4 Plus
3L 28110227 3L 8391844..8392336 504..18 1005 80.7 Minus
3R 32079331 3R 30487094..30487528 11..448 715 78.1 Plus
2L 23513712 2L 4954633..4954754 327..448 355 86.1 Plus
2L 23513712 2L 4952284..4952494 17..227 350 77.7 Plus
3L 28110227 3L 9641508..9641703 344..146 285 77.4 Minus
3L 28110227 3L 6052754..6052858 448..344 270 83.8 Minus
3L 28110227 3L 6053956..6054059 345..448 235 81.7 Plus
3L 28110227 3L 6053626..6053682 15..71 180 87.7 Plus
3L 28110227 3L 9639814..9639972 304..146 180 74.2 Minus
Blast to na_te.dros performed on 2015-01-30 17:55:44 has no hits.

BS13941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for BS13941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 290..777 17..504 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:03 Download gff for BS13941.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 309..804 7..504 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:31 Download gff for BS13941.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 309..804 7..504 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:31 Download gff for BS13941.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4949964..4950459 7..504 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:03 Download gff for BS13941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4949964..4950459 7..504 99   Plus

BS13941.5prime Sequence

491 bp (460 high quality bases) assembled on 2006-10-13

> BS13941.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCT

BS13941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8871-PA 777 Jon25Biii-RA 1..475 17..491 2375 100 Plus
CG7118-PA 783 Jon66Ci-RA 337..472 356..491 355 90.4 Plus
CG7170-PA 789 Jon66Cii-RA 352..484 359..491 340 90.2 Plus
CG7118-PA 783 Jon66Ci-RA 133..241 149..257 270 89.9 Plus
CG7170-PA 789 Jon66Cii-RA 142..254 149..261 265 89.3 Plus
CG8867-PA 801 Jon25Bi-RA 370..454 362..446 225 90.5 Plus
CG8867-PB 801 Jon25Bi-RB 370..454 362..446 225 90.5 Plus
CG2229-PA 804 Jon99Fii-RA 380..452 366..438 215 91.7 Plus
CG8867-PA 801 Jon25Bi-RA 277..333 287..343 210 94.7 Plus
CG8867-PB 801 Jon25Bi-RB 277..333 287..343 210 94.7 Plus
CG18030-PA 804 Jon99Fi-RA 397..452 383..438 205 94.6 Plus
CG7170-PA 789 Jon66Cii-RA 271..312 278..319 185 97.6 Plus
CG8867-PA 801 Jon25Bi-RA 181..230 191..240 175 94 Plus
CG8867-PB 801 Jon25Bi-RB 181..230 191..240 175 94 Plus
CG7118-PA 783 Jon66Ci-RA 259..300 278..319 160 95.2 Plus
CG8867-PA 801 Jon25Bi-RA 132..173 148..189 135 92.8 Plus
CG8867-PB 801 Jon25Bi-RB 132..173 148..189 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 19..494 16..491 2380 100 Plus
Jon66Ci-RA 838 CG7118-RA 17..490 15..491 1110 82.7 Plus
Jon66Cii-RA 830 CG7170-RA 113..487 117..491 1095 86.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4950274..4950749 491..16 2380 100 Minus
3L 28110227 3L 8393163..8393537 491..117 1095 86.1 Minus
3L 28110227 3L 8391556..8392029 15..491 1060 82 Plus
2L 23513712 2L 4954633..4955051 483..89 615 77.6 Minus
3R 32079331 3R 30487399..30487528 491..362 380 86.2 Minus
3L 28110227 3L 6052754..6052858 362..466 270 83.8 Plus
3L 28110227 3L 6053956..6054059 465..362 235 81.7 Minus
Blast to na_te.dros performed on 2015-02-02 18:21:30 has no hits.

BS13941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:55 Download gff for BS13941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 1..475 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:19 Download gff for BS13941.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 13..494 9..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:00 Download gff for BS13941.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 13..494 9..491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:00 Download gff for BS13941.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4950274..4950755 9..491 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:19 Download gff for BS13941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4950274..4950755 9..491 99   Minus

BS13941.complete Sequence

809 bp assembled on 2006-11-01

GenBank Submission: FJ637559

> BS13941.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCTACGACGGCA
GCCCACTGCCCGACTGGCTGCAGTGCGTCGATCTCCAGATCGTCCACAAC
GAAGAGTGCGGCTGGACCTACGGCAGCGTTGGCGACAACGTCATCTGCAC
CCGCACCGTCGACGGCAAGTCCATTTGCGGAGGTGACTCTGGCGGTCCCC
TTGTCACACACGACGGCTCCAAGCTGGTGGGAGTTAGCAACTTCGTCTCC
TCCAACGGCTGCCAGTCGGGTGCTCCTGCTGGATTCCAGCGCGTCACCTA
CCACTTGGACTGGATCCGTGACCACACTGGCATCTCTTACTAAAAGCTTT
CTAGACCAT

BS13941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 777 CG8871-PA 1..777 17..793 3885 100 Plus
Jon66Cii-RA 789 CG7170-PA 110..785 117..792 1730 83.7 Plus
Jon66Ci-RA 783 CG7118-PA 1..779 17..792 1530 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 19..796 16..793 3890 100 Plus
Jon66Cii-RA 830 CG7170-RA 113..788 117..792 1730 83.7 Plus
Jon66Ci-RA 838 CG7118-RA 17..797 15..792 1540 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4949972..4950749 793..16 3890 100 Minus
3L 28110227 3L 8392862..8393537 792..117 1730 83.7 Minus
3L 28110227 3L 8391556..8392336 15..792 1540 80.4 Plus
3R 32079331 3R 30487094..30487528 799..362 715 78.1 Minus
3R 32079331 3R 30489363..30489791 362..793 685 77.8 Plus
3R 32079331 3R 29923790..29924218 793..362 655 77.3 Minus
3R 32079331 3R 29922611..29923039 362..793 640 77.1 Plus
2L 23513712 2L 4954633..4955051 483..89 615 77.6 Minus
2L 23513712 2L 4952284..4952494 793..583 350 77.7 Minus
2R 25286936 2R 8691847..8691969 362..484 315 83.7 Plus
3L 28110227 3L 9641508..9641703 466..664 285 77.4 Plus
3L 28110227 3L 6052754..6052858 362..466 270 83.8 Plus
3L 28110227 3L 6053956..6054059 465..362 235 81.7 Minus
Blast to na_te.dros performed on 2014-11-28 00:04:46 has no hits.

BS13941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:44 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:06 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 9..800 9..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:19 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 20..794 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:44 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 9..800 9..803 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:54 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 20..794 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:54 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4949974..4950748 17..791 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:19 Download gff for BS13941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4949974..4950748 17..791 100   Minus

BS13941.pep Sequence

Translation from 16 to 792

> BS13941.pep
MKVFLAILALAVASASAFDEKVFVKDLPKATKIEGRITNGYAAPEGKAPY
TVGLGFSGGWWCGGSIIAHDWVLTAEHCIGDAASVIVYFGATWRTNAQFT
HTVGNGNFIKHSNADIALIRIPHVDFWHMVNKVELPSYNDRYNNYNEWWA
VACGWGGTYDGSPLPDWLQCVDLQIVHNEECGWTYGSVGDNVICTRTVDG
KSICGGDSGGPLVTHDGSKLVGVSNFVSSNGCQSGAPAGFQRVTYHLDWI
RDHTGISY*

BS13941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-PA 258 CG8871-PA 1..258 1..258 1435 100 Plus
Jon66Cii-PA 262 CG7170-PA 1..261 1..258 1192 83.5 Plus
Jon66Ci-PA 260 CG7118-PA 1..259 1..258 1179 82.3 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..258 951 66.7 Plus
Jon99Fi-PA 267 CG18030-PA 4..267 5..258 873 63.4 Plus