Clone Sequence Records
BS13941.3prime Sequence
504 bp (503 high quality bases) assembled on 2006-10-13
> BS13941.3prime
ATGGTCTAGAAAGCTTTTAGTAAGAGATGCCAGTGTGGTCACGGATCCAG
TCCAAGTGGTAGGTGACGCGCTGGAATCCAGCAGGAGCACCCGACTGGCA
GCCGTTGGAGGAGACGAAGTTGCTAACTCCCACCAGCTTGGAGCCGTCGT
GTGTGACAAGGGGACCGCCAGAGTCACCTCCGCAAATGGACTTGCCGTCG
ACGGTGCGGGTGCAGATGACGTTGTCGCCAACGCTGCCGTAGGTCCAGCC
GCACTCTTCGTTGTGGACGATCTGGAGATCGACGCACTGCAGCCAGTCGG
GCAGTGGGCTGCCGTCGTAGGTGCCACCCCATCCGCAAGCGACGGCCCAC
CATTCGTTGTAGTTGTTGTAACGGTCGTTGTAGCTGGGGAGCTCCACCTT
GTTCACCATGTGCCAGAAGTCGACGTGGGGGATGCGGATCAGGGCGATAT
CAGCGTTGGAATGCTTGATGAAGTTGCCGTTGCCAACGGTGTGGGTGAAC
TGGG
BS13941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8871-PA | 777 | Jon25Biii-RA | 290..777 | 504..17 | 2440 | 100 | Minus |
CG7118-PA | 783 | Jon66Ci-RA | 337..531 | 454..260 | 525 | 90.7 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 352..543 | 451..260 | 510 | 90.6 | Minus |
CG7170-PA | 789 | Jon66Cii-RA | 699..758 | 104..45 | 225 | 95 | Minus |
CG31034-PA | 798 | Jon99Cii-RA | 465..549 | 353..269 | 225 | 90.5 | Minus |
CG31362-PA | 798 | Jon99Ciii-RA | 465..549 | 353..269 | 225 | 90.5 | Minus |
CG8867-PA | 801 | Jon25Bi-RA | 370..454 | 448..364 | 225 | 90.5 | Minus |
CG8867-PB | 801 | Jon25Bi-RB | 370..454 | 448..364 | 225 | 90.5 | Minus |
CG2229-PA | 804 | Jon99Fii-RA | 380..452 | 444..372 | 215 | 91.7 | Minus |
CG18030-PA | 804 | Jon99Fi-RA | 397..452 | 427..372 | 205 | 94.6 | Minus |
CG2229-PA | 804 | Jon99Fii-RA | 471..533 | 353..291 | 190 | 92 | Minus |
CG18030-PA | 804 | Jon99Fi-RA | 471..533 | 353..291 | 190 | 92 | Minus |
CG7118-PA | 783 | Jon66Ci-RA | 715..770 | 82..27 | 180 | 92.8 | Minus |
CG8869-PA | 831 | Jon25Bii-RA | 794..831 | 54..17 | 140 | 94.7 | Minus |
CG18180-PA | 795 | CG18180-RA | 518..549 | 300..269 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Biii-RA | 827 | CG8871-RA | 309..796 | 504..17 | 2440 | 100 | Minus |
Jon66Cii-RA | 830 | CG7170-RA | 302..788 | 504..18 | 1220 | 83.6 | Minus |
Jon66Ci-RA | 838 | CG7118-RA | 305..797 | 504..18 | 1030 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4949972..4950459 | 17..504 | 2440 | 100 | Plus |
3L | 28110227 | 3L | 8392862..8393348 | 18..504 | 1220 | 83.4 | Plus |
3L | 28110227 | 3L | 8391844..8392336 | 504..18 | 1005 | 80.7 | Minus |
3R | 32079331 | 3R | 30487094..30487528 | 11..448 | 715 | 78.1 | Plus |
2L | 23513712 | 2L | 4954633..4954754 | 327..448 | 355 | 86.1 | Plus |
2L | 23513712 | 2L | 4952284..4952494 | 17..227 | 350 | 77.7 | Plus |
3L | 28110227 | 3L | 9641508..9641703 | 344..146 | 285 | 77.4 | Minus |
3L | 28110227 | 3L | 6052754..6052858 | 448..344 | 270 | 83.8 | Minus |
3L | 28110227 | 3L | 6053956..6054059 | 345..448 | 235 | 81.7 | Plus |
3L | 28110227 | 3L | 6053626..6053682 | 15..71 | 180 | 87.7 | Plus |
3L | 28110227 | 3L | 9639814..9639972 | 304..146 | 180 | 74.2 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:55:44 has no hits.
BS13941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:54 Download gff for
BS13941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8871-PA | 290..777 | 17..504 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:03 Download gff for
BS13941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 309..804 | 7..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:31 Download gff for
BS13941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 309..804 | 7..504 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:31 Download gff for
BS13941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4949964..4950459 | 7..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:03 Download gff for
BS13941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4949964..4950459 | 7..504 | 99 | | Plus |
BS13941.5prime Sequence
491 bp (460 high quality bases) assembled on 2006-10-13
> BS13941.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCT
BS13941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8871-PA | 777 | Jon25Biii-RA | 1..475 | 17..491 | 2375 | 100 | Plus |
CG7118-PA | 783 | Jon66Ci-RA | 337..472 | 356..491 | 355 | 90.4 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 352..484 | 359..491 | 340 | 90.2 | Plus |
CG7118-PA | 783 | Jon66Ci-RA | 133..241 | 149..257 | 270 | 89.9 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 142..254 | 149..261 | 265 | 89.3 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 370..454 | 362..446 | 225 | 90.5 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 370..454 | 362..446 | 225 | 90.5 | Plus |
CG2229-PA | 804 | Jon99Fii-RA | 380..452 | 366..438 | 215 | 91.7 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 277..333 | 287..343 | 210 | 94.7 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 277..333 | 287..343 | 210 | 94.7 | Plus |
CG18030-PA | 804 | Jon99Fi-RA | 397..452 | 383..438 | 205 | 94.6 | Plus |
CG7170-PA | 789 | Jon66Cii-RA | 271..312 | 278..319 | 185 | 97.6 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 181..230 | 191..240 | 175 | 94 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 181..230 | 191..240 | 175 | 94 | Plus |
CG7118-PA | 783 | Jon66Ci-RA | 259..300 | 278..319 | 160 | 95.2 | Plus |
CG8867-PA | 801 | Jon25Bi-RA | 132..173 | 148..189 | 135 | 92.8 | Plus |
CG8867-PB | 801 | Jon25Bi-RB | 132..173 | 148..189 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Biii-RA | 827 | CG8871-RA | 19..494 | 16..491 | 2380 | 100 | Plus |
Jon66Ci-RA | 838 | CG7118-RA | 17..490 | 15..491 | 1110 | 82.7 | Plus |
Jon66Cii-RA | 830 | CG7170-RA | 113..487 | 117..491 | 1095 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4950274..4950749 | 491..16 | 2380 | 100 | Minus |
3L | 28110227 | 3L | 8393163..8393537 | 491..117 | 1095 | 86.1 | Minus |
3L | 28110227 | 3L | 8391556..8392029 | 15..491 | 1060 | 82 | Plus |
2L | 23513712 | 2L | 4954633..4955051 | 483..89 | 615 | 77.6 | Minus |
3R | 32079331 | 3R | 30487399..30487528 | 491..362 | 380 | 86.2 | Minus |
3L | 28110227 | 3L | 6052754..6052858 | 362..466 | 270 | 83.8 | Plus |
3L | 28110227 | 3L | 6053956..6054059 | 465..362 | 235 | 81.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:21:30 has no hits.
BS13941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:55 Download gff for
BS13941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8871-PA | 1..475 | 17..491 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:19 Download gff for
BS13941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 13..494 | 9..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:00 Download gff for
BS13941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 13..494 | 9..491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:00 Download gff for
BS13941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4950274..4950755 | 9..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:19 Download gff for
BS13941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4950274..4950755 | 9..491 | 99 | | Minus |
BS13941.complete Sequence
809 bp assembled on 2006-11-01
GenBank Submission: FJ637559
> BS13941.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCTACGACGGCA
GCCCACTGCCCGACTGGCTGCAGTGCGTCGATCTCCAGATCGTCCACAAC
GAAGAGTGCGGCTGGACCTACGGCAGCGTTGGCGACAACGTCATCTGCAC
CCGCACCGTCGACGGCAAGTCCATTTGCGGAGGTGACTCTGGCGGTCCCC
TTGTCACACACGACGGCTCCAAGCTGGTGGGAGTTAGCAACTTCGTCTCC
TCCAACGGCTGCCAGTCGGGTGCTCCTGCTGGATTCCAGCGCGTCACCTA
CCACTTGGACTGGATCCGTGACCACACTGGCATCTCTTACTAAAAGCTTT
CTAGACCAT
BS13941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Biii-RA | 777 | CG8871-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Jon66Cii-RA | 789 | CG7170-PA | 110..785 | 117..792 | 1730 | 83.7 | Plus |
Jon66Ci-RA | 783 | CG7118-PA | 1..779 | 17..792 | 1530 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Biii-RA | 827 | CG8871-RA | 19..796 | 16..793 | 3890 | 100 | Plus |
Jon66Cii-RA | 830 | CG7170-RA | 113..788 | 117..792 | 1730 | 83.7 | Plus |
Jon66Ci-RA | 838 | CG7118-RA | 17..797 | 15..792 | 1540 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4949972..4950749 | 793..16 | 3890 | 100 | Minus |
3L | 28110227 | 3L | 8392862..8393537 | 792..117 | 1730 | 83.7 | Minus |
3L | 28110227 | 3L | 8391556..8392336 | 15..792 | 1540 | 80.4 | Plus |
3R | 32079331 | 3R | 30487094..30487528 | 799..362 | 715 | 78.1 | Minus |
3R | 32079331 | 3R | 30489363..30489791 | 362..793 | 685 | 77.8 | Plus |
3R | 32079331 | 3R | 29923790..29924218 | 793..362 | 655 | 77.3 | Minus |
3R | 32079331 | 3R | 29922611..29923039 | 362..793 | 640 | 77.1 | Plus |
2L | 23513712 | 2L | 4954633..4955051 | 483..89 | 615 | 77.6 | Minus |
2L | 23513712 | 2L | 4952284..4952494 | 793..583 | 350 | 77.7 | Minus |
2R | 25286936 | 2R | 8691847..8691969 | 362..484 | 315 | 83.7 | Plus |
3L | 28110227 | 3L | 9641508..9641703 | 466..664 | 285 | 77.4 | Plus |
3L | 28110227 | 3L | 6052754..6052858 | 362..466 | 270 | 83.8 | Plus |
3L | 28110227 | 3L | 6053956..6054059 | 465..362 | 235 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:46 has no hits.
BS13941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:44 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:06 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 9..800 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:19 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 20..794 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:44 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 9..800 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:54 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon25Biii-RA | 20..794 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:54 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4949974..4950748 | 17..791 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:19 Download gff for
BS13941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4949974..4950748 | 17..791 | 100 | | Minus |
BS13941.pep Sequence
Translation from 16 to 792
> BS13941.pep
MKVFLAILALAVASASAFDEKVFVKDLPKATKIEGRITNGYAAPEGKAPY
TVGLGFSGGWWCGGSIIAHDWVLTAEHCIGDAASVIVYFGATWRTNAQFT
HTVGNGNFIKHSNADIALIRIPHVDFWHMVNKVELPSYNDRYNNYNEWWA
VACGWGGTYDGSPLPDWLQCVDLQIVHNEECGWTYGSVGDNVICTRTVDG
KSICGGDSGGPLVTHDGSKLVGVSNFVSSNGCQSGAPAGFQRVTYHLDWI
RDHTGISY*
BS13941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..258 | 1435 | 100 | Plus |
Jon66Cii-PA | 262 | CG7170-PA | 1..261 | 1..258 | 1192 | 83.5 | Plus |
Jon66Ci-PA | 260 | CG7118-PA | 1..259 | 1..258 | 1179 | 82.3 | Plus |
Jon25Bi-PB | 266 | CG8867-PB | 1..265 | 1..258 | 951 | 66.7 | Plus |
Jon99Fi-PA | 267 | CG18030-PA | 4..267 | 5..258 | 873 | 63.4 | Plus |