Clone Sequence Records
BS13945.3prime Sequence
582 bp (580 high quality bases) assembled on 2006-10-13
> BS13945.3prime
ATGGTCTAGAAAGCTTCTAAGGGGTTTTTTCGGGTGAACATACATCCAGC
AGGGGCTCAGACTGGAGTTTCCAGTGCTCGAGTACGTAAGGCAGCCGTTC
GCTGGGATCTGTGCTCCAGTGGTGCAGACGACACTTGAGTCGCGCCTGTT
CCAGCTTGTTTATGGTCACAGTGCAGTAGAAGTCCTTGTTCTCCTTCTTC
AGGTCGGGTCCCTCGATGCGCTCCTTGGGCAGGGTAATGCACTCCTCGCG
ACAATAGAACCCAGTCTTGCGCAGCGAGGCCTTGATGTGCCAGGGCTCGA
GCACCCATGGCTCATCCTTGTTCATGACCACCGCCAGCACAATGGTCTCC
AGCATGTTGACCGTGCGCTGGGCGTAGGGGGAGCTGTGTTTAACAGTCGA
TTTTTCAGCCTCTGTCTTGGCGTACTTGGCCACATTCTCCGGCGTATTGT
ACGCGGCCAAACCCGGCAGCAGGAGCTTATTGTAGACAAAGTGCGGCTTC
ATTGACACCACGTCGCCCTTGTCGCCAACGCCCTCGACGAAGGTCTTTAA
CACCACCTCGATGTTGGGCCGCTTTTTGACCA
BS13945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31478-PA | 747 | mRpL9-RA | 182..747 | 582..17 | 2805 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-RA | 794 | CG31478-RA | 198..764 | 582..16 | 2820 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15330992..15331558 | 582..16 | 2820 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:49 has no hits.
BS13945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:58 Download gff for
BS13945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31478-PA | 183..747 | 17..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:47 Download gff for
BS13945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 199..764 | 16..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:17 Download gff for
BS13945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 199..764 | 16..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:17 Download gff for
BS13945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15330993..15331558 | 16..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:47 Download gff for
BS13945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11156715..11157280 | 16..581 | 99 | | Minus |
BS13945.5prime Sequence
691 bp (618 high quality bases) assembled on 2006-10-13
> BS13945.5prime
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCAACAGATCCCAGCGAACGGCTGCC
BS13945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31478-PA | 747 | mRpL9-RA | 1..652 | 17..668 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-RA | 794 | CG31478-RA | 17..690 | 17..691 | 3350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15330882..15331484 | 88..691 | 2970 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15330754..15330825 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:04:11 has no hits.
BS13945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:45:59 Download gff for
BS13945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31478-PA | 1..674 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:28 Download gff for
BS13945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 11..690 | 11..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:14 Download gff for
BS13945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 11..690 | 11..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:14 Download gff for
BS13945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15330748..15330825 | 11..88 | 96 | -> | Plus |
| 3R | 15330883..15331484 | 89..691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:28 Download gff for
BS13945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11156470..11156547 | 11..88 | 96 | -> | Plus |
| arm_3R | 11156605..11157206 | 89..691 | 99 | | Plus |
BS13945.complete Sequence
779 bp assembled on 2006-11-01
GenBank Submission: FJ637560
> BS13945.complete
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTC
GAGCACTGGAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGA
AAAAACCCCTTAGAAGCTTTCTAGACCAT
BS13945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-RA | 747 | CG31478-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-RA | 794 | CG31478-RA | 17..764 | 17..764 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15330882..15331558 | 88..764 | 3385 | 100 | Plus |
| 3R | 32079331 | 3R | 15330754..15330825 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:06 has no hits.
BS13945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:38 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:58 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 9..762 | 11..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:54 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 22..763 | 22..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:38 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 9..762 | 11..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:08 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 22..763 | 22..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:08 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15330759..15330825 | 22..88 | 100 | -> | Plus |
| 3R | 15330883..15331557 | 89..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:54 Download gff for
BS13945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11156481..11156547 | 22..88 | 100 | -> | Plus |
| arm_3R | 11156605..11157279 | 89..763 | 100 | | Plus |
BS13945.pep Sequence
Translation from 16 to 762
> BS13945.pep
MLKNIYVTPLNLLKSATSLQQQVRTTFVLKRKYDPPLHKTNEKPRRMRAK
NFIYELVDDTLVKKRPNIEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLP
GLAAYNTPENVAKYAKTEAEKSTVKHSSPYAQRTVNMLETIVLAVVMNKD
EPWVLEPWHIKASLRKTGFYCREECITLPKERIEGPDLKKENKDFYCTVT
INKLEQARLKCRLHHWSTDPSERLPYVLEHWKLQSEPLLDVCSPEKTP*
BS13945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-PA | 248 | CG31478-PA | 1..248 | 1..248 | 1315 | 100 | Plus |
