Clone Sequence Records
BS13947.3prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS13947.3prime
ATGGTCTAGAAAGCTTTTAGTGGATCTTTTCCCAGTCCTCACGCTCCTCG
CGCTCCTTCACGACCTCCTTGAGGTAGGGTTCCAGATACTTGACGTCCTC
CTCGTACTTGGTCCACTGCTCCTTGGGCAGAATGGTCTTGGTCATGGACA
GATGGAGGGCCCTCATGATGCGGTAGTTACGCTCATCGTACAGCTTCCTG
GGCAATCGGCGCACGGCCTCCTTCACATCCTCGTTCTCATACAGACAATC
ATCGCGATGCAGACCGTATTGGTTGAATCCGGAGAGATTGTAGGCCCATC
TGCCCAGATTTGAGAGAACTGCGGGTCCCTTTCTGGCAATATAGTTCGAC
ATGTCGACTGATAACT
BS13947.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 336 | CG3560-RA | 1..336 | 352..17 | 1680 | 100 | Minus |
CG17856-PA | 336 | CG17856-RA | 205..266 | 148..87 | 235 | 95.1 | Minus |
CG17856-PA | 336 | CG17856-RA | 73..129 | 280..224 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..459 | 353..16 | 1690 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 738..987 | 16..265 | 1250 | 100 | Plus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 353..32 | 650 | 80.1 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 263..312 | 250 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 313..353 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286924 | 265..16 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 28294133..28294454 | 353..32 | 650 | 80.1 | Minus |
X | 23542271 | X | 16286565..16286614 | 312..263 | 250 | 100 | Minus |
X | 23542271 | X | 16286409..16286449 | 353..313 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:28:58 has no hits.
BS13947.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:00 Download gff for
BS13947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 17..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:04 Download gff for
BS13947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..462 | 13..353 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:44 Download gff for
BS13947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..462 | 13..353 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:44 Download gff for
BS13947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286403..16286449 | 313..358 | 93 | -> | Minus |
X | 16286565..16286612 | 265..312 | 100 | -> | Minus |
X | 16286676..16286927 | 13..264 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:04 Download gff for
BS13947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180436..16180482 | 313..358 | 93 | -> | Minus |
arm_X | 16180598..16180645 | 265..312 | 100 | -> | Minus |
arm_X | 16180709..16180960 | 13..264 | 99 | | Minus |
BS13947.5prime Sequence
366 bp (366 high quality bases) assembled on 2006-10-13
> BS13947.5prime
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACT
AAAAGCTTTCTAGACC
BS13947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 336 | CG3560-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG17856-PA | 336 | CG17856-RA | 205..266 | 221..282 | 235 | 95.1 | Plus |
CG17856-PA | 336 | CG17856-RA | 73..129 | 89..145 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..459 | 16..353 | 1690 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 738..987 | 353..104 | 1250 | 100 | Minus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 106..57 | 250 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 56..16 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286924 | 104..353 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 28294133..28294454 | 16..337 | 650 | 80.1 | Plus |
X | 23542271 | X | 16286565..16286614 | 57..106 | 250 | 100 | Plus |
X | 23542271 | X | 16286409..16286449 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:04:25 has no hits.
BS13947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:01 Download gff for
BS13947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-PA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:31 Download gff for
BS13947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..462 | 16..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:16 Download gff for
BS13947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 122..462 | 16..356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:16 Download gff for
BS13947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286403..16286449 | 11..56 | 93 | -> | Plus |
X | 16286565..16286612 | 57..104 | 100 | -> | Plus |
X | 16286676..16286927 | 105..356 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:31 Download gff for
BS13947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180436..16180482 | 11..56 | 93 | -> | Plus |
arm_X | 16180598..16180645 | 57..104 | 100 | -> | Plus |
arm_X | 16180709..16180960 | 105..356 | 99 | | Plus |
BS13947.complete Sequence
368 bp assembled on 2006-11-01
GenBank Submission: FJ637561
> BS13947.complete
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACT
AAAAGCTTTCTAGACCAT
BS13947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 336 | CG3560-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG17856-RA | 336 | CG17856-PA | 1..321 | 17..337 | 645 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-RA | 523 | CG3560-RA | 122..459 | 16..353 | 1690 | 100 | Plus |
CG32576-RA | 1709 | CG32576-RA | 738..987 | 353..104 | 1250 | 100 | Minus |
CG17856-RA | 503 | CG17856-RA | 86..407 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 1048..1097 | 106..57 | 250 | 100 | Minus |
CG32576-RA | 1709 | CG32576-RA | 1213..1253 | 56..16 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16286675..16286924 | 104..353 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 28294133..28294454 | 16..337 | 650 | 80.1 | Plus |
X | 23542271 | X | 16286565..16286614 | 57..106 | 250 | 100 | Plus |
X | 23542271 | X | 16286409..16286449 | 16..56 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:14:04 has no hits.
BS13947.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:39 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 1..336 | 17..352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:00 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 68..408 | 16..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:26 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 123..456 | 17..350 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:39 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 68..408 | 16..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:57 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3560-RA | 123..456 | 17..350 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:57 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16286676..16286921 | 105..350 | 100 | | Plus |
X | 16286410..16286449 | 17..56 | 100 | -> | Plus |
X | 16286565..16286612 | 57..104 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:26 Download gff for
BS13947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16180443..16180482 | 17..56 | 100 | -> | Plus |
arm_X | 16180598..16180645 | 57..104 | 100 | -> | Plus |
arm_X | 16180709..16180954 | 105..350 | 100 | | Plus |
BS13947.pep Sequence
Translation from 16 to 351
> BS13947.pep
MSNYIARKGPAVLSNLGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRL
PRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKE
REEREDWEKIH*
BS13947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3560-PA | 111 | CG3560-PA | 1..111 | 1..111 | 598 | 100 | Plus |
CG17856-PA | 111 | CG17856-PA | 1..111 | 1..111 | 528 | 85.6 | Plus |