Clone BS13947 Report

Search the DGRC for BS13947

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG3560-RA
Protein status:BS13947.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13947.3prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-13

> BS13947.3prime
ATGGTCTAGAAAGCTTTTAGTGGATCTTTTCCCAGTCCTCACGCTCCTCG
CGCTCCTTCACGACCTCCTTGAGGTAGGGTTCCAGATACTTGACGTCCTC
CTCGTACTTGGTCCACTGCTCCTTGGGCAGAATGGTCTTGGTCATGGACA
GATGGAGGGCCCTCATGATGCGGTAGTTACGCTCATCGTACAGCTTCCTG
GGCAATCGGCGCACGGCCTCCTTCACATCCTCGTTCTCATACAGACAATC
ATCGCGATGCAGACCGTATTGGTTGAATCCGGAGAGATTGTAGGCCCATC
TGCCCAGATTTGAGAGAACTGCGGGTCCCTTTCTGGCAATATAGTTCGAC
ATGTCGACTGATAACT

BS13947.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-PA 336 CG3560-RA 1..336 352..17 1680 100 Minus
CG17856-PA 336 CG17856-RA 205..266 148..87 235 95.1 Minus
CG17856-PA 336 CG17856-RA 73..129 280..224 160 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-RA 523 CG3560-RA 122..459 353..16 1690 100 Minus
CG32576-RA 1709 CG32576-RA 738..987 16..265 1250 100 Plus
CG17856-RA 503 CG17856-RA 86..407 353..32 650 80.1 Minus
CG32576-RA 1709 CG32576-RA 1048..1097 263..312 250 100 Plus
CG32576-RA 1709 CG32576-RA 1213..1253 313..353 205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16286675..16286924 265..16 1250 100 Minus
3R 32079331 3R 28294133..28294454 353..32 650 80.1 Minus
X 23542271 X 16286565..16286614 312..263 250 100 Minus
X 23542271 X 16286409..16286449 353..313 205 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:28:58 has no hits.

BS13947.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:00 Download gff for BS13947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:04 Download gff for BS13947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 122..462 13..353 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:44 Download gff for BS13947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 122..462 13..353 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:44 Download gff for BS13947.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16286403..16286449 313..358 93 -> Minus
X 16286565..16286612 265..312 100 -> Minus
X 16286676..16286927 13..264 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:04 Download gff for BS13947.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16180436..16180482 313..358 93 -> Minus
arm_X 16180598..16180645 265..312 100 -> Minus
arm_X 16180709..16180960 13..264 99   Minus

BS13947.5prime Sequence

366 bp (366 high quality bases) assembled on 2006-10-13

> BS13947.5prime
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACT
AAAAGCTTTCTAGACC

BS13947.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-PA 336 CG3560-RA 1..336 17..352 1680 100 Plus
CG17856-PA 336 CG17856-RA 205..266 221..282 235 95.1 Plus
CG17856-PA 336 CG17856-RA 73..129 89..145 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-RA 523 CG3560-RA 122..459 16..353 1690 100 Plus
CG32576-RA 1709 CG32576-RA 738..987 353..104 1250 100 Minus
CG17856-RA 503 CG17856-RA 86..407 16..337 650 80.1 Plus
CG32576-RA 1709 CG32576-RA 1048..1097 106..57 250 100 Minus
CG32576-RA 1709 CG32576-RA 1213..1253 56..16 205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16286675..16286924 104..353 1250 100 Plus
3R 32079331 3R 28294133..28294454 16..337 650 80.1 Plus
X 23542271 X 16286565..16286614 57..106 250 100 Plus
X 23542271 X 16286409..16286449 16..56 205 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:04:25 has no hits.

BS13947.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:01 Download gff for BS13947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:31 Download gff for BS13947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 122..462 16..356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:16 Download gff for BS13947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 122..462 16..356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:16 Download gff for BS13947.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16286403..16286449 11..56 93 -> Plus
X 16286565..16286612 57..104 100 -> Plus
X 16286676..16286927 105..356 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:31 Download gff for BS13947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16180436..16180482 11..56 93 -> Plus
arm_X 16180598..16180645 57..104 100 -> Plus
arm_X 16180709..16180960 105..356 99   Plus

BS13947.complete Sequence

368 bp assembled on 2006-11-01

GenBank Submission: FJ637561

> BS13947.complete
GAAGTTATCAGTCGACATGTCGAACTATATTGCCAGAAAGGGACCCGCAG
TTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCAA
TACGGTCTGCATCGCGATGATTGTCTGTATGAGAACGAGGATGTGAAGGA
GGCCGTGCGCCGATTGCCCAGGAAGCTGTACGATGAGCGTAACTACCGCA
TCATGAGGGCCCTCCATCTGTCCATGACCAAGACCATTCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACGTCAAGTATCTGGAACCCTACCTCAA
GGAGGTCGTGAAGGAGCGCGAGGAGCGTGAGGACTGGGAAAAGATCCACT
AAAAGCTTTCTAGACCAT

BS13947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-RA 336 CG3560-PA 1..336 17..352 1680 100 Plus
CG17856-RA 336 CG17856-PA 1..321 17..337 645 80.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-RA 523 CG3560-RA 122..459 16..353 1690 100 Plus
CG32576-RA 1709 CG32576-RA 738..987 353..104 1250 100 Minus
CG17856-RA 503 CG17856-RA 86..407 16..337 650 80.1 Plus
CG32576-RA 1709 CG32576-RA 1048..1097 106..57 250 100 Minus
CG32576-RA 1709 CG32576-RA 1213..1253 56..16 205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16286675..16286924 104..353 1250 100 Plus
3R 32079331 3R 28294133..28294454 16..337 650 80.1 Plus
X 23542271 X 16286565..16286614 57..106 250 100 Plus
X 23542271 X 16286409..16286449 16..56 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:14:04 has no hits.

BS13947.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:39 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:00 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 68..408 16..356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:26 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 123..456 17..350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:39 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 68..408 16..356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:57 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
CG3560-RA 123..456 17..350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:57 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
X 16286676..16286921 105..350 100   Plus
X 16286410..16286449 17..56 100 -> Plus
X 16286565..16286612 57..104 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:26 Download gff for BS13947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16180443..16180482 17..56 100 -> Plus
arm_X 16180598..16180645 57..104 100 -> Plus
arm_X 16180709..16180954 105..350 100   Plus

BS13947.pep Sequence

Translation from 16 to 351

> BS13947.pep
MSNYIARKGPAVLSNLGRWAYNLSGFNQYGLHRDDCLYENEDVKEAVRRL
PRKLYDERNYRIMRALHLSMTKTILPKEQWTKYEEDVKYLEPYLKEVVKE
REEREDWEKIH*

BS13947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3560-PA 111 CG3560-PA 1..111 1..111 598 100 Plus
CG17856-PA 111 CG17856-PA 1..111 1..111 528 85.6 Plus