Clone Sequence Records
BS13952.3prime Sequence
551 bp (482 high quality bases) assembled on 2006-10-13
> BS13952.3prime
ATGGTCTAGAAAGCTTTTATTCGAAGTACTTCTTGAACTCCAGGCATCCG
GCCCAGTTCTCCTCCCATCCGGGAGTCACCTTCTTGGCGTTCTCGTACCA
CCTGTTCACATTGGCGTACTTGCTGATCTCGAATTTGGCCACCTCGAATG
TGGACACGGTTGCCACCAGGGCAATGTCGGCTACGGTAAGGGAGTCACCG
GCGGCGTAGTCCTGTCCCTCCAGGAAGGTGTTCAGGAACTCGAAGGCGGC
CTCGATCTTCTTGAAGGCCTCTGGATCGGCGGGCGCCTTGGCGAACACCT
GTGGGTAGTAGTAGTTGGCGAAGCTCTGGTACAGCGTTCCCATGTCGAAG
TACAGGCGCTGATTGATCACGGCGCGCTTCTTGGGGCACTTAGGGTACAG
GGAGTCGGTCTTGCCGTACTTCTCCACCAAATACACCTGGATGGCGCGGG
ACTCCCACAGCGCGAATCCGTTGTCCACCAGCGTGGGAATGGTGTGCTGG
GGATTGATCTTCAGGAACTCCGGCTTCAGGTGCTCACCGGCCTGCAGGTT
G
BS13952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10045-PA | 630 | GstD1-RA | 96..630 | 551..17 | 2675 | 100 | Minus |
CG10045-PB | 630 | GstD1-RB | 96..630 | 551..17 | 2675 | 100 | Minus |
CG11512-PA | 648 | GstD4-RA | 137..182 | 507..462 | 205 | 97.8 | Minus |
CG4181-PA | 648 | GstD2-RA | 259..338 | 385..306 | 200 | 90 | Minus |
CG4181-PA | 648 | GstD2-RA | 137..180 | 507..464 | 195 | 97.7 | Minus |
CG12242-PA | 651 | GstD5-RA | 146..180 | 498..464 | 175 | 100 | Minus |
CG18548-PA | 633 | GstD10-RA | 278..317 | 369..330 | 175 | 97.5 | Minus |
CG12242-PA | 651 | GstD5-RA | 553..591 | 91..53 | 170 | 97.4 | Minus |
CG4181-PA | 648 | GstD2-RA | 540..592 | 104..52 | 165 | 92.4 | Minus |
CG17524-PA | 663 | GstE3-RA | 118..162 | 535..491 | 150 | 93.3 | Minus |
CG4371-PA | 675 | GstD7-RA | 154..188 | 499..465 | 150 | 97.1 | Minus |
CG12242-PA | 651 | GstD5-RA | 286..338 | 358..306 | 140 | 90.5 | Minus |
CG4421-PA | 639 | GstD8-RA | 540..592 | 104..52 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 184..718 | 551..17 | 2675 | 100 | Minus |
GstD1-RA | 825 | CG10045-RA | 166..700 | 551..17 | 2675 | 100 | Minus |
GstD2-RA | 734 | CG4181-RA | 133..619 | 538..52 | 800 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12367942..12368476 | 17..551 | 2675 | 100 | Plus |
3R | 32079331 | 3R | 12375879..12376354 | 528..53 | 760 | 77.3 | Minus |
3R | 32079331 | 3R | 12372103..12372589 | 538..52 | 755 | 77 | Minus |
3R | 32079331 | 3R | 12364920..12365423 | 21..524 | 645 | 75.2 | Plus |
3R | 32079331 | 3R | 12380140..12380631 | 539..48 | 585 | 74.6 | Minus |
3R | 32079331 | 3R | 12374264..12374464 | 532..332 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12366543..12366792 | 292..541 | 365 | 76.4 | Plus |
3R | 32079331 | 3R | 12378660..12378872 | 538..329 | 355 | 78.9 | Minus |
3R | 32079331 | 3R | 12373190..12373678 | 535..47 | 315 | 71 | Minus |
3R | 32079331 | 3R | 12377304..12377505 | 511..310 | 230 | 74.3 | Minus |
3R | 32079331 | 3R | 12374534..12374743 | 262..53 | 225 | 73.8 | Minus |
2R | 25286936 | 2R | 18400874..18400931 | 535..478 | 185 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:29:24 has no hits.
BS13952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:03 Download gff for
BS13952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 96..630 | 17..551 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:08 Download gff for
BS13952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 163..699 | 13..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:48 Download gff for
BS13952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 166..702 | 13..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:48 Download gff for
BS13952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12367940..12368476 | 13..551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:08 Download gff for
BS13952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193662..8194198 | 13..551 | 99 | | Plus |
BS13952.5prime Sequence
523 bp (522 high quality bases) assembled on 2006-10-13
> BS13952.5prime
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTG
BS13952.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10045-PA | 630 | GstD1-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
CG10045-PB | 630 | GstD1-RB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG11512-PA | 648 | GstD4-RA | 137..182 | 156..201 | 205 | 97.8 | Plus |
CG4181-PA | 648 | GstD2-RA | 259..338 | 278..357 | 200 | 90 | Plus |
CG4181-PA | 648 | GstD2-RA | 137..180 | 156..199 | 195 | 97.7 | Plus |
CG12242-PA | 651 | GstD5-RA | 146..180 | 165..199 | 175 | 100 | Plus |
CG18548-PA | 633 | GstD10-RA | 278..317 | 294..333 | 175 | 97.5 | Plus |
CG17524-PA | 663 | GstE3-RA | 118..162 | 128..172 | 150 | 93.3 | Plus |
CG4371-PA | 675 | GstD7-RA | 154..188 | 164..198 | 150 | 97.1 | Plus |
CG12242-PA | 651 | GstD5-RA | 286..338 | 305..357 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 89..595 | 17..523 | 2535 | 100 | Plus |
GstD1-RA | 825 | CG10045-RA | 71..577 | 17..523 | 2535 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 61..365 | 53..357 | 655 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12368065..12368571 | 523..17 | 2535 | 100 | Minus |
3R | 32079331 | 3R | 12372031..12372335 | 53..357 | 655 | 81 | Plus |
3R | 32079331 | 3R | 12375800..12376263 | 56..519 | 610 | 75.4 | Plus |
3R | 32079331 | 3R | 12380039..12380539 | 23..523 | 510 | 73.5 | Plus |
3R | 32079331 | 3R | 12365111..12365423 | 451..139 | 485 | 77 | Minus |
3R | 32079331 | 3R | 12374264..12374464 | 131..331 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12366543..12366898 | 371..16 | 430 | 74.7 | Minus |
3R | 32079331 | 3R | 12378609..12378872 | 74..334 | 370 | 76.9 | Plus |
3R | 32079331 | 3R | 12373190..12373420 | 128..358 | 300 | 75.3 | Plus |
3R | 32079331 | 3R | 12377304..12377505 | 152..353 | 230 | 74.3 | Plus |
2R | 25286936 | 2R | 18400874..18400931 | 128..185 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:53:25 has no hits.
BS13952.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:04 Download gff for
BS13952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10045-PB | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:21 Download gff for
BS13952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 68..574 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:44 Download gff for
BS13952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 71..577 | 17..523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:44 Download gff for
BS13952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12368065..12368580 | 6..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:21 Download gff for
BS13952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193787..8194302 | 6..523 | 99 | | Minus |
BS13952.complete Sequence
662 bp assembled on 2006-11-01
GenBank Submission: FJ637563
> BS13952.complete
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAATAAAAGC
TTTCTAGACCAT
BS13952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 630 | CG10045-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
GstD1-RA | 630 | CG10045-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 34..592 | 53..611 | 815 | 76.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-RB | 843 | CG10045-RB | 89..718 | 17..646 | 3150 | 100 | Plus |
GstD1-RA | 825 | CG10045-RA | 71..700 | 17..646 | 3150 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 61..619 | 53..611 | 815 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12367942..12368571 | 646..17 | 3150 | 100 | Minus |
3R | 32079331 | 3R | 12372031..12372589 | 53..611 | 815 | 76.4 | Plus |
3R | 32079331 | 3R | 12375800..12376354 | 56..610 | 780 | 76 | Plus |
3R | 32079331 | 3R | 12380039..12380631 | 23..615 | 670 | 74.2 | Plus |
3R | 32079331 | 3R | 12364920..12365423 | 642..139 | 645 | 75.2 | Minus |
3R | 32079331 | 3R | 12374264..12374464 | 131..331 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12366543..12366898 | 371..16 | 430 | 74.7 | Minus |
3R | 32079331 | 3R | 12378609..12378872 | 74..334 | 370 | 76.9 | Plus |
3R | 32079331 | 3R | 12373190..12373678 | 128..616 | 315 | 71 | Plus |
3R | 32079331 | 3R | 12377304..12377505 | 152..353 | 230 | 74.3 | Plus |
3R | 32079331 | 3R | 12374534..12374743 | 401..610 | 225 | 73.8 | Plus |
2R | 25286936 | 2R | 18400874..18400931 | 128..185 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:15:07 has no hits.
BS13952.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:02 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:53 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 116..756 | 6..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:53 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 68..695 | 17..644 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:02 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RB | 116..756 | 6..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:33 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD1-RA | 71..698 | 17..644 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:33 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12367944..12368571 | 17..644 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:53 Download gff for
BS13952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8193666..8194293 | 17..644 | 100 | | Minus |
BS13952.pep Sequence
Translation from 16 to 645
> BS13952.pep
MVDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQ
HTIPTLVDNGFALWESRAIQVYLVEKYGKTDSLYPKCPKKRAVINQRLYF
DMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAG
DSLTVADIALVATVSTFEVAKFEISKYANVNRWYENAKKVTPGWEENWAG
CLEFKKYFE*
BS13952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD1-PB | 209 | CG10045-PB | 1..209 | 1..209 | 1108 | 100 | Plus |
GstD1-PA | 209 | CG10045-PA | 1..209 | 1..209 | 1108 | 100 | Plus |
GstD10-PB | 210 | CG18548-PB | 1..209 | 2..209 | 817 | 71.3 | Plus |
GstD10-PA | 210 | CG18548-PA | 1..209 | 2..209 | 817 | 71.3 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..208 | 2..209 | 802 | 70.2 | Plus |