Clone BS13952 Report

Search the DGRC for BS13952

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptGstD1-RA
Protein status:BS13952.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13952.3prime Sequence

551 bp (482 high quality bases) assembled on 2006-10-13

> BS13952.3prime
ATGGTCTAGAAAGCTTTTATTCGAAGTACTTCTTGAACTCCAGGCATCCG
GCCCAGTTCTCCTCCCATCCGGGAGTCACCTTCTTGGCGTTCTCGTACCA
CCTGTTCACATTGGCGTACTTGCTGATCTCGAATTTGGCCACCTCGAATG
TGGACACGGTTGCCACCAGGGCAATGTCGGCTACGGTAAGGGAGTCACCG
GCGGCGTAGTCCTGTCCCTCCAGGAAGGTGTTCAGGAACTCGAAGGCGGC
CTCGATCTTCTTGAAGGCCTCTGGATCGGCGGGCGCCTTGGCGAACACCT
GTGGGTAGTAGTAGTTGGCGAAGCTCTGGTACAGCGTTCCCATGTCGAAG
TACAGGCGCTGATTGATCACGGCGCGCTTCTTGGGGCACTTAGGGTACAG
GGAGTCGGTCTTGCCGTACTTCTCCACCAAATACACCTGGATGGCGCGGG
ACTCCCACAGCGCGAATCCGTTGTCCACCAGCGTGGGAATGGTGTGCTGG
GGATTGATCTTCAGGAACTCCGGCTTCAGGTGCTCACCGGCCTGCAGGTT
G

BS13952.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10045-PA 630 GstD1-RA 96..630 551..17 2675 100 Minus
CG10045-PB 630 GstD1-RB 96..630 551..17 2675 100 Minus
CG11512-PA 648 GstD4-RA 137..182 507..462 205 97.8 Minus
CG4181-PA 648 GstD2-RA 259..338 385..306 200 90 Minus
CG4181-PA 648 GstD2-RA 137..180 507..464 195 97.7 Minus
CG12242-PA 651 GstD5-RA 146..180 498..464 175 100 Minus
CG18548-PA 633 GstD10-RA 278..317 369..330 175 97.5 Minus
CG12242-PA 651 GstD5-RA 553..591 91..53 170 97.4 Minus
CG4181-PA 648 GstD2-RA 540..592 104..52 165 92.4 Minus
CG17524-PA 663 GstE3-RA 118..162 535..491 150 93.3 Minus
CG4371-PA 675 GstD7-RA 154..188 499..465 150 97.1 Minus
CG12242-PA 651 GstD5-RA 286..338 358..306 140 90.5 Minus
CG4421-PA 639 GstD8-RA 540..592 104..52 140 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 184..718 551..17 2675 100 Minus
GstD1-RA 825 CG10045-RA 166..700 551..17 2675 100 Minus
GstD2-RA 734 CG4181-RA 133..619 538..52 800 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12367942..12368476 17..551 2675 100 Plus
3R 32079331 3R 12375879..12376354 528..53 760 77.3 Minus
3R 32079331 3R 12372103..12372589 538..52 755 77 Minus
3R 32079331 3R 12364920..12365423 21..524 645 75.2 Plus
3R 32079331 3R 12380140..12380631 539..48 585 74.6 Minus
3R 32079331 3R 12374264..12374464 532..332 480 82.6 Minus
3R 32079331 3R 12366543..12366792 292..541 365 76.4 Plus
3R 32079331 3R 12378660..12378872 538..329 355 78.9 Minus
3R 32079331 3R 12373190..12373678 535..47 315 71 Minus
3R 32079331 3R 12377304..12377505 511..310 230 74.3 Minus
3R 32079331 3R 12374534..12374743 262..53 225 73.8 Minus
2R 25286936 2R 18400874..18400931 535..478 185 87.9 Minus
Blast to na_te.dros performed on 2015-02-06 10:29:24 has no hits.

BS13952.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:03 Download gff for BS13952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 96..630 17..551 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:08 Download gff for BS13952.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 163..699 13..551 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:48 Download gff for BS13952.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 166..702 13..551 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:48 Download gff for BS13952.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12367940..12368476 13..551 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:08 Download gff for BS13952.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193662..8194198 13..551 99   Plus

BS13952.5prime Sequence

523 bp (522 high quality bases) assembled on 2006-10-13

> BS13952.5prime
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTG

BS13952.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10045-PA 630 GstD1-RA 1..507 17..523 2535 100 Plus
CG10045-PB 630 GstD1-RB 1..507 17..523 2535 100 Plus
CG11512-PA 648 GstD4-RA 137..182 156..201 205 97.8 Plus
CG4181-PA 648 GstD2-RA 259..338 278..357 200 90 Plus
CG4181-PA 648 GstD2-RA 137..180 156..199 195 97.7 Plus
CG12242-PA 651 GstD5-RA 146..180 165..199 175 100 Plus
CG18548-PA 633 GstD10-RA 278..317 294..333 175 97.5 Plus
CG17524-PA 663 GstE3-RA 118..162 128..172 150 93.3 Plus
CG4371-PA 675 GstD7-RA 154..188 164..198 150 97.1 Plus
CG12242-PA 651 GstD5-RA 286..338 305..357 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 89..595 17..523 2535 100 Plus
GstD1-RA 825 CG10045-RA 71..577 17..523 2535 100 Plus
GstD2-RA 734 CG4181-RA 61..365 53..357 655 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12368065..12368571 523..17 2535 100 Minus
3R 32079331 3R 12372031..12372335 53..357 655 81 Plus
3R 32079331 3R 12375800..12376263 56..519 610 75.4 Plus
3R 32079331 3R 12380039..12380539 23..523 510 73.5 Plus
3R 32079331 3R 12365111..12365423 451..139 485 77 Minus
3R 32079331 3R 12374264..12374464 131..331 480 82.6 Plus
3R 32079331 3R 12366543..12366898 371..16 430 74.7 Minus
3R 32079331 3R 12378609..12378872 74..334 370 76.9 Plus
3R 32079331 3R 12373190..12373420 128..358 300 75.3 Plus
3R 32079331 3R 12377304..12377505 152..353 230 74.3 Plus
2R 25286936 2R 18400874..18400931 128..185 185 87.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:53:25 has no hits.

BS13952.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:04 Download gff for BS13952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10045-PB 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:21 Download gff for BS13952.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 68..574 17..523 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:44 Download gff for BS13952.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 71..577 17..523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:44 Download gff for BS13952.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12368065..12368580 6..523 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:21 Download gff for BS13952.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193787..8194302 6..523 99   Minus

BS13952.complete Sequence

662 bp assembled on 2006-11-01

GenBank Submission: FJ637563

> BS13952.complete
GAAGTTATCAGTCGACATGGTTGACTTCTACTACCTGCCCGGCTCCTCCC
CCTGCCGCTCCGTGATCATGACCGCCAAGGCCGTGGGCGTCGAGCTGAAC
AAGAAGCTGCTCAACCTGCAGGCCGGTGAGCACCTGAAGCCGGAGTTCCT
GAAGATCAATCCCCAGCACACCATTCCCACGCTGGTGGACAACGGATTCG
CGCTGTGGGAGTCCCGCGCCATCCAGGTGTATTTGGTGGAGAAGTACGGC
AAGACCGACTCCCTGTACCCTAAGTGCCCCAAGAAGCGCGCCGTGATCAA
TCAGCGCCTGTACTTCGACATGGGAACGCTGTACCAGAGCTTCGCCAACT
ACTACTACCCACAGGTGTTCGCCAAGGCGCCCGCCGATCCAGAGGCCTTC
AAGAAGATCGAGGCCGCCTTCGAGTTCCTGAACACCTTCCTGGAGGGACA
GGACTACGCCGCCGGTGACTCCCTTACCGTAGCCGACATTGCCCTGGTGG
CAACCGTGTCCACATTCGAGGTGGCCAAATTCGAGATCAGCAAGTACGCC
AATGTGAACAGGTGGTACGAGAACGCCAAGAAGGTGACTCCCGGATGGGA
GGAGAACTGGGCCGGATGCCTGGAGTTCAAGAAGTACTTCGAATAAAAGC
TTTCTAGACCAT

BS13952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 630 CG10045-PB 1..630 17..646 3150 100 Plus
GstD1-RA 630 CG10045-PA 1..630 17..646 3150 100 Plus
GstD2-RA 648 CG4181-PA 34..592 53..611 815 76.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-RB 843 CG10045-RB 89..718 17..646 3150 100 Plus
GstD1-RA 825 CG10045-RA 71..700 17..646 3150 100 Plus
GstD2-RA 734 CG4181-RA 61..619 53..611 815 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12367942..12368571 646..17 3150 100 Minus
3R 32079331 3R 12372031..12372589 53..611 815 76.4 Plus
3R 32079331 3R 12375800..12376354 56..610 780 76 Plus
3R 32079331 3R 12380039..12380631 23..615 670 74.2 Plus
3R 32079331 3R 12364920..12365423 642..139 645 75.2 Minus
3R 32079331 3R 12374264..12374464 131..331 480 82.6 Plus
3R 32079331 3R 12366543..12366898 371..16 430 74.7 Minus
3R 32079331 3R 12378609..12378872 74..334 370 76.9 Plus
3R 32079331 3R 12373190..12373678 128..616 315 71 Plus
3R 32079331 3R 12377304..12377505 152..353 230 74.3 Plus
3R 32079331 3R 12374534..12374743 401..610 225 73.8 Plus
2R 25286936 2R 18400874..18400931 128..185 185 87.9 Plus
Blast to na_te.dros performed on 2014-11-26 22:15:07 has no hits.

BS13952.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:02 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 1..630 17..646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:53 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 116..756 6..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:53 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 68..695 17..644 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:02 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RB 116..756 6..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:33 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
GstD1-RA 71..698 17..644 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:33 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12367944..12368571 17..644 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:53 Download gff for BS13952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8193666..8194293 17..644 100   Minus

BS13952.pep Sequence

Translation from 16 to 645

> BS13952.pep
MVDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQ
HTIPTLVDNGFALWESRAIQVYLVEKYGKTDSLYPKCPKKRAVINQRLYF
DMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTFLEGQDYAAG
DSLTVADIALVATVSTFEVAKFEISKYANVNRWYENAKKVTPGWEENWAG
CLEFKKYFE*

BS13952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
GstD1-PB 209 CG10045-PB 1..209 1..209 1108 100 Plus
GstD1-PA 209 CG10045-PA 1..209 1..209 1108 100 Plus
GstD10-PB 210 CG18548-PB 1..209 2..209 817 71.3 Plus
GstD10-PA 210 CG18548-PA 1..209 2..209 817 71.3 Plus
GstD2-PA 215 CG4181-PA 1..208 2..209 802 70.2 Plus