Clone Sequence Records
BS13954.3prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS13954.3prime
ATGGTCTAGAAAGCTTCTAGCGTCCAAGTTCAGTTGCTTCTGCTGCTTGA
GTTTCACTGGCGGCCACATTTCCACCCAGCAGCTTGGCGGGACGAGGGCG
CCTCTTTCGCATCTGCTTGGAGTCCACGTACTGCCGCTGACTGGATCCGA
ATGCCGTTGACGGACGCAGTGTTTGCACCTGGATGAAGGGTGAGTTCATT
TGGCTGCCGGTGGTGTCTTTCTTGGGCGGTAGGTCCTGCGGATGCACGCG
GATCACCTTCTGCGTTTGGTTGGCTATGCTGATCACATCCTCCTCAATGT
CCGTGGACTCTTCGATGGCGAGGGATGCCCAGGTCAGTGCACCCAAGCAG
AAGCAGAAGAGCATTAGCCGATGATTGGCGAACATGTCGACTGATAACT
BS13954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-PB | 369 | CG10205-RB | 1..369 | 385..17 | 1820 | 99.7 | Minus |
CG10205-PA | 675 | CG10205-RA | 1..331 | 385..55 | 1630 | 99.6 | Minus |
CG10205-PA | 675 | CG10205-RA | 387..425 | 55..17 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-RB | 848 | CG10205-RB | 101..469 | 385..17 | 1830 | 99.7 | Minus |
CG10205-RA | 904 | CG10205-RA | 101..431 | 385..55 | 1640 | 99.7 | Minus |
CG10205-RA | 904 | CG10205-RA | 487..525 | 55..17 | 195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14833171..14833478 | 362..55 | 1525 | 99.7 | Minus |
2R | 25286936 | 2R | 14833534..14833572 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:01:23 has no hits.
BS13954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:05 Download gff for
BS13954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-PB | 1..369 | 17..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:11 Download gff for
BS13954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 101..469 | 17..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:30 Download gff for
BS13954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 101..469 | 17..385 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:30 Download gff for
BS13954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14833172..14833478 | 55..361 | 99 | -> | Minus |
2R | 14833535..14833572 | 17..54 | 100 | | Minus |
2R | 14832932..14832955 | 362..385 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:11 Download gff for
BS13954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10720437..10720460 | 362..385 | 100 | -> | Minus |
arm_2R | 10720677..10720983 | 55..361 | 99 | -> | Minus |
arm_2R | 10721040..10721077 | 17..54 | 100 | | Minus |
BS13954.5prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BS13954.5prime
GAAGTTATCAGTCGACATGTTCGCCAATCATCGGCTAATGCTCTTCTGCT
TCTGCTTGGGTGCACTGACCTGGGCATCCCTCGCCATCGAAGAGTCCACG
GACATTGAGGAGGATGTGATCAGCATAGCCAACCAAACGCAGAAGGTGAT
CCGCGTGCATCCGCAGGACCTACCGCCCAAGAAAGACACCACCGGCAGCC
AAATGAACTCACCCTTCATCCAGGTGCAAACACTGCGTCCGTCAACGGCA
TTCGGATCCAGTCAGCGGCAGTACGTGGACTCCAAGCAGATGCGAAAGAG
GCGCCCTCGTCCCGCCAAGCTGCTGGGTGGAAATGTGGCCGCCAGTGAAA
CTCAAGCAGCAGAAGCAACTGAACTTGGACGCTAGAAGCTTTCTAGACC
BS13954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-PB | 369 | CG10205-RB | 1..369 | 17..385 | 1820 | 99.7 | Plus |
CG10205-PA | 675 | CG10205-RA | 1..331 | 17..347 | 1630 | 99.6 | Plus |
CG10205-PA | 675 | CG10205-RA | 387..425 | 347..385 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-RB | 848 | CG10205-RB | 101..469 | 17..385 | 1830 | 99.7 | Plus |
CG10205-RA | 904 | CG10205-RA | 101..431 | 17..347 | 1640 | 99.7 | Plus |
CG10205-RA | 904 | CG10205-RA | 487..525 | 347..385 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14833171..14833478 | 40..347 | 1525 | 99.7 | Plus |
2R | 25286936 | 2R | 14833534..14833572 | 347..385 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:24:33 has no hits.
BS13954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:05 Download gff for
BS13954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-PB | 1..369 | 17..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:25 Download gff for
BS13954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 101..469 | 17..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:17 Download gff for
BS13954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 101..469 | 17..385 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:17 Download gff for
BS13954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14832932..14832955 | 17..40 | 100 | -> | Plus |
2R | 14833172..14833478 | 41..347 | 99 | -> | Plus |
2R | 14833535..14833572 | 348..385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:25 Download gff for
BS13954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10720437..10720460 | 17..40 | 100 | -> | Plus |
arm_2R | 10720677..10720983 | 41..347 | 99 | -> | Plus |
arm_2R | 10721040..10721077 | 348..385 | 100 | | Plus |
BS13954.complete Sequence
401 bp assembled on 2006-11-01
GenBank Submission: FJ637564
> BS13954.complete
GAAGTTATCAGTCGACATGTTCGCCAATCATCGGCTAATGCTCTTCTGCT
TCTGCTTGGGTGCACTGACCTGGGCATCCCTCGCCATCGAAGAGTCCACG
GACATTGAGGAGGATGTGATCAGCATAGCCAACCAAACGCAGAAGGTGAT
CCGCGTGCATCCGCAGGACCTACCGCCCAAGAAAGACACCACCGGCAGCC
AAATGAACTCACCCTTCATCCAGGTGCAAACACTGCGTCCGTCAACGGCA
TTCGGATCCAGTCAGCGGCAGTACGTGGACTCCAAGCAGATGCGAAAGAG
GCGCCCTCGTCCCGCCAAGCTGCTGGGTGGAAATGTGGCCGCCAGTGAAA
CTCAAGCAGCAGAAGCAACTGAACTTGGACGCTAGAAGCTTTCTAGACCA
T
BS13954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-RB | 369 | CG10205-PB | 1..369 | 17..385 | 1830 | 99.7 | Plus |
CG10205-RA | 675 | CG10205-PA | 1..331 | 17..347 | 1640 | 99.7 | Plus |
CG10205-RA | 675 | CG10205-PA | 387..425 | 347..385 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-RB | 848 | CG10205-RB | 101..469 | 17..385 | 1830 | 99.7 | Plus |
CG10205-RA | 904 | CG10205-RA | 101..431 | 17..347 | 1640 | 99.7 | Plus |
CG10205-RA | 904 | CG10205-RA | 487..525 | 347..385 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14833171..14833478 | 40..347 | 1525 | 99.7 | Plus |
2R | 25286936 | 2R | 14833534..14833572 | 347..385 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:39 has no hits.
BS13954.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:42 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 1..369 | 17..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:03 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 100..468 | 17..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:39 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 106..469 | 22..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:42 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 100..468 | 17..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:31 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10205-RB | 106..469 | 22..385 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:31 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14832937..14832955 | 22..40 | 100 | -> | Plus |
2R | 14833172..14833478 | 41..347 | 99 | -> | Plus |
2R | 14833535..14833572 | 348..385 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:39 Download gff for
BS13954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10720442..10720460 | 22..40 | 100 | -> | Plus |
arm_2R | 10720677..10720983 | 41..347 | 99 | -> | Plus |
arm_2R | 10721040..10721077 | 348..385 | 100 | | Plus |
BS13954.pep Sequence
Translation from 16 to 384
> BS13954.pep
MFANHRLMLFCFCLGALTWASLAIEESTDIEEDVISIANQTQKVIRVHPQ
DLPPKKDTTGSQMNSPFIQVQTLRPSTAFGSSQRQYVDSKQMRKRRPRPA
KLLGGNVAASETQAAEATELGR*
BS13954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10205-PB | 122 | CG10205-PB | 1..122 | 1..122 | 622 | 100 | Plus |
CG10205-PA | 224 | CG10205-PA | 1..116 | 1..116 | 568 | 95.7 | Plus |