Clone BS13954 Report

Search the DGRC for BS13954

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG10205-RB
Protein status:BS13954.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13954.3prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS13954.3prime
ATGGTCTAGAAAGCTTCTAGCGTCCAAGTTCAGTTGCTTCTGCTGCTTGA
GTTTCACTGGCGGCCACATTTCCACCCAGCAGCTTGGCGGGACGAGGGCG
CCTCTTTCGCATCTGCTTGGAGTCCACGTACTGCCGCTGACTGGATCCGA
ATGCCGTTGACGGACGCAGTGTTTGCACCTGGATGAAGGGTGAGTTCATT
TGGCTGCCGGTGGTGTCTTTCTTGGGCGGTAGGTCCTGCGGATGCACGCG
GATCACCTTCTGCGTTTGGTTGGCTATGCTGATCACATCCTCCTCAATGT
CCGTGGACTCTTCGATGGCGAGGGATGCCCAGGTCAGTGCACCCAAGCAG
AAGCAGAAGAGCATTAGCCGATGATTGGCGAACATGTCGACTGATAACT

BS13954.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-PB 369 CG10205-RB 1..369 385..17 1820 99.7 Minus
CG10205-PA 675 CG10205-RA 1..331 385..55 1630 99.6 Minus
CG10205-PA 675 CG10205-RA 387..425 55..17 195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-RB 848 CG10205-RB 101..469 385..17 1830 99.7 Minus
CG10205-RA 904 CG10205-RA 101..431 385..55 1640 99.7 Minus
CG10205-RA 904 CG10205-RA 487..525 55..17 195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14833171..14833478 362..55 1525 99.7 Minus
2R 25286936 2R 14833534..14833572 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:01:23 has no hits.

BS13954.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:05 Download gff for BS13954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-PB 1..369 17..385 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:11 Download gff for BS13954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 101..469 17..385 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:30 Download gff for BS13954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 101..469 17..385 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:30 Download gff for BS13954.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14833172..14833478 55..361 99 -> Minus
2R 14833535..14833572 17..54 100   Minus
2R 14832932..14832955 362..385 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:11 Download gff for BS13954.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10720437..10720460 362..385 100 -> Minus
arm_2R 10720677..10720983 55..361 99 -> Minus
arm_2R 10721040..10721077 17..54 100   Minus

BS13954.5prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS13954.5prime
GAAGTTATCAGTCGACATGTTCGCCAATCATCGGCTAATGCTCTTCTGCT
TCTGCTTGGGTGCACTGACCTGGGCATCCCTCGCCATCGAAGAGTCCACG
GACATTGAGGAGGATGTGATCAGCATAGCCAACCAAACGCAGAAGGTGAT
CCGCGTGCATCCGCAGGACCTACCGCCCAAGAAAGACACCACCGGCAGCC
AAATGAACTCACCCTTCATCCAGGTGCAAACACTGCGTCCGTCAACGGCA
TTCGGATCCAGTCAGCGGCAGTACGTGGACTCCAAGCAGATGCGAAAGAG
GCGCCCTCGTCCCGCCAAGCTGCTGGGTGGAAATGTGGCCGCCAGTGAAA
CTCAAGCAGCAGAAGCAACTGAACTTGGACGCTAGAAGCTTTCTAGACC

BS13954.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-PB 369 CG10205-RB 1..369 17..385 1820 99.7 Plus
CG10205-PA 675 CG10205-RA 1..331 17..347 1630 99.6 Plus
CG10205-PA 675 CG10205-RA 387..425 347..385 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-RB 848 CG10205-RB 101..469 17..385 1830 99.7 Plus
CG10205-RA 904 CG10205-RA 101..431 17..347 1640 99.7 Plus
CG10205-RA 904 CG10205-RA 487..525 347..385 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14833171..14833478 40..347 1525 99.7 Plus
2R 25286936 2R 14833534..14833572 347..385 195 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:24:33 has no hits.

BS13954.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:05 Download gff for BS13954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-PB 1..369 17..385 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:25 Download gff for BS13954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 101..469 17..385 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:17 Download gff for BS13954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 101..469 17..385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:17 Download gff for BS13954.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14832932..14832955 17..40 100 -> Plus
2R 14833172..14833478 41..347 99 -> Plus
2R 14833535..14833572 348..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:25 Download gff for BS13954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10720437..10720460 17..40 100 -> Plus
arm_2R 10720677..10720983 41..347 99 -> Plus
arm_2R 10721040..10721077 348..385 100   Plus

BS13954.complete Sequence

401 bp assembled on 2006-11-01

GenBank Submission: FJ637564

> BS13954.complete
GAAGTTATCAGTCGACATGTTCGCCAATCATCGGCTAATGCTCTTCTGCT
TCTGCTTGGGTGCACTGACCTGGGCATCCCTCGCCATCGAAGAGTCCACG
GACATTGAGGAGGATGTGATCAGCATAGCCAACCAAACGCAGAAGGTGAT
CCGCGTGCATCCGCAGGACCTACCGCCCAAGAAAGACACCACCGGCAGCC
AAATGAACTCACCCTTCATCCAGGTGCAAACACTGCGTCCGTCAACGGCA
TTCGGATCCAGTCAGCGGCAGTACGTGGACTCCAAGCAGATGCGAAAGAG
GCGCCCTCGTCCCGCCAAGCTGCTGGGTGGAAATGTGGCCGCCAGTGAAA
CTCAAGCAGCAGAAGCAACTGAACTTGGACGCTAGAAGCTTTCTAGACCA
T

BS13954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-RB 369 CG10205-PB 1..369 17..385 1830 99.7 Plus
CG10205-RA 675 CG10205-PA 1..331 17..347 1640 99.7 Plus
CG10205-RA 675 CG10205-PA 387..425 347..385 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-RB 848 CG10205-RB 101..469 17..385 1830 99.7 Plus
CG10205-RA 904 CG10205-RA 101..431 17..347 1640 99.7 Plus
CG10205-RA 904 CG10205-RA 487..525 347..385 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14833171..14833478 40..347 1525 99.7 Plus
2R 25286936 2R 14833534..14833572 347..385 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:59:39 has no hits.

BS13954.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:42 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 1..369 17..385 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:12:03 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 100..468 17..385 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:39 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 106..469 22..385 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:42 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 100..468 17..385 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:31 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
CG10205-RB 106..469 22..385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:31 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14832937..14832955 22..40 100 -> Plus
2R 14833172..14833478 41..347 99 -> Plus
2R 14833535..14833572 348..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:39 Download gff for BS13954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10720442..10720460 22..40 100 -> Plus
arm_2R 10720677..10720983 41..347 99 -> Plus
arm_2R 10721040..10721077 348..385 100   Plus

BS13954.pep Sequence

Translation from 16 to 384

> BS13954.pep
MFANHRLMLFCFCLGALTWASLAIEESTDIEEDVISIANQTQKVIRVHPQ
DLPPKKDTTGSQMNSPFIQVQTLRPSTAFGSSQRQYVDSKQMRKRRPRPA
KLLGGNVAASETQAAEATELGR*

BS13954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10205-PB 122 CG10205-PB 1..122 1..122 622 100 Plus
CG10205-PA 224 CG10205-PA 1..116 1..116 568 95.7 Plus