Clone Sequence Records
BS13956.3prime Sequence
537 bp (528 high quality bases) assembled on 2006-10-13
> BS13956.3prime
ATGGTCTAGAAAGCTTTTACTTCCTGGGCTTGCCAGCGGCTGGCTTCTGG
CCGGGCTTCTTGCCAGCGGCTCCCTTGGCGCCAGCACCACCCTTGGTGAC
CTTGCCGGCACCGGCCTTGGTTCCCTTGGCTCCAGCAGCGGGCTTCTTCT
TGGGCTCGGGCTTGGCCTTGGGGGCCTTCACCGGCTTGACGAGCGCCTCG
CGCTGGCTCTTCAGGGCCTTGACGATCTTCTGCTCCTCGATGAGGAAGGC
GCGCACGATACGCTCGCGCAGGCAGCTGTGGCACAGCACTCCACCGTAGG
TCCTGGACACGGTCTTCAGGCGCTTGGACATGCGGGGGCGCTCGCTGGGG
CGGGAGGGGGTGATACCCTTCAACTTCTCCTTGCACTGGCCGCAACGGGG
CACGGTGGGGTTCTTCTTCACATACTGGTAAACCAGACGACCACCGGGCG
TGCGAACAATGCGCCGCTTGTTGGAGCGTGTGTTGTAGGACAGGCGTCTC
CGGAGCGTCAGACGTTGGACCATGTCGACTGATAACT
BS13956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9354-PB | 507 | RpL34b-RB | 1..507 | 523..17 | 2535 | 100 | Minus |
CG9354-PA | 507 | RpL34b-RA | 1..507 | 523..17 | 2535 | 100 | Minus |
CG6090-PA | 489 | RpL34a-RA | 160..329 | 364..195 | 425 | 90 | Minus |
CG6090-PB | 489 | RpL34a-RB | 160..329 | 364..195 | 425 | 90 | Minus |
CG6090-PA | 489 | RpL34a-RA | 31..149 | 493..375 | 245 | 88.2 | Minus |
CG6090-PB | 489 | RpL34a-RB | 31..149 | 493..375 | 245 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..555 | 523..16 | 2540 | 100 | Minus |
RpL34b-RC | 589 | CG9354-RC | 15..522 | 523..16 | 2540 | 100 | Minus |
RpL34b-RA | 771 | CG9354-RA | 197..704 | 523..16 | 2540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400436..9400878 | 16..458 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 26058635..26058917 | 176..458 | 830 | 86.2 | Plus |
3R | 32079331 | 3R | 9400942..9401006 | 459..523 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:54:18 has no hits.
BS13956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:06 Download gff for
BS13956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 17..523 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:25 Download gff for
BS13956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 13..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:51 Download gff for
BS13956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 13..531 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:51 Download gff for
BS13956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400432..9400878 | 13..458 | 99 | <- | Plus |
3R | 9400942..9401013 | 459..531 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:25 Download gff for
BS13956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226154..5226600 | 13..458 | 99 | <- | Plus |
arm_3R | 5226664..5226735 | 459..531 | 95 | | Plus |
BS13956.5prime Sequence
537 bp (537 high quality bases) assembled on 2006-10-13
> BS13956.5prime
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGTAAAAGCTTTCTAGACC
BS13956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9354-PB | 507 | RpL34b-RB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG9354-PA | 507 | RpL34b-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
CG6090-PA | 489 | RpL34a-RA | 160..329 | 176..345 | 425 | 90 | Plus |
CG6090-PB | 489 | RpL34a-RB | 160..329 | 176..345 | 425 | 90 | Plus |
CG6090-PA | 489 | RpL34a-RA | 31..149 | 47..165 | 245 | 88.2 | Plus |
CG6090-PB | 489 | RpL34a-RB | 31..149 | 47..165 | 245 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..555 | 17..524 | 2540 | 100 | Plus |
RpL34b-RC | 589 | CG9354-RC | 15..522 | 17..524 | 2540 | 100 | Plus |
RpL34b-RA | 771 | CG9354-RA | 197..704 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400436..9400878 | 524..82 | 2215 | 100 | Minus |
3R | 32079331 | 3R | 26058635..26058917 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 9400942..9401006 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:25:54 has no hits.
BS13956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:07 Download gff for
BS13956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9354-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:28 Download gff for
BS13956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 9..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:26 Download gff for
BS13956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 9..527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:26 Download gff for
BS13956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400432..9400878 | 82..527 | 99 | <- | Minus |
3R | 9400942..9401013 | 9..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:28 Download gff for
BS13956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226154..5226600 | 82..527 | 99 | <- | Minus |
arm_3R | 5226664..5226735 | 9..81 | 95 | | Minus |
BS13956.complete Sequence
539 bp assembled on 2006-11-01
GenBank Submission: FJ637565
> BS13956.complete
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGTAAAAGCTTTCTAGACCAT
BS13956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 507 | CG9354-PD | 1..507 | 17..523 | 2535 | 100 | Plus |
RpL34b-RC | 507 | CG9354-PC | 1..507 | 17..523 | 2535 | 100 | Plus |
RpL34b-RA | 507 | CG9354-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-RD | 622 | CG9354-RD | 48..555 | 17..524 | 2540 | 100 | Plus |
RpL34b-RC | 589 | CG9354-RC | 15..522 | 17..524 | 2540 | 100 | Plus |
RpL34b-RA | 771 | CG9354-RA | 197..704 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9400436..9400878 | 524..82 | 2215 | 100 | Minus |
3R | 32079331 | 3R | 26058635..26058917 | 364..82 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 9400942..9401006 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:29:52 has no hits.
BS13956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:22 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:12 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 9..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:31 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 197..701 | 17..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:22 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 190..708 | 9..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:41 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34b-RA | 197..701 | 17..521 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:41 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9400439..9400878 | 82..521 | 100 | <- | Minus |
3R | 9400942..9401006 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:31 Download gff for
BS13956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5226161..5226600 | 82..521 | 100 | <- | Minus |
arm_3R | 5226664..5226728 | 17..81 | 100 | | Minus |
BS13956.pep Sequence
Translation from 16 to 522
> BS13956.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKAPKAKPEPKKKPAAGAKGTKAGAGKVTKGGAGAK
GAAGKKPGQKPAAGKPRK*
BS13956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34b-PD | 168 | CG9354-PD | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PC | 168 | CG9354-PC | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PA | 168 | CG9354-PA | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34b-PB | 168 | CG9354-PB | 1..168 | 1..168 | 864 | 100 | Plus |
RpL34a-PC | 162 | CG6090-PC | 1..153 | 1..162 | 618 | 82.7 | Plus |