Clone BS13956 Report

Search the DGRC for BS13956

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptRpL34b-RA
Protein status:BS13956.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13956.3prime Sequence

537 bp (528 high quality bases) assembled on 2006-10-13

> BS13956.3prime
ATGGTCTAGAAAGCTTTTACTTCCTGGGCTTGCCAGCGGCTGGCTTCTGG
CCGGGCTTCTTGCCAGCGGCTCCCTTGGCGCCAGCACCACCCTTGGTGAC
CTTGCCGGCACCGGCCTTGGTTCCCTTGGCTCCAGCAGCGGGCTTCTTCT
TGGGCTCGGGCTTGGCCTTGGGGGCCTTCACCGGCTTGACGAGCGCCTCG
CGCTGGCTCTTCAGGGCCTTGACGATCTTCTGCTCCTCGATGAGGAAGGC
GCGCACGATACGCTCGCGCAGGCAGCTGTGGCACAGCACTCCACCGTAGG
TCCTGGACACGGTCTTCAGGCGCTTGGACATGCGGGGGCGCTCGCTGGGG
CGGGAGGGGGTGATACCCTTCAACTTCTCCTTGCACTGGCCGCAACGGGG
CACGGTGGGGTTCTTCTTCACATACTGGTAAACCAGACGACCACCGGGCG
TGCGAACAATGCGCCGCTTGTTGGAGCGTGTGTTGTAGGACAGGCGTCTC
CGGAGCGTCAGACGTTGGACCATGTCGACTGATAACT

BS13956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9354-PB 507 RpL34b-RB 1..507 523..17 2535 100 Minus
CG9354-PA 507 RpL34b-RA 1..507 523..17 2535 100 Minus
CG6090-PA 489 RpL34a-RA 160..329 364..195 425 90 Minus
CG6090-PB 489 RpL34a-RB 160..329 364..195 425 90 Minus
CG6090-PA 489 RpL34a-RA 31..149 493..375 245 88.2 Minus
CG6090-PB 489 RpL34a-RB 31..149 493..375 245 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..555 523..16 2540 100 Minus
RpL34b-RC 589 CG9354-RC 15..522 523..16 2540 100 Minus
RpL34b-RA 771 CG9354-RA 197..704 523..16 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400436..9400878 16..458 2215 100 Plus
3R 32079331 3R 26058635..26058917 176..458 830 86.2 Plus
3R 32079331 3R 9400942..9401006 459..523 325 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:54:18 has no hits.

BS13956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:06 Download gff for BS13956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 17..523 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:25 Download gff for BS13956.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 13..531 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:51 Download gff for BS13956.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 13..531 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:51 Download gff for BS13956.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9400432..9400878 13..458 99 <- Plus
3R 9400942..9401013 459..531 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:25 Download gff for BS13956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226154..5226600 13..458 99 <- Plus
arm_3R 5226664..5226735 459..531 95   Plus

BS13956.5prime Sequence

537 bp (537 high quality bases) assembled on 2006-10-13

> BS13956.5prime
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGTAAAAGCTTTCTAGACC

BS13956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9354-PB 507 RpL34b-RB 1..507 17..523 2535 100 Plus
CG9354-PA 507 RpL34b-RA 1..507 17..523 2535 100 Plus
CG6090-PA 489 RpL34a-RA 160..329 176..345 425 90 Plus
CG6090-PB 489 RpL34a-RB 160..329 176..345 425 90 Plus
CG6090-PA 489 RpL34a-RA 31..149 47..165 245 88.2 Plus
CG6090-PB 489 RpL34a-RB 31..149 47..165 245 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..555 17..524 2540 100 Plus
RpL34b-RC 589 CG9354-RC 15..522 17..524 2540 100 Plus
RpL34b-RA 771 CG9354-RA 197..704 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400436..9400878 524..82 2215 100 Minus
3R 32079331 3R 26058635..26058917 364..82 830 86.2 Minus
3R 32079331 3R 9400942..9401006 81..17 325 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:25:54 has no hits.

BS13956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:07 Download gff for BS13956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9354-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:28 Download gff for BS13956.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 9..527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:26 Download gff for BS13956.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 9..527 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:26 Download gff for BS13956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9400432..9400878 82..527 99 <- Minus
3R 9400942..9401013 9..81 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:28 Download gff for BS13956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226154..5226600 82..527 99 <- Minus
arm_3R 5226664..5226735 9..81 95   Minus

BS13956.complete Sequence

539 bp assembled on 2006-11-01

GenBank Submission: FJ637565

> BS13956.complete
GAAGTTATCAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGT
CCTACAACACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGT
CGTCTGGTTTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGG
CCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCCTCCCGCCCCAGCGAGC
GCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTCCAGGACCTACGGTGGA
GTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCGTGCGCGCCTTCCTCAT
CGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGCCAGCGCGAGGCGCTCG
TCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGAGCCCAAGAAGAAGCCC
GCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCGGCAAGGTCACCAAGGG
TGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAGCCCGGCCAGAAGCCAG
CCGCTGGCAAGCCCAGGAAGTAAAAGCTTTCTAGACCAT

BS13956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 507 CG9354-PD 1..507 17..523 2535 100 Plus
RpL34b-RC 507 CG9354-PC 1..507 17..523 2535 100 Plus
RpL34b-RA 507 CG9354-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..555 17..524 2540 100 Plus
RpL34b-RC 589 CG9354-RC 15..522 17..524 2540 100 Plus
RpL34b-RA 771 CG9354-RA 197..704 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400436..9400878 524..82 2215 100 Minus
3R 32079331 3R 26058635..26058917 364..82 830 86.2 Minus
3R 32079331 3R 9400942..9401006 81..17 325 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:29:52 has no hits.

BS13956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:22 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:12 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 9..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:31 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 197..701 17..521 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:22 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..708 9..527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:41 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 197..701 17..521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:41 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9400439..9400878 82..521 100 <- Minus
3R 9400942..9401006 17..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:31 Download gff for BS13956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226161..5226600 82..521 100 <- Minus
arm_3R 5226664..5226728 17..81 100   Minus

BS13956.pep Sequence

Translation from 16 to 522

> BS13956.pep
MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK
LKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRERIVRAFLIEEQKI
VKALKSQREALVKPVKAPKAKPEPKKKPAAGAKGTKAGAGKVTKGGAGAK
GAAGKKPGQKPAAGKPRK*

BS13956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-PD 168 CG9354-PD 1..168 1..168 864 100 Plus
RpL34b-PC 168 CG9354-PC 1..168 1..168 864 100 Plus
RpL34b-PA 168 CG9354-PA 1..168 1..168 864 100 Plus
RpL34b-PB 168 CG9354-PB 1..168 1..168 864 100 Plus
RpL34a-PC 162 CG6090-PC 1..153 1..162 618 82.7 Plus