Clone Sequence Records
BS13961.5prime Sequence
573 bp (503 high quality bases) assembled on 2006-10-13
> BS13961.5prime
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATTGAAAGCTTTCTAGACC
BS13961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12023-PB | 543 | GV1-RB | 1..543 | 17..559 | 2715 | 100 | Plus |
CG12023-PA | 1065 | GV1-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 801 | CG12023-RB | 186..729 | 17..560 | 2720 | 100 | Plus |
GV1-RA | 1196 | CG12023-RA | 186..686 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1821807..1822141 | 226..560 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 1821213..1821426 | 19..232 | 1040 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:01 has no hits.
BS13961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:10 Download gff for
BS13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12023-PB | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:21 Download gff for
BS13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 9..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:35 Download gff for
BS13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 9..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:35 Download gff for
BS13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1821807..1822141 | 226..560 | 100 | | Plus |
3L | 1821209..1821419 | 12..225 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:21 Download gff for
BS13961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1821209..1821419 | 12..225 | 98 | -> | Plus |
arm_3L | 1821807..1822141 | 226..560 | 100 | | Plus |
BS13961.3prime Sequence
573 bp (524 high quality bases) assembled on 2006-10-13
> BS13961.3prime
ATGGTCTAGAAAGCTTTCAATAGCGCAGATATCGCTTTCGATTCTCGTAT
TGCCTTACATAGTTCCAGGGGTAAGCGTACTTGGCCTTCTCATAGGCCTT
GTACTTCTTGGTCTTCGCATTGTATTTGCCCTGCAGCTTATCAGACACAA
TTGCCGTATACTTGATGCCCACTCCGGGCACATACTGGGCGGCCAGTCCC
GGCACGGAGGTCACTCCTCCGCTGTAGGAATTGCTGGCCAGCTGGCCGTA
GTTGTTGCCCTTGGGCGGCAGGTTGTTGTAGTTGGGCGGAGCATATGGTC
CGGCGGGAATCGCCCAGGTCCTTGGTCTCGAAGGCGGTGGCAACACGTAG
ACATAGGGATTGGGGTTGGGTACGTCATCGCTCTGGTCCTCCCAGACGGG
CGCTGGATCCCGGTATGGTTTCCTCGGCGGCTGCGGAGTGGTGCGCGGCG
GAGGTGGTGCTATGGGTCCTGTGTTGGTGCCCCAGTCCACCCGGATGGCC
TGCGCGTGGAGGCTGAAACTGGCGAATGTGGCGACTAGCAGCAGGCAAGG
AGTGAGCATGTCGACTGATAACT
BS13961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12023-PB | 543 | GV1-RB | 1..543 | 559..17 | 2690 | 99.8 | Minus |
CG12023-PA | 1065 | GV1-RA | 1..501 | 559..59 | 2480 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 801 | CG12023-RB | 186..729 | 559..16 | 2705 | 99.8 | Minus |
GV1-RA | 1196 | CG12023-RA | 186..686 | 559..59 | 2490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1821807..1822141 | 350..16 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 1821213..1821426 | 557..344 | 1025 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:38:35 has no hits.
BS13961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:10 Download gff for
BS13961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12023-PB | 1..543 | 17..559 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:48 Download gff for
BS13961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:32 Download gff for
BS13961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 180..729 | 16..567 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:32 Download gff for
BS13961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1821209..1821419 | 351..564 | 98 | -> | Minus |
3L | 1821807..1822141 | 16..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:48 Download gff for
BS13961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1821209..1821419 | 351..564 | 98 | -> | Minus |
arm_3L | 1821807..1822141 | 16..350 | 100 | | Minus |
BS13961.complete Sequence
575 bp assembled on 2006-11-01
GenBank Submission: FJ637566
> BS13961.complete
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATTGAAAGCTTTCTAGACCAT
BS13961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 543 | CG12023-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
GV1-RA | 882 | CG12023-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-RB | 801 | CG12023-RB | 186..729 | 17..560 | 2720 | 100 | Plus |
GV1-RA | 1196 | CG12023-RA | 186..686 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1821807..1822141 | 226..560 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 1821213..1821426 | 19..232 | 1040 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:38 has no hits.
BS13961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:14 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:18 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 179..728 | 9..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:46 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 186..727 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:14 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 179..728 | 9..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:12 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GV1-RB | 186..727 | 17..558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:12 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1821212..1821419 | 17..225 | 99 | -> | Plus |
3L | 1821807..1822139 | 226..558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:46 Download gff for
BS13961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1821212..1821419 | 17..225 | 99 | -> | Plus |
arm_3L | 1821807..1822139 | 226..558 | 100 | | Plus |
BS13961.pep Sequence
Translation from 16 to 558
> BS13961.pep
MLTPCLLLVATVASFSLHAQAIRVDWGTNTGPIAPPPPRTTPQPPRKPYR
DPAPVWEDQSDDVPNPNPYVYVLPPPSRPRTWAIPAGPYAPPNYNNLPPK
GNNYGQLASNSYSGGVTSVPGLAAQYVPGVGIKYTAIVSDKLQGKYNAKT
KKYKAYEKAKYAYPWNYVRQYENRKRYLRY*
BS13961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GV1-PB | 180 | CG12023-PB | 1..180 | 1..180 | 998 | 100 | Plus |
GV1-PA | 293 | CG12023-PA | 1..180 | 1..180 | 937 | 93.9 | Plus |