Clone BS13961 Report

Search the DGRC for BS13961

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptGV1-RB
Protein status:BS13961.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13961.5prime Sequence

573 bp (503 high quality bases) assembled on 2006-10-13

> BS13961.5prime
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATTGAAAGCTTTCTAGACC

BS13961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12023-PB 543 GV1-RB 1..543 17..559 2715 100 Plus
CG12023-PA 1065 GV1-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 801 CG12023-RB 186..729 17..560 2720 100 Plus
GV1-RA 1196 CG12023-RA 186..686 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1821807..1822141 226..560 1675 100 Plus
3L 28110227 3L 1821213..1821426 19..232 1040 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 11:15:01 has no hits.

BS13961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:10 Download gff for BS13961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12023-PB 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:21 Download gff for BS13961.5prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 9..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:35 Download gff for BS13961.5prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 9..560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:35 Download gff for BS13961.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1821807..1822141 226..560 100   Plus
3L 1821209..1821419 12..225 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:21 Download gff for BS13961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1821209..1821419 12..225 98 -> Plus
arm_3L 1821807..1822141 226..560 100   Plus

BS13961.3prime Sequence

573 bp (524 high quality bases) assembled on 2006-10-13

> BS13961.3prime
ATGGTCTAGAAAGCTTTCAATAGCGCAGATATCGCTTTCGATTCTCGTAT
TGCCTTACATAGTTCCAGGGGTAAGCGTACTTGGCCTTCTCATAGGCCTT
GTACTTCTTGGTCTTCGCATTGTATTTGCCCTGCAGCTTATCAGACACAA
TTGCCGTATACTTGATGCCCACTCCGGGCACATACTGGGCGGCCAGTCCC
GGCACGGAGGTCACTCCTCCGCTGTAGGAATTGCTGGCCAGCTGGCCGTA
GTTGTTGCCCTTGGGCGGCAGGTTGTTGTAGTTGGGCGGAGCATATGGTC
CGGCGGGAATCGCCCAGGTCCTTGGTCTCGAAGGCGGTGGCAACACGTAG
ACATAGGGATTGGGGTTGGGTACGTCATCGCTCTGGTCCTCCCAGACGGG
CGCTGGATCCCGGTATGGTTTCCTCGGCGGCTGCGGAGTGGTGCGCGGCG
GAGGTGGTGCTATGGGTCCTGTGTTGGTGCCCCAGTCCACCCGGATGGCC
TGCGCGTGGAGGCTGAAACTGGCGAATGTGGCGACTAGCAGCAGGCAAGG
AGTGAGCATGTCGACTGATAACT

BS13961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12023-PB 543 GV1-RB 1..543 559..17 2690 99.8 Minus
CG12023-PA 1065 GV1-RA 1..501 559..59 2480 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 801 CG12023-RB 186..729 559..16 2705 99.8 Minus
GV1-RA 1196 CG12023-RA 186..686 559..59 2490 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1821807..1822141 350..16 1675 100 Minus
3L 28110227 3L 1821213..1821426 557..344 1025 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:38:35 has no hits.

BS13961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:10 Download gff for BS13961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12023-PB 1..543 17..559 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:48 Download gff for BS13961.3prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 16..567 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:32 Download gff for BS13961.3prime
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 180..729 16..567 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:32 Download gff for BS13961.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1821209..1821419 351..564 98 -> Minus
3L 1821807..1822141 16..350 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:48 Download gff for BS13961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1821209..1821419 351..564 98 -> Minus
arm_3L 1821807..1822141 16..350 100   Minus

BS13961.complete Sequence

575 bp assembled on 2006-11-01

GenBank Submission: FJ637566

> BS13961.complete
GAAGTTATCAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAG
TCGCCAGTTTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACC
AACACAGGACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCC
GAGGAAACCATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATG
ACGTACCCAACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGA
CCAAGGACCTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAA
CAACCTGCCGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCT
ACAGCGGAGGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCC
GGAGTGGGCATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAA
ATACAATGCGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACG
CTTACCCCTGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTG
CGCTATTGAAAGCTTTCTAGACCAT

BS13961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 543 CG12023-PB 1..543 17..559 2715 100 Plus
GV1-RA 882 CG12023-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-RB 801 CG12023-RB 186..729 17..560 2720 100 Plus
GV1-RA 1196 CG12023-RA 186..686 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1821807..1822141 226..560 1675 100 Plus
3L 28110227 3L 1821213..1821426 19..232 1040 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 01:07:38 has no hits.

BS13961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:14 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:18 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 179..728 9..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:46 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 186..727 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:14 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 179..728 9..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:12 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
GV1-RB 186..727 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:12 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1821212..1821419 17..225 99 -> Plus
3L 1821807..1822139 226..558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:46 Download gff for BS13961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1821212..1821419 17..225 99 -> Plus
arm_3L 1821807..1822139 226..558 100   Plus

BS13961.pep Sequence

Translation from 16 to 558

> BS13961.pep
MLTPCLLLVATVASFSLHAQAIRVDWGTNTGPIAPPPPRTTPQPPRKPYR
DPAPVWEDQSDDVPNPNPYVYVLPPPSRPRTWAIPAGPYAPPNYNNLPPK
GNNYGQLASNSYSGGVTSVPGLAAQYVPGVGIKYTAIVSDKLQGKYNAKT
KKYKAYEKAKYAYPWNYVRQYENRKRYLRY*

BS13961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
GV1-PB 180 CG12023-PB 1..180 1..180 998 100 Plus
GV1-PA 293 CG12023-PA 1..180 1..180 937 93.9 Plus