Clone BS13962 Report

Search the DGRC for BS13962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCoVb-RA
Protein status:BS13962.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13962.3prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS13962.3prime
ATGGTCTAGAAAGCTTTTAAACAGCTGCCTTCTCCACCAGCTTGAACCAA
TGGCCGCACTCACAACGTTTCTGGTTGCCCTTCTGCAGCCACATCCATTG
CACGTAGGTCTGATCCTCTTCGCAGATGCAGCCCACAATGCGAGCATCGA
AGGCCGATGGAATAAGGTTGGGGTTCTCCTTGGTGCCGGCGCCCCGCTTG
AAGACCTTCATGTCGAAGGGGTTATCATTGCCGGCGGCCTTAAGCAGCAG
CTCGCGCTTCTCGATACCAGTGGCGTGCTCCAAAGGATCGTTCATCATTT
TGCAGAAGCGCACGGGCGTGTAGGCAACATTCTGGCGTGCGGCGGCACGG
AGCGCCATGCGTCCACAGATCGATGCCATGTCGACTGATAACT

BS13962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11015-PA 363 CG11015-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..467 379..16 1820 100 Minus
CoVb-RA 729 CG11015-RA 104..467 379..16 1820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 297..123 875 100 Minus
2L 23513712 2L 6558939..6559046 123..16 540 100 Minus
2L 23513712 2L 6557903..6557984 379..298 410 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:36:08 has no hits.

BS13962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for BS13962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:00 Download gff for BS13962.3prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 7..379 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:31 Download gff for BS13962.3prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 7..379 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:31 Download gff for BS13962.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6557903..6557984 298..379 100 -> Minus
2L 6558418..6558591 124..297 100 -> Minus
2L 6558939..6559053 7..123 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:00 Download gff for BS13962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6557903..6557984 298..379 100 -> Minus
arm_2L 6558418..6558591 124..297 100 -> Minus
arm_2L 6558939..6559053 7..123 96   Minus

BS13962.5prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS13962.5prime
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTTAAAAGCTTTCTAGACC

BS13962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11015-PA 363 CG11015-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..467 17..380 1820 100 Plus
CoVb-RA 729 CG11015-RA 104..467 17..380 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 99..273 875 100 Plus
2L 23513712 2L 6558939..6559046 273..380 540 100 Plus
2L 23513712 2L 6557903..6557984 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:15:09 has no hits.

BS13962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for BS13962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11015-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:22 Download gff for BS13962.5prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 17..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:55 Download gff for BS13962.5prime
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..474 17..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:55 Download gff for BS13962.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6558939..6559053 273..389 96   Plus
2L 6557903..6557984 17..98 100 -> Plus
2L 6558418..6558591 99..272 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:22 Download gff for BS13962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6557903..6557984 17..98 100 -> Plus
arm_2L 6558418..6558591 99..272 100 -> Plus
arm_2L 6558939..6559053 273..389 96   Plus

BS13962.complete Sequence

395 bp assembled on 2006-11-01

GenBank Submission: FJ637567

> BS13962.complete
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTTAAAAGCTTTCTAGACCAT

BS13962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 363 CG11015-PB 1..363 17..379 1815 100 Plus
CoVb-RA 363 CG11015-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-RB 570 CG11015-RB 104..467 17..380 1820 100 Plus
CoVb-RA 729 CG11015-RA 104..467 17..380 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6558418..6558592 99..273 875 100 Plus
2L 23513712 2L 6558939..6559046 273..380 540 100 Plus
2L 23513712 2L 6557903..6557984 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:55:53 has no hits.

BS13962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:00 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:42 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 104..474 17..389 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:38 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..464 17..377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:00 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
CG11015-RA 104..474 17..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:32 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
CoVb-RA 104..464 17..377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:32 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6557903..6557984 17..98 100 -> Plus
2L 6558418..6558591 99..272 100 -> Plus
2L 6558939..6559043 273..377 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:38 Download gff for BS13962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6557903..6557984 17..98 100 -> Plus
arm_2L 6558418..6558591 99..272 100 -> Plus
arm_2L 6558939..6559043 273..377 100   Plus

BS13962.pep Sequence

Translation from 16 to 378

> BS13962.pep
MASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAG
NDNPFDMKVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQK
GNQKRCECGHWFKLVEKAAV*

BS13962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CoVb-PB 120 CG11015-PB 1..120 1..120 651 100 Plus
CoVb-PA 120 CG11015-PA 1..120 1..120 651 100 Plus
CG11043-PA 154 CG11043-PA 29..148 1..114 223 41.8 Plus