Clone Sequence Records
BS13962.3prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS13962.3prime
ATGGTCTAGAAAGCTTTTAAACAGCTGCCTTCTCCACCAGCTTGAACCAA
TGGCCGCACTCACAACGTTTCTGGTTGCCCTTCTGCAGCCACATCCATTG
CACGTAGGTCTGATCCTCTTCGCAGATGCAGCCCACAATGCGAGCATCGA
AGGCCGATGGAATAAGGTTGGGGTTCTCCTTGGTGCCGGCGCCCCGCTTG
AAGACCTTCATGTCGAAGGGGTTATCATTGCCGGCGGCCTTAAGCAGCAG
CTCGCGCTTCTCGATACCAGTGGCGTGCTCCAAAGGATCGTTCATCATTT
TGCAGAAGCGCACGGGCGTGTAGGCAACATTCTGGCGTGCGGCGGCACGG
AGCGCCATGCGTCCACAGATCGATGCCATGTCGACTGATAACT
BS13962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11015-PA | 363 | CG11015-RA | 1..363 | 379..17 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..467 | 379..16 | 1820 | 100 | Minus |
CoVb-RA | 729 | CG11015-RA | 104..467 | 379..16 | 1820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 297..123 | 875 | 100 | Minus |
2L | 23513712 | 2L | 6558939..6559046 | 123..16 | 540 | 100 | Minus |
2L | 23513712 | 2L | 6557903..6557984 | 379..298 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:36:08 has no hits.
BS13962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for
BS13962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 17..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:00 Download gff for
BS13962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 7..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:31 Download gff for
BS13962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 7..379 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:31 Download gff for
BS13962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6557903..6557984 | 298..379 | 100 | -> | Minus |
2L | 6558418..6558591 | 124..297 | 100 | -> | Minus |
2L | 6558939..6559053 | 7..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:00 Download gff for
BS13962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6557903..6557984 | 298..379 | 100 | -> | Minus |
arm_2L | 6558418..6558591 | 124..297 | 100 | -> | Minus |
arm_2L | 6558939..6559053 | 7..123 | 96 | | Minus |
BS13962.5prime Sequence
393 bp (393 high quality bases) assembled on 2006-10-13
> BS13962.5prime
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTTAAAAGCTTTCTAGACC
BS13962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11015-PA | 363 | CG11015-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..467 | 17..380 | 1820 | 100 | Plus |
CoVb-RA | 729 | CG11015-RA | 104..467 | 17..380 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 99..273 | 875 | 100 | Plus |
2L | 23513712 | 2L | 6558939..6559046 | 273..380 | 540 | 100 | Plus |
2L | 23513712 | 2L | 6557903..6557984 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:09 has no hits.
BS13962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for
BS13962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-PA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:22 Download gff for
BS13962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 17..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:55 Download gff for
BS13962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..474 | 17..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:55 Download gff for
BS13962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6558939..6559053 | 273..389 | 96 | | Plus |
2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:22 Download gff for
BS13962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
arm_2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
arm_2L | 6558939..6559053 | 273..389 | 96 | | Plus |
BS13962.complete Sequence
395 bp assembled on 2006-11-01
GenBank Submission: FJ637567
> BS13962.complete
GAAGTTATCAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTG
CCGCCGCACGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATG
ATGAACGATCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCT
GCTTAAGGCCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGC
GGGGCGCCGGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGAT
GCTCGCATTGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATG
GATGTGGCTGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGT
TCAAGCTGGTGGAGAAGGCAGCTGTTTAAAAGCTTTCTAGACCAT
BS13962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 363 | CG11015-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
CoVb-RA | 363 | CG11015-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-RB | 570 | CG11015-RB | 104..467 | 17..380 | 1820 | 100 | Plus |
CoVb-RA | 729 | CG11015-RA | 104..467 | 17..380 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6558418..6558592 | 99..273 | 875 | 100 | Plus |
2L | 23513712 | 2L | 6558939..6559046 | 273..380 | 540 | 100 | Plus |
2L | 23513712 | 2L | 6557903..6557984 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:55:53 has no hits.
BS13962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:00 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 1..363 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:42 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 104..474 | 17..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:38 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..464 | 17..377 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:00 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11015-RA | 104..474 | 17..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:32 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoVb-RA | 104..464 | 17..377 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:32 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
2L | 6558939..6559043 | 273..377 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:38 Download gff for
BS13962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6557903..6557984 | 17..98 | 100 | -> | Plus |
arm_2L | 6558418..6558591 | 99..272 | 100 | -> | Plus |
arm_2L | 6558939..6559043 | 273..377 | 100 | | Plus |
BS13962.pep Sequence
Translation from 16 to 378
> BS13962.pep
MASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAG
NDNPFDMKVFKRGAGTKENPNLIPSAFDARIVGCICEEDQTYVQWMWLQK
GNQKRCECGHWFKLVEKAAV*
BS13962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoVb-PB | 120 | CG11015-PB | 1..120 | 1..120 | 651 | 100 | Plus |
CoVb-PA | 120 | CG11015-PA | 1..120 | 1..120 | 651 | 100 | Plus |
CG11043-PA | 154 | CG11043-PA | 29..148 | 1..114 | 223 | 41.8 | Plus |