Clone Sequence Records
BS13963.3prime Sequence
522 bp (488 high quality bases) assembled on 2006-10-13
> BS13963.3prime
ATGGTCTAGAAAGCTTCTAAATTTGGCTAAAATAGTTTCCATGTGGCCAA
TTCACGCGCTTGGCACTCAAGATCTTGAGTATATTCTCAACCACATCGGT
ACTGGAGTTGGTGCCGCCAATATCTGGCGTGCGAATGGCATCGTTGACAA
TGGTCTGGTAGACGGCCTCCTGAATGACATTGGCGTGCTCCTTGTGGCCC
AGATGGTTCAACATATCGATACTGGCACTGATCATGGCCACAGGGTTGGC
GATATTCTTGCCGGCAATGGCGGTTCCTGTGTTACGGGTGCCAGGCTCAA
AGATGGCGTAATGGTCACCGTAGTTCCTGCCGGATATGAGGCCAGCTCCG
CCCATCAAACCGCAAAGAACATTGGACACGATGGTGCCGTACAGATTGGT
CATGTTCATCACGTCGAACTGGTGAGGATTCGACACGGACTGCATGCAGG
TGTTGTCGATAATCATGTTGTTGTGCTCCAGTTCGGGATAGTCCTTGTGC
ACACGGTTGGCAACCTCCAGGA
BS13963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PA | 1209 | CG5028-RA | 704..1209 | 522..17 | 2505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1934 | CG5028-RB | 826..1331 | 522..17 | 2515 | 99.8 | Minus |
CG5028-RA | 1407 | CG5028-RA | 826..1331 | 522..17 | 2515 | 99.8 | Minus |
CG5028-RD | 1742 | CG5028-RD | 826..1301 | 522..47 | 2365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681834..25682045 | 522..311 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 25682105..25682291 | 310..124 | 920 | 99.5 | Minus |
3R | 32079331 | 3R | 25682353..25682432 | 126..47 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:55:20 has no hits.
BS13963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for
BS13963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 705..1209 | 17..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:08 Download gff for
BS13963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 827..1339 | 9..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:06 Download gff for
BS13963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 827..1339 | 9..521 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:06 Download gff for
BS13963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25681835..25682045 | 311..521 | 100 | -> | Minus |
3R | 25682105..25682291 | 124..310 | 99 | -> | Minus |
3R | 25682356..25682431 | 48..123 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:08 Download gff for
BS13963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21507557..21507767 | 311..521 | 100 | -> | Minus |
arm_3R | 21507827..21508013 | 124..310 | 99 | -> | Minus |
arm_3R | 21508078..21508153 | 48..123 | 100 | -> | Minus |
BS13963.5prime Sequence
525 bp (492 high quality bases) assembled on 2006-10-13
> BS13963.5prime
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCG
BS13963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PA | 1209 | CG5028-RA | 1..509 | 17..525 | 2545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RD | 1742 | CG5028-RD | 122..631 | 16..525 | 2550 | 100 | Plus |
CG5028-RC | 1608 | CG5028-RC | 122..631 | 16..525 | 2550 | 100 | Plus |
CG5028-RB | 1934 | CG5028-RB | 122..631 | 16..525 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681265..25681639 | 151..525 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 25681121..25681199 | 74..152 | 395 | 100 | Plus |
3R | 32079331 | 3R | 25680966..25681024 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:11:33 has no hits.
BS13963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for
BS13963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-PA | 1..509 | 17..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:20 Download gff for
BS13963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 122..631 | 16..525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:29 Download gff for
BS13963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 122..631 | 16..525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:29 Download gff for
BS13963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25680966..25681023 | 16..73 | 100 | -> | Plus |
3R | 25681121..25681198 | 74..151 | 100 | -> | Plus |
3R | 25681266..25681639 | 152..525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:20 Download gff for
BS13963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21506688..21506745 | 16..73 | 100 | -> | Plus |
arm_3R | 21506843..21506920 | 74..151 | 100 | -> | Plus |
arm_3R | 21506988..21507361 | 152..525 | 100 | | Plus |
BS13963.complete Sequence
1241 bp assembled on 2010-05-13
GenBank Submission: KX806382
> BS13963.complete
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCACAACAACATGATTATCGACAACACCTGCATGC
AGTCCGTGTCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTG
TACGGCACCATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGG
CCTCATATCCGGCAGGAACTACGGTGACCATTACGCCATCTTTGAGCCTG
GCACCCGTAACACAGGAACCGCCATTGCCGGCAAGAATATCGCCAACCCT
GTGGCCATGATCAGTGCCAGTATCGATATGTTGAACCATCTGGGCCACAA
GGAGCACGCCAATGTCATTCAGGAGGCCGTCTACCAGACCATTGTCAACG
ATGCCATTCGCACGCCAGATATTGGCGGCACCAACTCCAGTACCGATGTG
GTTGAGAATATACTCAAGATCTTGAGTGCCAAGCGCGTGAATTGGCCACA
TGGAAACTATTTTAGCCAAATTTAGAAGCTTTCTAGACCAT
BS13963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1209 | CG5028-PB | 1..1209 | 17..1225 | 6030 | 99.9 | Plus |
CG5028-RA | 1209 | CG5028-PA | 1..1209 | 17..1225 | 6030 | 99.9 | Plus |
CG5028-RD | 1182 | CG5028-PD | 1..1179 | 17..1195 | 5880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-RB | 1934 | CG5028-RB | 122..1331 | 16..1225 | 6035 | 99.9 | Plus |
CG5028-RA | 1407 | CG5028-RA | 122..1331 | 16..1225 | 6035 | 99.9 | Plus |
CG5028-RD | 1742 | CG5028-RD | 122..1301 | 16..1195 | 5885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25681265..25682045 | 151..931 | 3905 | 100 | Plus |
3R | 32079331 | 3R | 25682105..25682291 | 932..1118 | 920 | 99.5 | Plus |
3R | 32079331 | 3R | 25682353..25682432 | 1116..1195 | 400 | 100 | Plus |
3R | 32079331 | 3R | 25681121..25681199 | 74..152 | 395 | 100 | Plus |
3R | 32079331 | 3R | 25680966..25681024 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:25 has no hits.
BS13963.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:09 Download gff for
BS13963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RB | 150..1358 | 17..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:18 Download gff for
BS13963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 123..1331 | 17..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:36 Download gff for
BS13963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5028-RA | 123..1331 | 17..1225 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:36 Download gff for
BS13963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25682356..25682431 | 1119..1194 | 100 | -> | Plus |
3R | 25683058..25683088 | 1195..1225 | 100 | | Plus |
3R | 25682105..25682291 | 932..1118 | 99 | -> | Plus |
3R | 25680967..25681023 | 17..73 | 100 | -> | Plus |
3R | 25681121..25681198 | 74..151 | 100 | -> | Plus |
3R | 25681266..25682045 | 152..931 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:18 Download gff for
BS13963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21506689..21506745 | 17..73 | 100 | -> | Plus |
arm_3R | 21506843..21506920 | 74..151 | 100 | -> | Plus |
arm_3R | 21506988..21507767 | 152..931 | 100 | -> | Plus |
arm_3R | 21507827..21508013 | 932..1118 | 99 | -> | Plus |
arm_3R | 21508078..21508153 | 1119..1194 | 100 | -> | Plus |
arm_3R | 21508780..21508810 | 1195..1225 | 100 | | Plus |
BS13963.pep Sequence
Translation from 16 to 1224
> BS13963.pep
MALRLTQRLLQTQTPFLTRGYPLLVTKEKTEDVAHTKSALQKKVTGTDIP
SAQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEG
NDDLDYAITSIKRNGVALKGNIETKSQSLTEVSRNVAIRNELDLYVNVVH
CKSYPGIPARHHDIDVVLIRQNTDGEYAMLEHESVPGIVESMKVVTVENA
ERVARYAFEFARQNNRKKVTTIHKANIMKLSDGLFLEVANRVHKDYPELE
HNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGLMGGAGLISGR
NYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV
IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKILSAKRVNWPHGNYFS
QI*
BS13963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5028-PB | 402 | CG5028-PB | 1..402 | 1..402 | 2086 | 100 | Plus |
CG5028-PA | 402 | CG5028-PA | 1..402 | 1..402 | 2086 | 100 | Plus |
CG5028-PD | 393 | CG5028-PD | 1..393 | 1..393 | 2033 | 100 | Plus |
CG5028-PC | 392 | CG5028-PC | 1..392 | 1..392 | 2022 | 100 | Plus |
CG6439-PB | 370 | CG6439-PB | 22..370 | 35..387 | 791 | 43.7 | Plus |