Clone BS13963 Report

Search the DGRC for BS13963

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG5028-RA
Protein status:BS13963.pep: full length peptide match
Sequenced Size:1241

Clone Sequence Records

BS13963.3prime Sequence

522 bp (488 high quality bases) assembled on 2006-10-13

> BS13963.3prime
ATGGTCTAGAAAGCTTCTAAATTTGGCTAAAATAGTTTCCATGTGGCCAA
TTCACGCGCTTGGCACTCAAGATCTTGAGTATATTCTCAACCACATCGGT
ACTGGAGTTGGTGCCGCCAATATCTGGCGTGCGAATGGCATCGTTGACAA
TGGTCTGGTAGACGGCCTCCTGAATGACATTGGCGTGCTCCTTGTGGCCC
AGATGGTTCAACATATCGATACTGGCACTGATCATGGCCACAGGGTTGGC
GATATTCTTGCCGGCAATGGCGGTTCCTGTGTTACGGGTGCCAGGCTCAA
AGATGGCGTAATGGTCACCGTAGTTCCTGCCGGATATGAGGCCAGCTCCG
CCCATCAAACCGCAAAGAACATTGGACACGATGGTGCCGTACAGATTGGT
CATGTTCATCACGTCGAACTGGTGAGGATTCGACACGGACTGCATGCAGG
TGTTGTCGATAATCATGTTGTTGTGCTCCAGTTCGGGATAGTCCTTGTGC
ACACGGTTGGCAACCTCCAGGA

BS13963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PA 1209 CG5028-RA 704..1209 522..17 2505 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1934 CG5028-RB 826..1331 522..17 2515 99.8 Minus
CG5028-RA 1407 CG5028-RA 826..1331 522..17 2515 99.8 Minus
CG5028-RD 1742 CG5028-RD 826..1301 522..47 2365 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681834..25682045 522..311 1060 100 Minus
3R 32079331 3R 25682105..25682291 310..124 920 99.5 Minus
3R 32079331 3R 25682353..25682432 126..47 400 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:55:20 has no hits.

BS13963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:11 Download gff for BS13963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 705..1209 17..521 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:08 Download gff for BS13963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 827..1339 9..521 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:06 Download gff for BS13963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 827..1339 9..521 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:06 Download gff for BS13963.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25681835..25682045 311..521 100 -> Minus
3R 25682105..25682291 124..310 99 -> Minus
3R 25682356..25682431 48..123 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:08 Download gff for BS13963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21507557..21507767 311..521 100 -> Minus
arm_3R 21507827..21508013 124..310 99 -> Minus
arm_3R 21508078..21508153 48..123 100 -> Minus

BS13963.5prime Sequence

525 bp (492 high quality bases) assembled on 2006-10-13

> BS13963.5prime
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCG

BS13963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PA 1209 CG5028-RA 1..509 17..525 2545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RD 1742 CG5028-RD 122..631 16..525 2550 100 Plus
CG5028-RC 1608 CG5028-RC 122..631 16..525 2550 100 Plus
CG5028-RB 1934 CG5028-RB 122..631 16..525 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681265..25681639 151..525 1875 100 Plus
3R 32079331 3R 25681121..25681199 74..152 395 100 Plus
3R 32079331 3R 25680966..25681024 16..74 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:11:33 has no hits.

BS13963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for BS13963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-PA 1..509 17..525 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:37:20 Download gff for BS13963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 122..631 16..525 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:29 Download gff for BS13963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 122..631 16..525 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:29 Download gff for BS13963.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25680966..25681023 16..73 100 -> Plus
3R 25681121..25681198 74..151 100 -> Plus
3R 25681266..25681639 152..525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:37:20 Download gff for BS13963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21506688..21506745 16..73 100 -> Plus
arm_3R 21506843..21506920 74..151 100 -> Plus
arm_3R 21506988..21507361 152..525 100   Plus

BS13963.complete Sequence

1241 bp assembled on 2010-05-13

GenBank Submission: KX806382

> BS13963.complete
GAAGTTATCAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGA
CGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAG
AAGACCGAGGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCAC
GGGCACCGATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCA
TGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAG
ATCTTCCGGTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGA
TCCCTCCACCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTA
AGAGGAACGGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCC
TTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTA
CGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATC
ACGACATTGACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCC
ATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGT
GACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCC
GCCAAAACAATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATG
AAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGA
CTATCCCGAACTGGAGCACAACAACATGATTATCGACAACACCTGCATGC
AGTCCGTGTCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTG
TACGGCACCATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGG
CCTCATATCCGGCAGGAACTACGGTGACCATTACGCCATCTTTGAGCCTG
GCACCCGTAACACAGGAACCGCCATTGCCGGCAAGAATATCGCCAACCCT
GTGGCCATGATCAGTGCCAGTATCGATATGTTGAACCATCTGGGCCACAA
GGAGCACGCCAATGTCATTCAGGAGGCCGTCTACCAGACCATTGTCAACG
ATGCCATTCGCACGCCAGATATTGGCGGCACCAACTCCAGTACCGATGTG
GTTGAGAATATACTCAAGATCTTGAGTGCCAAGCGCGTGAATTGGCCACA
TGGAAACTATTTTAGCCAAATTTAGAAGCTTTCTAGACCAT

BS13963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1209 CG5028-PB 1..1209 17..1225 6030 99.9 Plus
CG5028-RA 1209 CG5028-PA 1..1209 17..1225 6030 99.9 Plus
CG5028-RD 1182 CG5028-PD 1..1179 17..1195 5880 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-RB 1934 CG5028-RB 122..1331 16..1225 6035 99.9 Plus
CG5028-RA 1407 CG5028-RA 122..1331 16..1225 6035 99.9 Plus
CG5028-RD 1742 CG5028-RD 122..1301 16..1195 5885 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25681265..25682045 151..931 3905 100 Plus
3R 32079331 3R 25682105..25682291 932..1118 920 99.5 Plus
3R 32079331 3R 25682353..25682432 1116..1195 400 100 Plus
3R 32079331 3R 25681121..25681199 74..152 395 100 Plus
3R 32079331 3R 25680966..25681024 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:16:25 has no hits.

BS13963.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:09 Download gff for BS13963.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RB 150..1358 17..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:18 Download gff for BS13963.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 123..1331 17..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:36 Download gff for BS13963.complete
Subject Subject Range Query Range Percent Splice Strand
CG5028-RA 123..1331 17..1225 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:36 Download gff for BS13963.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25682356..25682431 1119..1194 100 -> Plus
3R 25683058..25683088 1195..1225 100   Plus
3R 25682105..25682291 932..1118 99 -> Plus
3R 25680967..25681023 17..73 100 -> Plus
3R 25681121..25681198 74..151 100 -> Plus
3R 25681266..25682045 152..931 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:18 Download gff for BS13963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21506689..21506745 17..73 100 -> Plus
arm_3R 21506843..21506920 74..151 100 -> Plus
arm_3R 21506988..21507767 152..931 100 -> Plus
arm_3R 21507827..21508013 932..1118 99 -> Plus
arm_3R 21508078..21508153 1119..1194 100 -> Plus
arm_3R 21508780..21508810 1195..1225 100   Plus

BS13963.pep Sequence

Translation from 16 to 1224

> BS13963.pep
MALRLTQRLLQTQTPFLTRGYPLLVTKEKTEDVAHTKSALQKKVTGTDIP
SAQYGGRHAVTMLPGGGIGPELMGYVREIFRYCGAPIDFEVIDIDPSTEG
NDDLDYAITSIKRNGVALKGNIETKSQSLTEVSRNVAIRNELDLYVNVVH
CKSYPGIPARHHDIDVVLIRQNTDGEYAMLEHESVPGIVESMKVVTVENA
ERVARYAFEFARQNNRKKVTTIHKANIMKLSDGLFLEVANRVHKDYPELE
HNNMIIDNTCMQSVSNPHQFDVMNMTNLYGTIVSNVLCGLMGGAGLISGR
NYGDHYAIFEPGTRNTGTAIAGKNIANPVAMISASIDMLNHLGHKEHANV
IQEAVYQTIVNDAIRTPDIGGTNSSTDVVENILKILSAKRVNWPHGNYFS
QI*

BS13963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5028-PB 402 CG5028-PB 1..402 1..402 2086 100 Plus
CG5028-PA 402 CG5028-PA 1..402 1..402 2086 100 Plus
CG5028-PD 393 CG5028-PD 1..393 1..393 2033 100 Plus
CG5028-PC 392 CG5028-PC 1..392 1..392 2022 100 Plus
CG6439-PB 370 CG6439-PB 22..370 35..387 791 43.7 Plus