Clone Sequence Records
BS13964.3prime Sequence
467 bp (454 high quality bases) assembled on 2006-10-13
> BS13964.3prime
ATGGTCTAGAAAGCTTTTATCCTGGTGGCCACTGCATCTGGCGGCCGCCG
AGGAAGTGCAAATGCAAGTGGTAAACTGACTGGGCGCCGTGCTTGCCATT
GTTGATGACCACGCGGTAGCCATCCGCGAGGCCGAGCTCCTTGGCCACCT
TGCGGCCCACCAGCATGAGATGTCCCAGCAGATCGGCATCTCCATCCTCG
GCTAGCGAGAGTTGGGCAATTGGCTTGCGAGGAATCACGAGGAAGTGGGT
TGGTGCCTGGGGCGCCACATCGTGGAAGGCAACGCATTTATCATCCTCGT
GGATAAATTTGCATGGGATCTCCTTGCGCAAAATCTTGCCGAAAATGGTG
TCTTCACTGGCGGCTGCCGTTTGCGATTTTTCCACTTCGCTTGCCATTCT
AGCACTGCAGCTTGCTATTTGGCGAGAGCTGAAAACACGAAAGAAATTCC
GGCCGGTTGACAAGAAC
BS13964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PA | 453 | CG2862-RA | 3..453 | 467..17 | 2255 | 100 | Minus |
CG2862-PB | 381 | CG2862-RB | 1..381 | 397..17 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 19..469 | 467..17 | 2255 | 100 | Minus |
CG2862-RA | 644 | CG2862-RA | 19..469 | 467..17 | 2255 | 100 | Minus |
CG2862-RB | 556 | CG2862-RB | 63..477 | 431..17 | 2075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770729 | 286..17 | 1350 | 100 | Minus |
2L | 23513712 | 2L | 2770256..2770400 | 431..287 | 725 | 100 | Minus |
2L | 23513712 | 2L | 2770153..2770191 | 467..429 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:17 has no hits.
BS13964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for
BS13964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 3..453 | 17..467 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:55 Download gff for
BS13964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 19..474 | 13..467 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:09 Download gff for
BS13964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 19..474 | 13..467 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:09 Download gff for
BS13964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770153..2770191 | 429..467 | 100 | -> | Minus |
2L | 2770259..2770400 | 287..428 | 100 | -> | Minus |
2L | 2770460..2770734 | 13..286 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:55 Download gff for
BS13964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770153..2770191 | 429..467 | 100 | -> | Minus |
arm_2L | 2770460..2770734 | 13..286 | 99 | | Minus |
arm_2L | 2770259..2770400 | 287..428 | 100 | -> | Minus |
BS13964.5prime Sequence
484 bp (451 high quality bases) assembled on 2006-10-13
> BS13964.5prime
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCACGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTTGCACTTCCTCGGCGGCCGCCAGA
TGCAGTGGCCACCAGGATAAAAGCTTTCTAGACC
BS13964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PA | 453 | CG2862-RA | 1..410 | 17..426 | 2025 | 99.7 | Plus |
CG2862-PB | 381 | CG2862-RB | 1..338 | 89..426 | 1665 | 99.7 | Plus |
CG2862-PA | 453 | CG2862-RA | 408..453 | 425..470 | 230 | 100 | Plus |
CG2862-PB | 381 | CG2862-RB | 336..381 | 425..470 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 17..469 | 17..470 | 2230 | 99.6 | Plus |
CG2862-RA | 644 | CG2862-RA | 17..469 | 17..470 | 2230 | 99.6 | Plus |
CG2862-RB | 556 | CG2862-RB | 63..477 | 55..470 | 2040 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770729 | 200..470 | 1290 | 99.3 | Plus |
2L | 23513712 | 2L | 2770256..2770400 | 55..199 | 725 | 100 | Plus |
2L | 23513712 | 2L | 2770151..2770191 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:26:19 has no hits.
BS13964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for
BS13964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-PA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:29 Download gff for
BS13964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..474 | 12..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:28 Download gff for
BS13964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 14..474 | 12..474 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:28 Download gff for
BS13964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770148..2770191 | 12..57 | 95 | -> | Plus |
2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
2L | 2770460..2770734 | 200..474 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:29 Download gff for
BS13964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770148..2770191 | 12..57 | 95 | -> | Plus |
arm_2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
arm_2L | 2770460..2770734 | 200..474 | 98 | | Plus |
BS13964.complete Sequence
485 bp assembled on 2006-11-01
GenBank Submission: FJ637568
> BS13964.complete
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGATAAAAGCTTTCTAGACCAT
BS13964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 453 | CG2862-PC | 1..453 | 17..469 | 2265 | 100 | Plus |
CG2862-RA | 453 | CG2862-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
CG2862-RB | 381 | CG2862-PB | 1..381 | 89..469 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-RC | 548 | CG2862-RC | 17..469 | 17..469 | 2265 | 100 | Plus |
CG2862-RA | 644 | CG2862-RA | 17..469 | 17..469 | 2265 | 100 | Plus |
CG2862-RB | 556 | CG2862-RB | 63..477 | 55..469 | 2075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2770460..2770729 | 200..469 | 1350 | 100 | Plus |
2L | 23513712 | 2L | 2770256..2770400 | 55..199 | 725 | 100 | Plus |
2L | 23513712 | 2L | 2770151..2770191 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:52 has no hits.
BS13964.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:59 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:39 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 12..472 | 12..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:20 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 22..467 | 22..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:59 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 12..472 | 12..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:56 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2862-RA | 22..467 | 22..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:56 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2770156..2770191 | 22..57 | 100 | -> | Plus |
2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
2L | 2770460..2770727 | 200..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:20 Download gff for
BS13964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2770156..2770191 | 22..57 | 100 | -> | Plus |
arm_2L | 2770259..2770400 | 58..199 | 100 | -> | Plus |
arm_2L | 2770460..2770727 | 200..467 | 100 | | Plus |
BS13964.pep Sequence
Translation from 16 to 468
> BS13964.pep
MFLSTGRNFFRVFSSRQIASCSARMASEVEKSQTAAASEDTIFGKILRKE
IPCKFIHEDDKCVAFHDVAPQAPTHFLVIPRKPIAQLSLAEDGDADLLGH
LMLVGRKVAKELGLADGYRVVINNGKHGAQSVYHLHLHFLGGRQMQWPPG
*
BS13964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2862-PC | 150 | CG2862-PC | 1..150 | 1..150 | 785 | 100 | Plus |
CG2862-PA | 150 | CG2862-PA | 1..150 | 1..150 | 785 | 100 | Plus |
CG2862-PB | 126 | CG2862-PB | 1..126 | 25..150 | 665 | 100 | Plus |