Clone BS13964 Report

Search the DGRC for BS13964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG2862-RA
Protein status:BS13964.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13964.3prime Sequence

467 bp (454 high quality bases) assembled on 2006-10-13

> BS13964.3prime
ATGGTCTAGAAAGCTTTTATCCTGGTGGCCACTGCATCTGGCGGCCGCCG
AGGAAGTGCAAATGCAAGTGGTAAACTGACTGGGCGCCGTGCTTGCCATT
GTTGATGACCACGCGGTAGCCATCCGCGAGGCCGAGCTCCTTGGCCACCT
TGCGGCCCACCAGCATGAGATGTCCCAGCAGATCGGCATCTCCATCCTCG
GCTAGCGAGAGTTGGGCAATTGGCTTGCGAGGAATCACGAGGAAGTGGGT
TGGTGCCTGGGGCGCCACATCGTGGAAGGCAACGCATTTATCATCCTCGT
GGATAAATTTGCATGGGATCTCCTTGCGCAAAATCTTGCCGAAAATGGTG
TCTTCACTGGCGGCTGCCGTTTGCGATTTTTCCACTTCGCTTGCCATTCT
AGCACTGCAGCTTGCTATTTGGCGAGAGCTGAAAACACGAAAGAAATTCC
GGCCGGTTGACAAGAAC

BS13964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PA 453 CG2862-RA 3..453 467..17 2255 100 Minus
CG2862-PB 381 CG2862-RB 1..381 397..17 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 19..469 467..17 2255 100 Minus
CG2862-RA 644 CG2862-RA 19..469 467..17 2255 100 Minus
CG2862-RB 556 CG2862-RB 63..477 431..17 2075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770729 286..17 1350 100 Minus
2L 23513712 2L 2770256..2770400 431..287 725 100 Minus
2L 23513712 2L 2770153..2770191 467..429 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:58:17 has no hits.

BS13964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for BS13964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 3..453 17..467 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:55 Download gff for BS13964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 19..474 13..467 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:09 Download gff for BS13964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 19..474 13..467 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:09 Download gff for BS13964.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2770153..2770191 429..467 100 -> Minus
2L 2770259..2770400 287..428 100 -> Minus
2L 2770460..2770734 13..286 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:55 Download gff for BS13964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770153..2770191 429..467 100 -> Minus
arm_2L 2770460..2770734 13..286 99   Minus
arm_2L 2770259..2770400 287..428 100 -> Minus

BS13964.5prime Sequence

484 bp (451 high quality bases) assembled on 2006-10-13

> BS13964.5prime
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCACGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTTGCACTTCCTCGGCGGCCGCCAGA
TGCAGTGGCCACCAGGATAAAAGCTTTCTAGACC

BS13964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PA 453 CG2862-RA 1..410 17..426 2025 99.7 Plus
CG2862-PB 381 CG2862-RB 1..338 89..426 1665 99.7 Plus
CG2862-PA 453 CG2862-RA 408..453 425..470 230 100 Plus
CG2862-PB 381 CG2862-RB 336..381 425..470 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 17..469 17..470 2230 99.6 Plus
CG2862-RA 644 CG2862-RA 17..469 17..470 2230 99.6 Plus
CG2862-RB 556 CG2862-RB 63..477 55..470 2040 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770729 200..470 1290 99.3 Plus
2L 23513712 2L 2770256..2770400 55..199 725 100 Plus
2L 23513712 2L 2770151..2770191 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:26:19 has no hits.

BS13964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:12 Download gff for BS13964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-PA 1..453 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:29 Download gff for BS13964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..474 12..474 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:28 Download gff for BS13964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 14..474 12..474 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:28 Download gff for BS13964.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2770148..2770191 12..57 95 -> Plus
2L 2770259..2770400 58..199 100 -> Plus
2L 2770460..2770734 200..474 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:29 Download gff for BS13964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770148..2770191 12..57 95 -> Plus
arm_2L 2770259..2770400 58..199 100 -> Plus
arm_2L 2770460..2770734 200..474 98   Plus

BS13964.complete Sequence

485 bp assembled on 2006-11-01

GenBank Submission: FJ637568

> BS13964.complete
GAAGTTATCAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTG
TTTTCAGCTCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAA
GTGGAAAAATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAA
GATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAAT
GCGTTGCCTTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTG
ATTCCTCGCAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGC
CGATCTGCTGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGC
TCGGCCTCGCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGC
GCCCAGTCAGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGAT
GCAGTGGCCACCAGGATAAAAGCTTTCTAGACCAT

BS13964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 453 CG2862-PC 1..453 17..469 2265 100 Plus
CG2862-RA 453 CG2862-PA 1..453 17..469 2265 100 Plus
CG2862-RB 381 CG2862-PB 1..381 89..469 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-RC 548 CG2862-RC 17..469 17..469 2265 100 Plus
CG2862-RA 644 CG2862-RA 17..469 17..469 2265 100 Plus
CG2862-RB 556 CG2862-RB 63..477 55..469 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2770460..2770729 200..469 1350 100 Plus
2L 23513712 2L 2770256..2770400 55..199 725 100 Plus
2L 23513712 2L 2770151..2770191 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:04:52 has no hits.

BS13964.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:59 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:39 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 12..472 12..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:20 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 22..467 22..467 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:59 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 12..472 12..473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:56 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
CG2862-RA 22..467 22..467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:56 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2770156..2770191 22..57 100 -> Plus
2L 2770259..2770400 58..199 100 -> Plus
2L 2770460..2770727 200..467 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:20 Download gff for BS13964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2770156..2770191 22..57 100 -> Plus
arm_2L 2770259..2770400 58..199 100 -> Plus
arm_2L 2770460..2770727 200..467 100   Plus

BS13964.pep Sequence

Translation from 16 to 468

> BS13964.pep
MFLSTGRNFFRVFSSRQIASCSARMASEVEKSQTAAASEDTIFGKILRKE
IPCKFIHEDDKCVAFHDVAPQAPTHFLVIPRKPIAQLSLAEDGDADLLGH
LMLVGRKVAKELGLADGYRVVINNGKHGAQSVYHLHLHFLGGRQMQWPPG
*

BS13964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2862-PC 150 CG2862-PC 1..150 1..150 785 100 Plus
CG2862-PA 150 CG2862-PA 1..150 1..150 785 100 Plus
CG2862-PB 126 CG2862-PB 1..126 25..150 665 100 Plus