Clone Sequence Records
BS13969.3prime Sequence
552 bp (552 high quality bases) assembled on 2006-10-13
> BS13969.3prime
ATGGTCTAGAAAGCTTTCAATCTCGGGAGTCCTCCTCGCTGCCGCTTACG
TGTGTGTAGAGGGCCAAGTCGTAGAACTGCCAGCGCTGCGGCTGACCTTC
GTCCACTCGGTAGCTGAGACATCGTGTCTCGAACAGGTCGGCCTGCTTCT
CCTGGCAGGAAACGATGGGATGCCCGTAGCCAAAGCACACCTCCTTGGTG
TTGAAGTAGATTTTGCCAAGAGCCAGGGAGTGTCCGTTTCGCAGAGCGGT
GAGGCAGTTCCGGAAGGCCGACTCGCAGGCACACGAGAATATGGGGAAAA
ACCCGTCGTTTCTCAGGCCAAAGGCTTCCTCCAGCGGCGGAATCTTCTCC
TCACAGTTGTCGTGCGCCCGGCAGCACGTGTCCACTTCGCGCTCAGTGCC
CAGGTCATCGTAGTTGGCTGCTATGTTCCCGGGTCCACACCACTTTGTGC
CCGGAACTGTAATGCTCAATCCCGCAGCCGCATGGCTGGCATAGATCAGC
GTTAGGAGAACAGTAAGAAAAGCGGCACGCGAAAGCATGTCGACTGATAA
CT
BS13969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-PA | 522 | CG30503-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 1133..1655 | 538..16 | 2615 | 100 | Minus |
CG30503-RA | 741 | CG30503-RA | 32..554 | 538..16 | 2615 | 100 | Minus |
kappaB-Ras-RB | 1842 | CG1669-RB | 1133..1655 | 538..16 | 2615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7444011..7444285 | 16..290 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 7444349..7444596 | 291..538 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:57:28 has no hits.
BS13969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:16 Download gff for
BS13969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:21 Download gff for
BS13969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RA | 26..561 | 4..545 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:51 Download gff for
BS13969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RB | 1127..1662 | 4..545 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:51 Download gff for
BS13969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7444004..7444285 | 4..290 | 98 | <- | Plus |
2R | 7444349..7444602 | 291..545 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:21 Download gff for
BS13969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3331509..3331790 | 4..290 | 98 | <- | Plus |
arm_2R | 3331854..3332107 | 291..545 | 98 | | Plus |
BS13969.5prime Sequence
552 bp (552 high quality bases) assembled on 2006-10-13
> BS13969.5prime
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATTGAAAGCTTTCTAGA
CC
BS13969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-PA | 522 | CG30503-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 1133..1655 | 17..539 | 2615 | 100 | Plus |
CG30503-RA | 741 | CG30503-RA | 32..554 | 17..539 | 2615 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 1133..1655 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7444011..7444285 | 539..265 | 1375 | 100 | Minus |
2R | 25286936 | 2R | 7444349..7444596 | 264..17 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:33 has no hits.
BS13969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:16 Download gff for
BS13969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:02 Download gff for
BS13969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RA | 26..561 | 10..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:19 Download gff for
BS13969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RB | 1127..1662 | 10..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:19 Download gff for
BS13969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7444004..7444285 | 265..551 | 98 | <- | Minus |
2R | 7444349..7444602 | 10..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:02 Download gff for
BS13969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3331509..3331790 | 265..551 | 98 | <- | Minus |
arm_2R | 3331854..3332107 | 10..264 | 98 | | Minus |
BS13969.complete Sequence
554 bp assembled on 2006-11-01
GenBank Submission: FJ637569
> BS13969.complete
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATTGAAAGCTTTCTAGA
CCAT
BS13969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 522 | CG30503-PB | 1..522 | 17..538 | 2610 | 100 | Plus |
CG30503-RA | 522 | CG30503-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 1133..1655 | 17..539 | 2615 | 100 | Plus |
CG30503-RA | 741 | CG30503-RA | 32..554 | 17..539 | 2615 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 1133..1655 | 17..539 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7444011..7444285 | 539..265 | 1375 | 100 | Minus |
2R | 25286936 | 2R | 7444349..7444596 | 264..17 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:02:26 has no hits.
BS13969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:30 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:22 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 1096..1631 | 10..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:01 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RA | 32..552 | 17..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:30 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 1096..1631 | 10..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:19 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RB | 1133..1653 | 17..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:19 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7444013..7444285 | 265..537 | 100 | <- | Minus |
2R | 7444349..7444596 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:01 Download gff for
BS13969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3331518..3331790 | 265..537 | 100 | <- | Minus |
arm_2R | 3331854..3332101 | 17..264 | 100 | | Minus |
BS13969.pep Sequence
Translation from 16 to 537
> BS13969.pep
MLSRAAFLTVLLTLIYASHAAAGLSITVPGTKWCGPGNIAANYDDLGTER
EVDTCCRAHDNCEEKIPPLEEAFGLRNDGFFPIFSCACESAFRNCLTALR
NGHSLALGKIYFNTKEVCFGYGHPIVSCQEKQADLFETRCLSYRVDEGQP
QRWQFYDLALYTHVSGSEEDSRD*
BS13969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-PB | 173 | CG30503-PB | 1..173 | 1..173 | 942 | 100 | Plus |
CG30503-PA | 173 | CG30503-PA | 1..173 | 1..173 | 942 | 100 | Plus |
sPLA2-PC | 186 | CG11124-PC | 43..180 | 26..162 | 396 | 50 | Plus |
sPLA2-PA | 186 | CG11124-PA | 43..180 | 26..162 | 396 | 50 | Plus |
CG3009-PD | 239 | CG3009-PD | 92..196 | 16..119 | 225 | 42.9 | Plus |