Clone BS13969 Report

Search the DGRC for BS13969

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG30503-RA
Protein status:BS13969.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13969.3prime Sequence

552 bp (552 high quality bases) assembled on 2006-10-13

> BS13969.3prime
ATGGTCTAGAAAGCTTTCAATCTCGGGAGTCCTCCTCGCTGCCGCTTACG
TGTGTGTAGAGGGCCAAGTCGTAGAACTGCCAGCGCTGCGGCTGACCTTC
GTCCACTCGGTAGCTGAGACATCGTGTCTCGAACAGGTCGGCCTGCTTCT
CCTGGCAGGAAACGATGGGATGCCCGTAGCCAAAGCACACCTCCTTGGTG
TTGAAGTAGATTTTGCCAAGAGCCAGGGAGTGTCCGTTTCGCAGAGCGGT
GAGGCAGTTCCGGAAGGCCGACTCGCAGGCACACGAGAATATGGGGAAAA
ACCCGTCGTTTCTCAGGCCAAAGGCTTCCTCCAGCGGCGGAATCTTCTCC
TCACAGTTGTCGTGCGCCCGGCAGCACGTGTCCACTTCGCGCTCAGTGCC
CAGGTCATCGTAGTTGGCTGCTATGTTCCCGGGTCCACACCACTTTGTGC
CCGGAACTGTAATGCTCAATCCCGCAGCCGCATGGCTGGCATAGATCAGC
GTTAGGAGAACAGTAAGAAAAGCGGCACGCGAAAGCATGTCGACTGATAA
CT

BS13969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PA 522 CG30503-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1655 538..16 2615 100 Minus
CG30503-RA 741 CG30503-RA 32..554 538..16 2615 100 Minus
kappaB-Ras-RB 1842 CG1669-RB 1133..1655 538..16 2615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444011..7444285 16..290 1375 100 Plus
2R 25286936 2R 7444349..7444596 291..538 1240 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:57:28 has no hits.

BS13969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:16 Download gff for BS13969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:21 Download gff for BS13969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 26..561 4..545 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:51 Download gff for BS13969.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1127..1662 4..545 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:51 Download gff for BS13969.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7444004..7444285 4..290 98 <- Plus
2R 7444349..7444602 291..545 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:21 Download gff for BS13969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331509..3331790 4..290 98 <- Plus
arm_2R 3331854..3332107 291..545 98   Plus

BS13969.5prime Sequence

552 bp (552 high quality bases) assembled on 2006-10-13

> BS13969.5prime
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATTGAAAGCTTTCTAGA
CC

BS13969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PA 522 CG30503-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1655 17..539 2615 100 Plus
CG30503-RA 741 CG30503-RA 32..554 17..539 2615 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 1133..1655 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444011..7444285 539..265 1375 100 Minus
2R 25286936 2R 7444349..7444596 264..17 1240 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:11:33 has no hits.

BS13969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:16 Download gff for BS13969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:02 Download gff for BS13969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 26..561 10..551 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:19 Download gff for BS13969.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1127..1662 10..551 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:19 Download gff for BS13969.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7444004..7444285 265..551 98 <- Minus
2R 7444349..7444602 10..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:02 Download gff for BS13969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331509..3331790 265..551 98 <- Minus
arm_2R 3331854..3332107 10..264 98   Minus

BS13969.complete Sequence

554 bp assembled on 2006-11-01

GenBank Submission: FJ637569

> BS13969.complete
GAAGTTATCAGTCGACATGCTTTCGCGTGCCGCTTTTCTTACTGTTCTCC
TAACGCTGATCTATGCCAGCCATGCGGCTGCGGGATTGAGCATTACAGTT
CCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCAGCCAACTACGATGA
CCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCGGGCGCACGACAACT
GTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTGGCCTGAGAAACGAC
GGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCGGCCTTCCGGAACTG
CCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCTTGGCAAAATCTACT
TCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATCCCATCGTTTCCTGC
CAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGTCTCAGCTACCGAGT
GGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGACTTGGCCCTCTACA
CACACGTAAGCGGCAGCGAGGAGGACTCCCGAGATTGAAAGCTTTCTAGA
CCAT

BS13969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 522 CG30503-PB 1..522 17..538 2610 100 Plus
CG30503-RA 522 CG30503-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 1133..1655 17..539 2615 100 Plus
CG30503-RA 741 CG30503-RA 32..554 17..539 2615 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 1133..1655 17..539 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7444011..7444285 539..265 1375 100 Minus
2R 25286936 2R 7444349..7444596 264..17 1240 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:02:26 has no hits.

BS13969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:30 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:22 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1096..1631 10..551 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:01 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RA 32..552 17..537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:30 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 1096..1631 10..551 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:19 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1133..1653 17..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:19 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7444013..7444285 265..537 100 <- Minus
2R 7444349..7444596 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:01 Download gff for BS13969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3331518..3331790 265..537 100 <- Minus
arm_2R 3331854..3332101 17..264 100   Minus

BS13969.pep Sequence

Translation from 16 to 537

> BS13969.pep
MLSRAAFLTVLLTLIYASHAAAGLSITVPGTKWCGPGNIAANYDDLGTER
EVDTCCRAHDNCEEKIPPLEEAFGLRNDGFFPIFSCACESAFRNCLTALR
NGHSLALGKIYFNTKEVCFGYGHPIVSCQEKQADLFETRCLSYRVDEGQP
QRWQFYDLALYTHVSGSEEDSRD*

BS13969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-PB 173 CG30503-PB 1..173 1..173 942 100 Plus
CG30503-PA 173 CG30503-PA 1..173 1..173 942 100 Plus
sPLA2-PC 186 CG11124-PC 43..180 26..162 396 50 Plus
sPLA2-PA 186 CG11124-PA 43..180 26..162 396 50 Plus
CG3009-PD 239 CG3009-PD 92..196 16..119 225 42.9 Plus