Clone BS13971 Report

Search the DGRC for BS13971

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG9350-RA
Protein status:BS13971.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13971.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13971.3prime
ATGGTCTAGAAAGCTTTTACTCCTTTGGCTTTTCCGTGGTCCAGTTCTTG
GGAGGATCGGCCATGATGGTCCAGTCGTTTCCGGCAATGTTCAGACCACC
ATACTGCTTGATCGGTGTGTTTGGGAAGAACTCCCAGCCCTGTTCAATGG
ACATCTTCTTGATGACACCAGCGATGCCCAGGAAGAGGCCGGCGCACAGA
CCAGCTACGTGGTTGTGTTTCCAGGCTCCAAAGACGCCGCCAGCCGCAAA
ACCGCCGATCAGGTAGTTGATTTTATCGTCCTTGCCGCGCGCATTTGTGG
CCACCAGGGTGGTCAGAGTGAACGCCGTGGCCATGCCCATCAGCGGACCC
GTGTTGTAGGCGAAACGGCCCAGTGTGGGCAGATATCCTTGCGGCTTGGA
GAGCGTCAGGACGTCGAACATGGACCAGGCCACGCCGGCGGATACCGCGT
ACTTGTTGGTGGCCACGATCTTGCCAAAGGCATCCTCGCCATCGGGATGG
TCGTAGTATTTCGAACGGAGCAGCGACATGTCGACTGATAACT

BS13971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 513 CG9350-RA 1..513 529..17 2565 100 Minus
CG9350-PB 513 CG9350-RB 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..603 530..16 2575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 530..273 1290 100 Minus
2R 25286936 2R 21025815..21025977 178..16 815 100 Minus
2R 25286936 2R 21025661..21025756 272..177 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:55:27 has no hits.

BS13971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:17 Download gff for BS13971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PB 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:31 Download gff for BS13971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..603 16..537 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:02 Download gff for BS13971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..603 16..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:02 Download gff for BS13971.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21025341..21025603 273..537 98 -> Minus
2R 21025661..21025755 178..272 100 -> Minus
2R 21025816..21025977 16..177 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:31 Download gff for BS13971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16913321..16913482 16..177 100   Minus
arm_2R 16912846..16913108 273..537 98 -> Minus
arm_2R 16913166..16913260 178..272 100 -> Minus

BS13971.5prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13971.5prime
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGTAAAAGCTTTCTAGACC

BS13971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 513 CG9350-RA 1..513 17..529 2565 100 Plus
CG9350-PB 513 CG9350-RB 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..603 16..530 2575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 16..273 1290 100 Plus
2R 25286936 2R 21025815..21025977 368..530 815 100 Plus
2R 25286936 2R 21025661..21025756 274..369 480 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:11:36 has no hits.

BS13971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:17 Download gff for BS13971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-PB 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:04 Download gff for BS13971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..603 9..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:30 Download gff for BS13971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 81..603 9..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:30 Download gff for BS13971.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21025341..21025603 9..273 98 -> Plus
2R 21025661..21025755 274..368 100 -> Plus
2R 21025816..21025977 369..530 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:04 Download gff for BS13971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16912846..16913108 9..273 98 -> Plus
arm_2R 16913166..16913260 274..368 100 -> Plus
arm_2R 16913321..16913482 369..530 100   Plus

BS13971.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637570

> BS13971.complete
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGTAAAAGCTTTCTAGACCAT

BS13971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 513 CG9350-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-RA 712 CG9350-RA 89..603 16..530 2575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21025346..21025603 16..273 1290 100 Plus
2R 25286936 2R 21025815..21025977 368..530 815 100 Plus
2R 25286936 2R 21025661..21025756 274..369 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:39:38 has no hits.

BS13971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:52 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:52 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 79..601 9..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:06 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 90..600 17..527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:52 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 79..601 9..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:25 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
CG9350-RA 90..600 17..527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:25 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21025816..21025974 369..527 100   Plus
2R 21025347..21025603 17..273 100 -> Plus
2R 21025661..21025755 274..368 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:06 Download gff for BS13971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16912852..16913108 17..273 100 -> Plus
arm_2R 16913166..16913260 274..368 100 -> Plus
arm_2R 16913321..16913479 369..527 100   Plus

BS13971.pep Sequence

Translation from 16 to 528

> BS13971.pep
MSLLRSKYYDHPDGEDAFGKIVATNKYAVSAGVAWSMFDVLTLSKPQGYL
PTLGRFAYNTGPLMGMATAFTLTTLVATNARGKDDKINYLIGGFAAGGVF
GAWKHNHVAGLCAGLFLGIAGVIKKMSIEQGWEFFPNTPIKQYGGLNIAG
NDWTIMADPPKNWTTEKPKE*

BS13971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9350-PA 170 CG9350-PA 1..170 1..170 917 100 Plus