Clone Sequence Records
BS13971.3prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13971.3prime
ATGGTCTAGAAAGCTTTTACTCCTTTGGCTTTTCCGTGGTCCAGTTCTTG
GGAGGATCGGCCATGATGGTCCAGTCGTTTCCGGCAATGTTCAGACCACC
ATACTGCTTGATCGGTGTGTTTGGGAAGAACTCCCAGCCCTGTTCAATGG
ACATCTTCTTGATGACACCAGCGATGCCCAGGAAGAGGCCGGCGCACAGA
CCAGCTACGTGGTTGTGTTTCCAGGCTCCAAAGACGCCGCCAGCCGCAAA
ACCGCCGATCAGGTAGTTGATTTTATCGTCCTTGCCGCGCGCATTTGTGG
CCACCAGGGTGGTCAGAGTGAACGCCGTGGCCATGCCCATCAGCGGACCC
GTGTTGTAGGCGAAACGGCCCAGTGTGGGCAGATATCCTTGCGGCTTGGA
GAGCGTCAGGACGTCGAACATGGACCAGGCCACGCCGGCGGATACCGCGT
ACTTGTTGGTGGCCACGATCTTGCCAAAGGCATCCTCGCCATCGGGATGG
TCGTAGTATTTCGAACGGAGCAGCGACATGTCGACTGATAACT
BS13971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 513 | CG9350-RA | 1..513 | 529..17 | 2565 | 100 | Minus |
CG9350-PB | 513 | CG9350-RB | 1..513 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..603 | 530..16 | 2575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 530..273 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 21025815..21025977 | 178..16 | 815 | 100 | Minus |
2R | 25286936 | 2R | 21025661..21025756 | 272..177 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:55:27 has no hits.
BS13971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:17 Download gff for
BS13971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PB | 1..513 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:31 Download gff for
BS13971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..603 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:02 Download gff for
BS13971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..603 | 16..537 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:02 Download gff for
BS13971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025341..21025603 | 273..537 | 98 | -> | Minus |
2R | 21025661..21025755 | 178..272 | 100 | -> | Minus |
2R | 21025816..21025977 | 16..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:31 Download gff for
BS13971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16913321..16913482 | 16..177 | 100 | | Minus |
arm_2R | 16912846..16913108 | 273..537 | 98 | -> | Minus |
arm_2R | 16913166..16913260 | 178..272 | 100 | -> | Minus |
BS13971.5prime Sequence
543 bp (543 high quality bases) assembled on 2006-10-13
> BS13971.5prime
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGTAAAAGCTTTCTAGACC
BS13971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 513 | CG9350-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
CG9350-PB | 513 | CG9350-RB | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..603 | 16..530 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21025815..21025977 | 368..530 | 815 | 100 | Plus |
2R | 25286936 | 2R | 21025661..21025756 | 274..369 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:36 has no hits.
BS13971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:17 Download gff for
BS13971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-PB | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:04 Download gff for
BS13971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..603 | 9..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:30 Download gff for
BS13971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 81..603 | 9..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:30 Download gff for
BS13971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025341..21025603 | 9..273 | 98 | -> | Plus |
2R | 21025661..21025755 | 274..368 | 100 | -> | Plus |
2R | 21025816..21025977 | 369..530 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:04 Download gff for
BS13971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16912846..16913108 | 9..273 | 98 | -> | Plus |
arm_2R | 16913166..16913260 | 274..368 | 100 | -> | Plus |
arm_2R | 16913321..16913482 | 369..530 | 100 | | Plus |
BS13971.complete Sequence
545 bp assembled on 2006-11-01
GenBank Submission: FJ637570
> BS13971.complete
GAAGTTATCAGTCGACATGTCGCTGCTCCGTTCGAAATACTACGACCATC
CCGATGGCGAGGATGCCTTTGGCAAGATCGTGGCCACCAACAAGTACGCG
GTATCCGCCGGCGTGGCCTGGTCCATGTTCGACGTCCTGACGCTCTCCAA
GCCGCAAGGATATCTGCCCACACTGGGCCGTTTCGCCTACAACACGGGTC
CGCTGATGGGCATGGCCACGGCGTTCACTCTGACCACCCTGGTGGCCACA
AATGCGCGCGGCAAGGACGATAAAATCAACTACCTGATCGGCGGTTTTGC
GGCTGGCGGCGTCTTTGGAGCCTGGAAACACAACCACGTAGCTGGTCTGT
GCGCCGGCCTCTTCCTGGGCATCGCTGGTGTCATCAAGAAGATGTCCATT
GAACAGGGCTGGGAGTTCTTCCCAAACACACCGATCAAGCAGTATGGTGG
TCTGAACATTGCCGGAAACGACTGGACCATCATGGCCGATCCTCCCAAGA
ACTGGACCACGGAAAAGCCAAAGGAGTAAAAGCTTTCTAGACCAT
BS13971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 513 | CG9350-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-RA | 712 | CG9350-RA | 89..603 | 16..530 | 2575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21025346..21025603 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21025815..21025977 | 368..530 | 815 | 100 | Plus |
2R | 25286936 | 2R | 21025661..21025756 | 274..369 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:39:38 has no hits.
BS13971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:52 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 1..513 | 17..529 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:52 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 79..601 | 9..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:06 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 90..600 | 17..527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:52 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 79..601 | 9..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:25 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9350-RA | 90..600 | 17..527 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:25 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21025816..21025974 | 369..527 | 100 | | Plus |
2R | 21025347..21025603 | 17..273 | 100 | -> | Plus |
2R | 21025661..21025755 | 274..368 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:06 Download gff for
BS13971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16912852..16913108 | 17..273 | 100 | -> | Plus |
arm_2R | 16913166..16913260 | 274..368 | 100 | -> | Plus |
arm_2R | 16913321..16913479 | 369..527 | 100 | | Plus |
BS13971.pep Sequence
Translation from 16 to 528
> BS13971.pep
MSLLRSKYYDHPDGEDAFGKIVATNKYAVSAGVAWSMFDVLTLSKPQGYL
PTLGRFAYNTGPLMGMATAFTLTTLVATNARGKDDKINYLIGGFAAGGVF
GAWKHNHVAGLCAGLFLGIAGVIKKMSIEQGWEFFPNTPIKQYGGLNIAG
NDWTIMADPPKNWTTEKPKE*
BS13971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9350-PA | 170 | CG9350-PA | 1..170 | 1..170 | 917 | 100 | Plus |