Clone Sequence Records
BS13973.3prime Sequence
602 bp (519 high quality bases) assembled on 2006-10-13
> BS13973.3prime
ATGGTCTAGAAAGCTTTCACACCTTTCGTGCATCGTCCAAGTTGTGCGCC
TTCAGCAGGGCGTCGATCGAGTCCAGATGGGCGCGCATACGCGGCAGGAA
GCTGGTCAGCACCTCGATGTTCTCCGCCTGGGCGACACCCTGGCCCAGCA
GTTGGCTGCGCGTGGGCACCCAACTGTAGATGATCTTGATTGTGCTCTGG
ACGATGAAGCCGTGGTAGGGCTTCAATGTGCGTTCGTACGCGTCCTGCAG
ATGCTGCTTAAGTGCCTCCTTGGCCTGGGCATCGTTGTAGATGTTCTCGA
AGAAGGTGCATATGAGCTGCAGGCCGCGCTTCAGCCAGAGCAGCGCGTTG
GCCGCAAAGTCGTCCACGTTCACGTTCAGCACGATCAGATCCTCCAGATA
CTGGTACTTGACCACATCCGCTCCGTAGGCTTTCGTCAGTTTGTTTATGT
TTCCGTTCATGTCGCTGATCACGGGTGTGAATAGTTTGCCGAAGCTCTCT
ATGACGGTTACTATCTCTTTGGAGGCGTCGAGAAAGGCCTGTGTCTCCAG
CTTATCAGCGGTATCGCCCAATGGCCGGAAATCCGCGCAGCGCCTTGAAC
TG
BS13973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PB | 618 | CG6299-RB | 67..618 | 568..17 | 2735 | 99.8 | Minus |
CG6299-PA | 618 | CG6299-RA | 67..618 | 568..17 | 2735 | 99.8 | Minus |
CG6299-PB | 618 | CG6299-RB | 34..65 | 602..571 | 160 | 100 | Minus |
CG6299-PA | 618 | CG6299-RA | 34..65 | 602..571 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 152..736 | 602..17 | 2875 | 99.5 | Minus |
CG6299-RD | 1003 | CG6299-RD | 317..901 | 602..17 | 2875 | 99.5 | Minus |
CG6299-RC | 987 | CG6299-RC | 306..890 | 602..17 | 2875 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 442..185 | 1290 | 100 | Minus |
X | 23542271 | X | 15466541..15466710 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 15465891..15465993 | 602..499 | 440 | 97.1 | Minus |
X | 23542271 | X | 15466067..15466124 | 500..443 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:56:09 has no hits.
BS13973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:19 Download gff for
BS13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 34..618 | 17..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:35 Download gff for
BS13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1865..2457 | 8..602 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:08 Download gff for
BS13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 306..898 | 8..602 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:08 Download gff for
BS13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15465891..15465993 | 499..602 | 97 | -> | Minus |
X | 15466069..15466124 | 443..498 | 100 | -> | Minus |
X | 15466219..15466476 | 185..442 | 100 | -> | Minus |
X | 15466543..15466718 | 8..184 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:35 Download gff for
BS13973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15359924..15360026 | 499..602 | 97 | -> | Minus |
arm_X | 15360102..15360157 | 443..498 | 100 | -> | Minus |
arm_X | 15360252..15360509 | 185..442 | 100 | -> | Minus |
arm_X | 15360576..15360751 | 8..184 | 97 | | Minus |
BS13973.5prime Sequence
595 bp (491 high quality bases) assembled on 2006-10-13
> BS13973.5prime
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTG
BS13973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PB | 618 | CG6299-RB | 1..579 | 17..595 | 2895 | 100 | Plus |
CG6299-PA | 618 | CG6299-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 119..697 | 17..595 | 2895 | 100 | Plus |
CG6299-RD | 1003 | CG6299-RD | 284..862 | 17..595 | 2895 | 100 | Plus |
CG6299-RC | 987 | CG6299-RC | 273..851 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 209..466 | 1290 | 100 | Plus |
X | 23542271 | X | 15465858..15465993 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 15466541..15466671 | 465..595 | 655 | 100 | Plus |
X | 23542271 | X | 15466067..15466124 | 151..208 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:57:39 has no hits.
BS13973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:19 Download gff for
BS13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-PA | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:24 Download gff for
BS13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1826..2410 | 9..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:53 Download gff for
BS13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 267..851 | 9..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:53 Download gff for
BS13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15465852..15465993 | 9..152 | 97 | -> | Plus |
X | 15466069..15466124 | 153..208 | 100 | -> | Plus |
X | 15466219..15466476 | 209..466 | 100 | -> | Plus |
X | 15466543..15466671 | 467..595 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:24 Download gff for
BS13973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15359885..15360026 | 9..152 | 97 | -> | Plus |
arm_X | 15360102..15360157 | 153..208 | 100 | -> | Plus |
arm_X | 15360252..15360509 | 209..466 | 100 | -> | Plus |
arm_X | 15360576..15360704 | 467..595 | 100 | | Plus |
BS13973.complete Sequence
650 bp assembled on 2006-11-01
GenBank Submission: FJ637571
> BS13973.complete
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGTGAAAGCTTTCTAGACCAT
BS13973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 618 | CG6299-PE | 1..618 | 17..634 | 3090 | 100 | Plus |
CG6299-RD | 618 | CG6299-PD | 1..618 | 17..634 | 3090 | 100 | Plus |
CG6299-RC | 618 | CG6299-PC | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-RE | 838 | CG6299-RE | 119..736 | 17..634 | 3090 | 100 | Plus |
CG6299-RD | 1003 | CG6299-RD | 284..901 | 17..634 | 3090 | 100 | Plus |
CG6299-RC | 987 | CG6299-RC | 273..890 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466219..15466476 | 209..466 | 1290 | 100 | Plus |
X | 23542271 | X | 15466541..15466710 | 465..634 | 850 | 100 | Plus |
X | 23542271 | X | 15465858..15465993 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 15466067..15466124 | 151..208 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:24:28 has no hits.
BS13973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:22 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:41 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 288..919 | 9..643 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:38 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6294-RA | 1832..2448 | 17..633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:22 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RA | 288..919 | 9..643 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:57 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6299-RC | 273..889 | 17..633 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:57 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466069..15466124 | 153..208 | 100 | -> | Plus |
X | 15466219..15466476 | 209..466 | 100 | -> | Plus |
X | 15466543..15466709 | 467..633 | 100 | | Plus |
X | 15465858..15465993 | 17..152 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:38 Download gff for
BS13973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15359891..15360026 | 17..152 | 100 | -> | Plus |
arm_X | 15360102..15360157 | 153..208 | 100 | -> | Plus |
arm_X | 15360252..15360509 | 209..466 | 100 | -> | Plus |
arm_X | 15360576..15360742 | 467..633 | 100 | | Plus |
BS13973.pep Sequence
Translation from 16 to 633
> BS13973.pep
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKV*
BS13973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6299-PE | 205 | CG6299-PE | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PD | 205 | CG6299-PD | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PC | 205 | CG6299-PC | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PA | 205 | CG6299-PA | 1..205 | 1..205 | 1035 | 100 | Plus |
CG6299-PB | 205 | CG6299-PB | 1..205 | 1..205 | 1035 | 100 | Plus |