Clone BS13973 Report

Search the DGRC for BS13973

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6299-RA
Protein status:BS13973.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13973.3prime Sequence

602 bp (519 high quality bases) assembled on 2006-10-13

> BS13973.3prime
ATGGTCTAGAAAGCTTTCACACCTTTCGTGCATCGTCCAAGTTGTGCGCC
TTCAGCAGGGCGTCGATCGAGTCCAGATGGGCGCGCATACGCGGCAGGAA
GCTGGTCAGCACCTCGATGTTCTCCGCCTGGGCGACACCCTGGCCCAGCA
GTTGGCTGCGCGTGGGCACCCAACTGTAGATGATCTTGATTGTGCTCTGG
ACGATGAAGCCGTGGTAGGGCTTCAATGTGCGTTCGTACGCGTCCTGCAG
ATGCTGCTTAAGTGCCTCCTTGGCCTGGGCATCGTTGTAGATGTTCTCGA
AGAAGGTGCATATGAGCTGCAGGCCGCGCTTCAGCCAGAGCAGCGCGTTG
GCCGCAAAGTCGTCCACGTTCACGTTCAGCACGATCAGATCCTCCAGATA
CTGGTACTTGACCACATCCGCTCCGTAGGCTTTCGTCAGTTTGTTTATGT
TTCCGTTCATGTCGCTGATCACGGGTGTGAATAGTTTGCCGAAGCTCTCT
ATGACGGTTACTATCTCTTTGGAGGCGTCGAGAAAGGCCTGTGTCTCCAG
CTTATCAGCGGTATCGCCCAATGGCCGGAAATCCGCGCAGCGCCTTGAAC
TG

BS13973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PB 618 CG6299-RB 67..618 568..17 2735 99.8 Minus
CG6299-PA 618 CG6299-RA 67..618 568..17 2735 99.8 Minus
CG6299-PB 618 CG6299-RB 34..65 602..571 160 100 Minus
CG6299-PA 618 CG6299-RA 34..65 602..571 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 152..736 602..17 2875 99.5 Minus
CG6299-RD 1003 CG6299-RD 317..901 602..17 2875 99.5 Minus
CG6299-RC 987 CG6299-RC 306..890 602..17 2875 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 442..185 1290 100 Minus
X 23542271 X 15466541..15466710 186..17 850 100 Minus
X 23542271 X 15465891..15465993 602..499 440 97.1 Minus
X 23542271 X 15466067..15466124 500..443 290 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:56:09 has no hits.

BS13973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:19 Download gff for BS13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 34..618 17..602 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:35 Download gff for BS13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1865..2457 8..602 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:08 Download gff for BS13973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 306..898 8..602 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:08 Download gff for BS13973.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15465891..15465993 499..602 97 -> Minus
X 15466069..15466124 443..498 100 -> Minus
X 15466219..15466476 185..442 100 -> Minus
X 15466543..15466718 8..184 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:35 Download gff for BS13973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15359924..15360026 499..602 97 -> Minus
arm_X 15360102..15360157 443..498 100 -> Minus
arm_X 15360252..15360509 185..442 100 -> Minus
arm_X 15360576..15360751 8..184 97   Minus

BS13973.5prime Sequence

595 bp (491 high quality bases) assembled on 2006-10-13

> BS13973.5prime
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTG

BS13973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PB 618 CG6299-RB 1..579 17..595 2895 100 Plus
CG6299-PA 618 CG6299-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 119..697 17..595 2895 100 Plus
CG6299-RD 1003 CG6299-RD 284..862 17..595 2895 100 Plus
CG6299-RC 987 CG6299-RC 273..851 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 209..466 1290 100 Plus
X 23542271 X 15465858..15465993 17..152 680 100 Plus
X 23542271 X 15466541..15466671 465..595 655 100 Plus
X 23542271 X 15466067..15466124 151..208 290 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:57:39 has no hits.

BS13973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:19 Download gff for BS13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:24 Download gff for BS13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1826..2410 9..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:53 Download gff for BS13973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 267..851 9..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:53 Download gff for BS13973.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15465852..15465993 9..152 97 -> Plus
X 15466069..15466124 153..208 100 -> Plus
X 15466219..15466476 209..466 100 -> Plus
X 15466543..15466671 467..595 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:24 Download gff for BS13973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15359885..15360026 9..152 97 -> Plus
arm_X 15360102..15360157 153..208 100 -> Plus
arm_X 15360252..15360509 209..466 100 -> Plus
arm_X 15360576..15360704 467..595 100   Plus

BS13973.complete Sequence

650 bp assembled on 2006-11-01

GenBank Submission: FJ637571

> BS13973.complete
GAAGTTATCAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTC
AGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAG
CTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCAT
AGAGAGCTTCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAA
ACATAAACAAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAG
TATCTGGAGGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGC
CAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCT
TCGAGAACATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCAT
CTGCAGGACGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGT
CCAGAGCACAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAAC
TGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGC
TTCCTGCCGCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAA
GGCGCACAACTTGGACGATGCACGAAAGGTGTGAAAGCTTTCTAGACCAT

BS13973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 618 CG6299-PE 1..618 17..634 3090 100 Plus
CG6299-RD 618 CG6299-PD 1..618 17..634 3090 100 Plus
CG6299-RC 618 CG6299-PC 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-RE 838 CG6299-RE 119..736 17..634 3090 100 Plus
CG6299-RD 1003 CG6299-RD 284..901 17..634 3090 100 Plus
CG6299-RC 987 CG6299-RC 273..890 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466219..15466476 209..466 1290 100 Plus
X 23542271 X 15466541..15466710 465..634 850 100 Plus
X 23542271 X 15465858..15465993 17..152 680 100 Plus
X 23542271 X 15466067..15466124 151..208 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:24:28 has no hits.

BS13973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:22 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:41 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 288..919 9..643 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:38 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6294-RA 1832..2448 17..633 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:22 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RA 288..919 9..643 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:57 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
CG6299-RC 273..889 17..633 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:57 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
X 15466069..15466124 153..208 100 -> Plus
X 15466219..15466476 209..466 100 -> Plus
X 15466543..15466709 467..633 100   Plus
X 15465858..15465993 17..152 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:38 Download gff for BS13973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15359891..15360026 17..152 100 -> Plus
arm_X 15360102..15360157 153..208 100 -> Plus
arm_X 15360252..15360509 209..466 100 -> Plus
arm_X 15360576..15360742 467..633 100   Plus

BS13973.pep Sequence

Translation from 16 to 633

> BS13973.pep
MAASEGSAARIQFKALRGFPAIGDTADKLETQAFLDASKEIVTVIESFGK
LFTPVISDMNGNINKLTKAYGADVVKYQYLEDLIVLNVNVDDFAANALLW
LKRGLQLICTFFENIYNDAQAKEALKQHLQDAYERTLKPYHGFIVQSTIK
IIYSWVPTRSQLLGQGVAQAENIEVLTSFLPRMRAHLDSIDALLKAHNLD
DARKV*

BS13973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6299-PE 205 CG6299-PE 1..205 1..205 1035 100 Plus
CG6299-PD 205 CG6299-PD 1..205 1..205 1035 100 Plus
CG6299-PC 205 CG6299-PC 1..205 1..205 1035 100 Plus
CG6299-PA 205 CG6299-PA 1..205 1..205 1035 100 Plus
CG6299-PB 205 CG6299-PB 1..205 1..205 1035 100 Plus