Clone BS13975 Report

Search the DGRC for BS13975

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptScp2-RA
Protein status:BS13975.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13975.3prime Sequence

564 bp (502 high quality bases) assembled on 2006-10-13

> BS13975.3prime
ATGGTCTAGAAAGCTTTTAGAAACTGGTCTTTCCAAAAATGTAGTTGCCA
GGCGCATTCACATCCTCGGCGGCGAAGTACTCCTTCCACAAGGCGGCGAA
CTGCTCCCGGGTGACCTCGCTCTGCCCCTGAGACATCTTCGCAAAGGCTT
CCTCACACTCGGTCTTCTCCAGGCCATAGCTGGAGCAGACCAGCGTGAAT
TCGGTCACATCGATGCCTCCATCGTGCGAGGCATCCTCCAGGTCGAACAT
GAAGTTCATGTAGGCATTCTGCCAGTCCATCACGCTGCTGGGATCCTTGG
CATAGGCGTCCCACATGTTGCACCACTCGTCCACGCTGACCTGTCCATCG
TTGTCCTTGTCGGCCTTGGAGCGCAGGCCAGTCCAGATTTCCATCATCAG
GTCGTAGGTCTCCTTGTTCTTCGGCGTGTCCTTCTGCCAGCCGCGCAGTT
GGCAAACGCGCTCGATGGCCAGCTCGAAGTCCTTAACGTCGATTTCGCCG
CTTTTGGTCACATCAAAAAACACATTGAACAGAAAAAGCAGCTTTCTTTT
TGCGGAAATCGGAG

BS13975.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14904-PA 555 Scp2-RA 28..555 544..17 2565 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 1283 CG14904-RA 209..755 564..17 2670 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16575071..16575397 17..343 1635 100 Plus
3R 32079331 3R 16576921..16577044 339..462 620 100 Plus
3R 32079331 3R 16577321..16577374 461..514 240 96.3 Plus
3R 32079331 3R 16578990..16579039 514..564 190 96.1 Plus
Blast to na_te.dros performed on 2015-02-11 17:39:12 has no hits.

BS13975.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:20 Download gff for BS13975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14904-PA 9..555 17..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:54 Download gff for BS13975.3prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 209..755 17..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:57 Download gff for BS13975.3prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 209..755 17..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:57 Download gff for BS13975.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16575071..16575394 17..340 100 <- Plus
3R 16576923..16577042 341..460 100 <- Plus
3R 16577321..16577373 461..513 96 <- Plus
3R 16578990..16579039 514..564 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:54 Download gff for BS13975.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12400793..12401116 17..340 100 <- Plus
arm_3R 12402645..12402764 341..460 100 <- Plus
arm_3R 12403043..12403095 461..513 96 <- Plus
arm_3R 12404712..12404761 514..564 96   Plus

BS13975.5prime Sequence

563 bp (490 high quality bases) assembled on 2006-10-13

> BS13975.5prime
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTTGGAAAGACC

BS13975.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14904-PA 555 Scp2-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 1283 CG14904-RA 201..746 17..563 2710 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16575089..16575397 553..245 1545 100 Minus
3R 32079331 3R 16576921..16577044 249..126 620 100 Minus
3R 32079331 3R 16578990..16579047 74..17 290 100 Minus
3R 32079331 3R 16577321..16577374 127..74 270 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:56:48 has no hits.

BS13975.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:20 Download gff for BS13975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14904-PA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:38 Download gff for BS13975.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 196..746 9..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:18 Download gff for BS13975.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 196..746 9..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:18 Download gff for BS13975.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16578990..16579052 9..74 93   Minus
3R 16575080..16575394 248..563 99 <- Minus
3R 16576923..16577042 128..247 100 <- Minus
3R 16577321..16577373 75..127 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:38 Download gff for BS13975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12400802..12401116 248..563 99 <- Minus
arm_3R 12402645..12402764 128..247 100 <- Minus
arm_3R 12403043..12403095 75..127 100 <- Minus
arm_3R 12404712..12404774 9..74 93   Minus

BS13975.complete Sequence

587 bp assembled on 2006-11-01

GenBank Submission: FJ637572

> BS13975.complete
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTGGAAAGACCAGTTTCTAAAAGCTTTCTAGACCAT

BS13975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 555 CG14904-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-RA 1283 CG14904-RA 201..755 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16575071..16575397 571..245 1635 100 Minus
3R 32079331 3R 16576921..16577044 249..126 620 100 Minus
3R 32079331 3R 16578990..16579047 74..17 290 100 Minus
3R 32079331 3R 16577321..16577374 127..74 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:38:53 has no hits.

BS13975.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:18 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:22 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 193..752 9..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:41 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 201..753 17..569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:18 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 193..752 9..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:33 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
Scp2-RA 201..753 17..569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:33 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16575073..16575394 248..569 100 <- Minus
3R 16576923..16577042 128..247 100 <- Minus
3R 16577321..16577373 75..127 100 <- Minus
3R 16578990..16579047 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:41 Download gff for BS13975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12400795..12401116 248..569 100 <- Minus
arm_3R 12402645..12402764 128..247 100 <- Minus
arm_3R 12403043..12403095 75..127 100 <- Minus
arm_3R 12404712..12404769 17..74 100   Minus

BS13975.pep Sequence

Translation from 16 to 570

> BS13975.pep
MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP
KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW
QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ
SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSF*

BS13975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Scp2-PA 184 CG14904-PA 1..184 1..184 990 100 Plus