Clone Sequence Records
BS13975.3prime Sequence
564 bp (502 high quality bases) assembled on 2006-10-13
> BS13975.3prime
ATGGTCTAGAAAGCTTTTAGAAACTGGTCTTTCCAAAAATGTAGTTGCCA
GGCGCATTCACATCCTCGGCGGCGAAGTACTCCTTCCACAAGGCGGCGAA
CTGCTCCCGGGTGACCTCGCTCTGCCCCTGAGACATCTTCGCAAAGGCTT
CCTCACACTCGGTCTTCTCCAGGCCATAGCTGGAGCAGACCAGCGTGAAT
TCGGTCACATCGATGCCTCCATCGTGCGAGGCATCCTCCAGGTCGAACAT
GAAGTTCATGTAGGCATTCTGCCAGTCCATCACGCTGCTGGGATCCTTGG
CATAGGCGTCCCACATGTTGCACCACTCGTCCACGCTGACCTGTCCATCG
TTGTCCTTGTCGGCCTTGGAGCGCAGGCCAGTCCAGATTTCCATCATCAG
GTCGTAGGTCTCCTTGTTCTTCGGCGTGTCCTTCTGCCAGCCGCGCAGTT
GGCAAACGCGCTCGATGGCCAGCTCGAAGTCCTTAACGTCGATTTCGCCG
CTTTTGGTCACATCAAAAAACACATTGAACAGAAAAAGCAGCTTTCTTTT
TGCGGAAATCGGAG
BS13975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14904-PA | 555 | Scp2-RA | 28..555 | 544..17 | 2565 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 1283 | CG14904-RA | 209..755 | 564..17 | 2670 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16575071..16575397 | 17..343 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 16576921..16577044 | 339..462 | 620 | 100 | Plus |
3R | 32079331 | 3R | 16577321..16577374 | 461..514 | 240 | 96.3 | Plus |
3R | 32079331 | 3R | 16578990..16579039 | 514..564 | 190 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:39:12 has no hits.
BS13975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:20 Download gff for
BS13975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14904-PA | 9..555 | 17..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:54 Download gff for
BS13975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 209..755 | 17..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:57 Download gff for
BS13975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 209..755 | 17..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:57 Download gff for
BS13975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16575071..16575394 | 17..340 | 100 | <- | Plus |
3R | 16576923..16577042 | 341..460 | 100 | <- | Plus |
3R | 16577321..16577373 | 461..513 | 96 | <- | Plus |
3R | 16578990..16579039 | 514..564 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:54 Download gff for
BS13975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12400793..12401116 | 17..340 | 100 | <- | Plus |
arm_3R | 12402645..12402764 | 341..460 | 100 | <- | Plus |
arm_3R | 12403043..12403095 | 461..513 | 96 | <- | Plus |
arm_3R | 12404712..12404761 | 514..564 | 96 | | Plus |
BS13975.5prime Sequence
563 bp (490 high quality bases) assembled on 2006-10-13
> BS13975.5prime
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTTGGAAAGACC
BS13975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14904-PA | 555 | Scp2-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 1283 | CG14904-RA | 201..746 | 17..563 | 2710 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16575089..16575397 | 553..245 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 16576921..16577044 | 249..126 | 620 | 100 | Minus |
3R | 32079331 | 3R | 16578990..16579047 | 74..17 | 290 | 100 | Minus |
3R | 32079331 | 3R | 16577321..16577374 | 127..74 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:56:48 has no hits.
BS13975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:20 Download gff for
BS13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14904-PA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:38 Download gff for
BS13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 196..746 | 9..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:18 Download gff for
BS13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 196..746 | 9..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:18 Download gff for
BS13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16578990..16579052 | 9..74 | 93 | | Minus |
3R | 16575080..16575394 | 248..563 | 99 | <- | Minus |
3R | 16576923..16577042 | 128..247 | 100 | <- | Minus |
3R | 16577321..16577373 | 75..127 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:38 Download gff for
BS13975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12400802..12401116 | 248..563 | 99 | <- | Minus |
arm_3R | 12402645..12402764 | 128..247 | 100 | <- | Minus |
arm_3R | 12403043..12403095 | 75..127 | 100 | <- | Minus |
arm_3R | 12404712..12404774 | 9..74 | 93 | | Minus |
BS13975.complete Sequence
587 bp assembled on 2006-11-01
GenBank Submission: FJ637572
> BS13975.complete
GAAGTTATCAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGC
TTTTTCTGTTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGAC
GTTAAGGACTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTG
GCAGAAGGACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAA
TCTGGACTGGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTC
AGCGTGGACGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAG
CAGCGTGATGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGG
AGGATGCCTCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTC
TGCTCCAGCTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAA
GATGTCTCAGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGT
GGAAGGAGTACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATT
TTTGGAAAGACCAGTTTCTAAAAGCTTTCTAGACCAT
BS13975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 555 | CG14904-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-RA | 1283 | CG14904-RA | 201..755 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16575071..16575397 | 571..245 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 16576921..16577044 | 249..126 | 620 | 100 | Minus |
3R | 32079331 | 3R | 16578990..16579047 | 74..17 | 290 | 100 | Minus |
3R | 32079331 | 3R | 16577321..16577374 | 127..74 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:38:53 has no hits.
BS13975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:18 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:22 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 193..752 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:41 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 201..753 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:18 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 193..752 | 9..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:33 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp2-RA | 201..753 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:33 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16575073..16575394 | 248..569 | 100 | <- | Minus |
3R | 16576923..16577042 | 128..247 | 100 | <- | Minus |
3R | 16577321..16577373 | 75..127 | 100 | <- | Minus |
3R | 16578990..16579047 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:41 Download gff for
BS13975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12400795..12401116 | 248..569 | 100 | <- | Minus |
arm_3R | 12402645..12402764 | 128..247 | 100 | <- | Minus |
arm_3R | 12403043..12403095 | 75..127 | 100 | <- | Minus |
arm_3R | 12404712..12404769 | 17..74 | 100 | | Minus |
BS13975.pep Sequence
Translation from 16 to 570
> BS13975.pep
MSISDFRKKKLLFLFNVFFDVNQSGEIDVKDFELAIERVCQLRGWQKDTP
KNKETYDLMMEIWTGLRSKADKDNDGQVSVDEWCNMWDAYAKDPSSVMDW
QNAYMNFMFDLEDASHDGGIDVTEFTLVCSSYGLEKTECEEAFAKMSQGQ
SEVTREQFAALWKEYFAAEDVNAPGNYIFGKTSF*
BS13975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp2-PA | 184 | CG14904-PA | 1..184 | 1..184 | 990 | 100 | Plus |