Clone BS13980 Report

Search the DGRC for BS13980

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptRPA3-RA
Protein status:BS13980.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13980.3prime Sequence

369 bp (369 high quality bases) assembled on 2006-10-13

> BS13980.3prime
ATGGTCTAGAAAGCTTCTAGCCGCTGCGATAGAAGGCCTTGACATTGTTA
ATCAGGTGGCTCAATCCATTATAGCCATCCTTATCGAAGTCGATGTTCTC
GCCGCCAAACTCGATGACCTCCTTGGCCCTGAGGGTGTCCGCACCATGGG
GCACTCCAATGACCTCGACCCAGGCCCCTTCGGCGGCGCCCAGCTCACCC
GGCAGATTGATCTTTAGCTTGTGGTTGTCTGTGGAACTGGCCAGCAAAGT
GGATCCCGCGACGCTCTCCACGCGAACCATTATGCTCACGGTTTGGCCGG
AAAACTGCTTCAGCATGCCGCCGTTGATAATCGAGCGTGGATCAAAGGCA
TCCATGTCGACTGATAACT

BS13980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15220-PA 339 CG15220-RA 1..339 355..17 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..425 355..17 1695 100 Minus
RPA3-RA 541 CG15220-RA 87..425 355..17 1695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 117..355 1195 100 Plus
X 23542271 X 11615345..11615448 17..120 520 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:26:59 has no hits.

BS13980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:24 Download gff for BS13980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 17..355 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:32 Download gff for BS13980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..431 9..362 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:34 Download gff for BS13980.3prime
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 80..431 9..362 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:34 Download gff for BS13980.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11615339..11615446 9..118 96 <- Plus
X 11615518..11615761 119..362 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:32 Download gff for BS13980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509372..11509479 9..118 96 <- Plus
arm_X 11509551..11509794 119..362 98   Plus

BS13980.5prime Sequence

369 bp (369 high quality bases) assembled on 2006-10-13

> BS13980.5prime
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCTAGAAGCTTTCTAGACC

BS13980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15220-PA 339 CG15220-RA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..425 17..355 1695 100 Plus
RPA3-RA 541 CG15220-RA 87..425 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 255..17 1195 100 Minus
X 23542271 X 11615345..11615448 355..252 520 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:15:55 has no hits.

BS13980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:24 Download gff for BS13980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-PA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:56 Download gff for BS13980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..431 10..363 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:03 Download gff for BS13980.5prime
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 80..431 10..363 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:03 Download gff for BS13980.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11615339..11615446 254..363 96 <- Minus
X 11615518..11615761 10..253 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:56 Download gff for BS13980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509372..11509479 254..363 96 <- Minus
arm_X 11509551..11509794 10..253 98   Minus

BS13980.complete Sequence

371 bp assembled on 2006-11-01

GenBank Submission: FJ637573

> BS13980.complete
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCTAGAAGCTTTCTAGACCAT

BS13980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 339 CG15220-PB 1..339 17..355 1695 100 Plus
RPA3-RA 339 CG15220-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-RB 673 CG15220-RB 87..425 17..355 1695 100 Plus
RPA3-RA 541 CG15220-RA 87..425 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11615516..11615754 255..17 1195 100 Minus
X 23542271 X 11615345..11615448 355..252 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:35:43 has no hits.

BS13980.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:53 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 1..339 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:45 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..431 10..363 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:42 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 87..425 17..355 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:53 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
CG15220-RA 80..431 10..363 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:34 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
RPA3-RA 87..425 17..355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:34 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
X 11615518..11615754 17..253 100   Minus
X 11615345..11615446 254..355 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:42 Download gff for BS13980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11509378..11509479 254..355 100 <- Minus
arm_X 11509551..11509787 17..253 100   Minus

BS13980.pep Sequence

Translation from 16 to 354

> BS13980.pep
MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN
LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH
LINNVKAFYRSG*

BS13980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
RPA3-PB 112 CG15220-PB 1..112 1..112 574 100 Plus
RPA3-PA 112 CG15220-PA 1..112 1..112 574 100 Plus