Clone Sequence Records
BS13980.3prime Sequence
369 bp (369 high quality bases) assembled on 2006-10-13
> BS13980.3prime
ATGGTCTAGAAAGCTTCTAGCCGCTGCGATAGAAGGCCTTGACATTGTTA
ATCAGGTGGCTCAATCCATTATAGCCATCCTTATCGAAGTCGATGTTCTC
GCCGCCAAACTCGATGACCTCCTTGGCCCTGAGGGTGTCCGCACCATGGG
GCACTCCAATGACCTCGACCCAGGCCCCTTCGGCGGCGCCCAGCTCACCC
GGCAGATTGATCTTTAGCTTGTGGTTGTCTGTGGAACTGGCCAGCAAAGT
GGATCCCGCGACGCTCTCCACGCGAACCATTATGCTCACGGTTTGGCCGG
AAAACTGCTTCAGCATGCCGCCGTTGATAATCGAGCGTGGATCAAAGGCA
TCCATGTCGACTGATAACT
BS13980.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15220-PA | 339 | CG15220-RA | 1..339 | 355..17 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..425 | 355..17 | 1695 | 100 | Minus |
RPA3-RA | 541 | CG15220-RA | 87..425 | 355..17 | 1695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 117..355 | 1195 | 100 | Plus |
X | 23542271 | X | 11615345..11615448 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:26:59 has no hits.
BS13980.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:24 Download gff for
BS13980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 17..355 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:32 Download gff for
BS13980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..431 | 9..362 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:34 Download gff for
BS13980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 80..431 | 9..362 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:34 Download gff for
BS13980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615339..11615446 | 9..118 | 96 | <- | Plus |
X | 11615518..11615761 | 119..362 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:32 Download gff for
BS13980.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509372..11509479 | 9..118 | 96 | <- | Plus |
arm_X | 11509551..11509794 | 119..362 | 98 | | Plus |
BS13980.5prime Sequence
369 bp (369 high quality bases) assembled on 2006-10-13
> BS13980.5prime
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCTAGAAGCTTTCTAGACC
BS13980.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15220-PA | 339 | CG15220-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..425 | 17..355 | 1695 | 100 | Plus |
RPA3-RA | 541 | CG15220-RA | 87..425 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 255..17 | 1195 | 100 | Minus |
X | 23542271 | X | 11615345..11615448 | 355..252 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:55 has no hits.
BS13980.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:24 Download gff for
BS13980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-PA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:56 Download gff for
BS13980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..431 | 10..363 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:03 Download gff for
BS13980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 80..431 | 10..363 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:03 Download gff for
BS13980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615339..11615446 | 254..363 | 96 | <- | Minus |
X | 11615518..11615761 | 10..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:56 Download gff for
BS13980.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509372..11509479 | 254..363 | 96 | <- | Minus |
arm_X | 11509551..11509794 | 10..253 | 98 | | Minus |
BS13980.complete Sequence
371 bp assembled on 2006-11-01
GenBank Submission: FJ637573
> BS13980.complete
GAAGTTATCAGTCGACATGGATGCCTTTGATCCACGCTCGATTATCAACG
GCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTGAGCATAATGGTTCGC
GTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAGTTCCACAGACAACCA
CAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCGCCGCCGAAGGGGCCT
GGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGACACCCTCAGGGCCAAG
GAGGTCATCGAGTTTGGCGGCGAGAACATCGACTTCGATAAGGATGGCTA
TAATGGATTGAGCCACCTGATTAACAATGTCAAGGCCTTCTATCGCAGCG
GCTAGAAGCTTTCTAGACCAT
BS13980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 339 | CG15220-PB | 1..339 | 17..355 | 1695 | 100 | Plus |
RPA3-RA | 339 | CG15220-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-RB | 673 | CG15220-RB | 87..425 | 17..355 | 1695 | 100 | Plus |
RPA3-RA | 541 | CG15220-RA | 87..425 | 17..355 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11615516..11615754 | 255..17 | 1195 | 100 | Minus |
X | 23542271 | X | 11615345..11615448 | 355..252 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:35:43 has no hits.
BS13980.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:53 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 1..339 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:45 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..431 | 10..363 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:42 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 87..425 | 17..355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:53 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15220-RA | 80..431 | 10..363 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:34 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RPA3-RA | 87..425 | 17..355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:34 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11615518..11615754 | 17..253 | 100 | | Minus |
X | 11615345..11615446 | 254..355 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:42 Download gff for
BS13980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11509378..11509479 | 254..355 | 100 | <- | Minus |
arm_X | 11509551..11509787 | 17..253 | 100 | | Minus |
BS13980.pep Sequence
Translation from 16 to 354
> BS13980.pep
MDAFDPRSIINGGMLKQFSGQTVSIMVRVESVAGSTLLASSTDNHKLKIN
LPGELGAAEGAWVEVIGVPHGADTLRAKEVIEFGGENIDFDKDGYNGLSH
LINNVKAFYRSG*
BS13980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RPA3-PB | 112 | CG15220-PB | 1..112 | 1..112 | 574 | 100 | Plus |
RPA3-PA | 112 | CG15220-PA | 1..112 | 1..112 | 574 | 100 | Plus |