Clone Sequence Records
BS13984.complete Sequence
761 bp assembled on 2010-02-09
GenBank Submission: KX805972
> BS13984.complete
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAATCCCACC
GTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGATCCCGCCAAGAG
TGGACCGCTGCTGGCCCACATACCGCTGAATCGGTTCTGCGAGGTGCAGG
AGGTGGTGGACGCCACCGGCTATCTGCTGAGCAGCAAGTCGAGCTTCGTG
AACGGCCACCACATCCTGCTCGAAGGTGGATATTCCGTTTCCTAAAAGCT
TTCTAGACCAT
BS13984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 729 | CG7322-PC | 1..729 | 17..745 | 3645 | 100 | Plus |
CG7322-RB | 729 | CG7322-PB | 1..729 | 17..745 | 3645 | 100 | Plus |
CG7322-RA | 729 | CG7322-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 382..1110 | 17..745 | 3645 | 100 | Plus |
CG7322-RB | 877 | CG7322-RB | 76..804 | 17..745 | 3645 | 100 | Plus |
CG7322-RA | 934 | CG7322-RA | 66..794 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18856013..18856437 | 745..321 | 2110 | 99.8 | Minus |
X | 23542271 | X | 18857069..18857376 | 324..17 | 1540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:46:18 has no hits.
BS13984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:59 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:14 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 76..802 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:07 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 66..792 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:24 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 76..802 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:23 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 66..792 | 17..743 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:23 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18857069..18857376 | 17..324 | 100 | | Minus |
X | 18856015..18856433 | 325..743 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:07 Download gff for
BS13984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18751102..18751409 | 17..324 | 100 | | Minus |
arm_X | 18750048..18750466 | 325..743 | 100 | <- | Minus |
BS13984.3prime Sequence
683 bp (595 high quality bases) assembled on 2006-10-13
> BS13984.3prime
ATGGTCTAGAAAGCTTTTAGGAAACGGAATATCCACCTTCGAGCAGGATG
TGGTGGCCGTTCACGAAGCTCGACTTGCTGCTCAGCAGATAGCCGGTGGC
GTCCACCACCTCCTGCACCTCGCAGAACCGATTCAGCGGTATGTGGGCCA
GCAGCGGTCCACTCTTGGCGGGATCCGACCAATTGTCGGCGCCCATTTTG
GTCAGCACCACGGTGGGATTAACGGAATTGACGCGAATTTTGCGCGGACC
CAGCTCCAAGGCCAGCGACTTGGTCAGCGAATCGAGGGCCGCCTTGGTGG
CACTGTAGGCCGTGTGGCCGCCAAAGGATCGGGATGACGCTATCGAGGAC
ACGTTGACAATTGAGGCTCCGTCTTTCAAGCGGGGCAGCAGAGATTGGGT
GACATTGAACACCGCCTTGATGTTCACATCGAAGTGGGTGTCGAAATCCT
GTTCGGTGAGCTCCTCGAATGGCTTGATGATGGCCACGCCGGCGTTGTTG
ACCAGACCGTCCAGCAGAGGCACCTTCGCCAGCCCCTCACGCACCGCCTG
CCAGCCGCTGAGATCCAATTGCAGCGGCTGGATGTGCACCGGATCGAAGG
CCACCAGCTGCTGGAGCTGCTCTGGCTTCCTGGCCACTGCGATGACGGTG
GCACCCGCGGAGGCCAACTGCTTGACCAACGCC
BS13984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PA | 729 | CG7322-RA | 63..729 | 683..17 | 3335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 444..1110 | 683..17 | 3335 | 100 | Minus |
CG7322-RB | 877 | CG7322-RB | 138..804 | 683..17 | 3335 | 100 | Minus |
CG7322-RA | 934 | CG7322-RA | 128..794 | 683..17 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18856013..18856437 | 17..441 | 2110 | 99.8 | Plus |
X | 23542271 | X | 18857069..18857314 | 438..683 | 1230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:17:58 has no hits.
BS13984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:27 Download gff for
BS13984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 63..729 | 17..683 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:50 Download gff for
BS13984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 128..794 | 17..683 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:06 Download gff for
BS13984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 128..794 | 17..683 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:06 Download gff for
BS13984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18856013..18856433 | 17..437 | 100 | <- | Plus |
X | 18857069..18857314 | 438..683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:50 Download gff for
BS13984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18750046..18750466 | 17..437 | 100 | <- | Plus |
arm_X | 18751102..18751347 | 438..683 | 100 | | Plus |
BS13984.5prime Sequence
589 bp (542 high quality bases) assembled on 2006-10-13
> BS13984.5prime
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAAATCCCAC
CGTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGA
BS13984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PA | 729 | CG7322-RA | 1..572 | 17..589 | 2825 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-RC | 1183 | CG7322-RC | 382..953 | 17..589 | 2840 | 99.8 | Plus |
CG7322-RB | 877 | CG7322-RB | 76..647 | 17..589 | 2840 | 99.8 | Plus |
CG7322-RA | 934 | CG7322-RA | 66..637 | 17..589 | 2840 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18857069..18857376 | 324..17 | 1540 | 100 | Minus |
X | 23542271 | X | 18856170..18856437 | 589..321 | 1280 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:03:29 has no hits.
BS13984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:27 Download gff for
BS13984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-PA | 1..571 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:36 Download gff for
BS13984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..636 | 12..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:59 Download gff for
BS13984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7322-RA | 61..636 | 12..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:59 Download gff for
BS13984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18856171..18856433 | 325..588 | 99 | <- | Minus |
X | 18857069..18857381 | 12..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:36 Download gff for
BS13984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18750204..18750466 | 325..588 | 99 | <- | Minus |
arm_X | 18751102..18751414 | 12..324 | 99 | | Minus |
BS13984.pep Sequence
Translation from 16 to 744
> BS13984.pep
MWTDLAGKVILVTGAGAGIGQALVKQLASAGATVIAVARKPEQLQQLVAF
DPVHIQPLQLDLSGWQAVREGLAKVPLLDGLVNNAGVAIIKPFEELTEQD
FDTHFDVNIKAVFNVTQSLLPRLKDGASIVNVSSIASSRSFGGHTAYSAT
KAALDSLTKSLALELGPRKIRVNSVNPTVVLTKMGADNWSDPAKSGPLLA
HIPLNRFCEVQEVVDATGYLLSSKSSFVNGHHILLEGGYSVS*
BS13984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7322-PC | 242 | CG7322-PC | 1..242 | 1..242 | 1214 | 100 | Plus |
CG7322-PB | 242 | CG7322-PB | 1..242 | 1..242 | 1214 | 100 | Plus |
CG7322-PA | 242 | CG7322-PA | 1..242 | 1..242 | 1214 | 100 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 5..238 | 339 | 37.2 | Plus |
CG31549-PB | 257 | CG31549-PB | 7..250 | 8..238 | 326 | 35.7 | Plus |