Clone BS13984 Report

Search the DGRC for BS13984

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG7322-RA
Protein status:BS13984.pep: full length peptide match
Sequenced Size:761

Clone Sequence Records

BS13984.complete Sequence

761 bp assembled on 2010-02-09

GenBank Submission: KX805972

> BS13984.complete
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAATCCCACC
GTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGATCCCGCCAAGAG
TGGACCGCTGCTGGCCCACATACCGCTGAATCGGTTCTGCGAGGTGCAGG
AGGTGGTGGACGCCACCGGCTATCTGCTGAGCAGCAAGTCGAGCTTCGTG
AACGGCCACCACATCCTGCTCGAAGGTGGATATTCCGTTTCCTAAAAGCT
TTCTAGACCAT

BS13984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 729 CG7322-PC 1..729 17..745 3645 100 Plus
CG7322-RB 729 CG7322-PB 1..729 17..745 3645 100 Plus
CG7322-RA 729 CG7322-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 382..1110 17..745 3645 100 Plus
CG7322-RB 877 CG7322-RB 76..804 17..745 3645 100 Plus
CG7322-RA 934 CG7322-RA 66..794 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18856013..18856437 745..321 2110 99.8 Minus
X 23542271 X 18857069..18857376 324..17 1540 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:46:18 has no hits.

BS13984.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:59 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:14 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 76..802 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:07 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 66..792 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:24 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 76..802 17..743 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:23 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 66..792 17..743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:23 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
X 18857069..18857376 17..324 100   Minus
X 18856015..18856433 325..743 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:07 Download gff for BS13984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18751102..18751409 17..324 100   Minus
arm_X 18750048..18750466 325..743 100 <- Minus

BS13984.3prime Sequence

683 bp (595 high quality bases) assembled on 2006-10-13

> BS13984.3prime
ATGGTCTAGAAAGCTTTTAGGAAACGGAATATCCACCTTCGAGCAGGATG
TGGTGGCCGTTCACGAAGCTCGACTTGCTGCTCAGCAGATAGCCGGTGGC
GTCCACCACCTCCTGCACCTCGCAGAACCGATTCAGCGGTATGTGGGCCA
GCAGCGGTCCACTCTTGGCGGGATCCGACCAATTGTCGGCGCCCATTTTG
GTCAGCACCACGGTGGGATTAACGGAATTGACGCGAATTTTGCGCGGACC
CAGCTCCAAGGCCAGCGACTTGGTCAGCGAATCGAGGGCCGCCTTGGTGG
CACTGTAGGCCGTGTGGCCGCCAAAGGATCGGGATGACGCTATCGAGGAC
ACGTTGACAATTGAGGCTCCGTCTTTCAAGCGGGGCAGCAGAGATTGGGT
GACATTGAACACCGCCTTGATGTTCACATCGAAGTGGGTGTCGAAATCCT
GTTCGGTGAGCTCCTCGAATGGCTTGATGATGGCCACGCCGGCGTTGTTG
ACCAGACCGTCCAGCAGAGGCACCTTCGCCAGCCCCTCACGCACCGCCTG
CCAGCCGCTGAGATCCAATTGCAGCGGCTGGATGTGCACCGGATCGAAGG
CCACCAGCTGCTGGAGCTGCTCTGGCTTCCTGGCCACTGCGATGACGGTG
GCACCCGCGGAGGCCAACTGCTTGACCAACGCC

BS13984.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PA 729 CG7322-RA 63..729 683..17 3335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 444..1110 683..17 3335 100 Minus
CG7322-RB 877 CG7322-RB 138..804 683..17 3335 100 Minus
CG7322-RA 934 CG7322-RA 128..794 683..17 3335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18856013..18856437 17..441 2110 99.8 Plus
X 23542271 X 18857069..18857314 438..683 1230 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:17:58 has no hits.

BS13984.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:27 Download gff for BS13984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 63..729 17..683 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:50 Download gff for BS13984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 128..794 17..683 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:06 Download gff for BS13984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 128..794 17..683 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:06 Download gff for BS13984.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18856013..18856433 17..437 100 <- Plus
X 18857069..18857314 438..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:50 Download gff for BS13984.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18750046..18750466 17..437 100 <- Plus
arm_X 18751102..18751347 438..683 100   Plus

BS13984.5prime Sequence

589 bp (542 high quality bases) assembled on 2006-10-13

> BS13984.5prime
GAAGTTATCAGTCGACATGTGGACAGATCTCGCGGGCAAGGTGATCTTGG
TGACCGGAGCCGGGGCCGGTATTGGCCAGGCGTTGGTCAAGCAGTTGGCC
TCCGCGGGTGCCACCGTCATCGCAGTGGCCAGGAAGCCAGAGCAGCTCCA
GCAGCTGGTGGCCTTCGATCCGGTGCACATCCAGCCGCTGCAATTGGATC
TCAGCGGCTGGCAGGCGGTGCGTGAGGGGCTGGCGAAGGTGCCTCTGCTG
GACGGTCTGGTCAACAACGCCGGCGTGGCCATCATCAAGCCATTCGAGGA
GCTCACCGAACAGGATTTCGACACCCACTTCGATGTGAACATCAAGGCGG
TGTTCAATGTCACCCAATCTCTGCTGCCCCGCTTGAAAGACGGAGCCTCA
ATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGGCGGCCACAC
GGCCTACAGTGCCACCAAGGCGGCCCTCGATTCGCTGACCAAGTCGCTGG
CCTTGGAGCTGGGTCCGCGCAAAATTCGCGTCAATTCCGTTAAATCCCAC
CGTGGTGCTGACCAAAATGGGCGCCGACAATTGGTCGGA

BS13984.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PA 729 CG7322-RA 1..572 17..589 2825 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-RC 1183 CG7322-RC 382..953 17..589 2840 99.8 Plus
CG7322-RB 877 CG7322-RB 76..647 17..589 2840 99.8 Plus
CG7322-RA 934 CG7322-RA 66..637 17..589 2840 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18857069..18857376 324..17 1540 100 Minus
X 23542271 X 18856170..18856437 589..321 1280 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 07:03:29 has no hits.

BS13984.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:27 Download gff for BS13984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-PA 1..571 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:41:36 Download gff for BS13984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..636 12..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:59 Download gff for BS13984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7322-RA 61..636 12..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:59 Download gff for BS13984.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18856171..18856433 325..588 99 <- Minus
X 18857069..18857381 12..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:41:36 Download gff for BS13984.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18750204..18750466 325..588 99 <- Minus
arm_X 18751102..18751414 12..324 99   Minus

BS13984.pep Sequence

Translation from 16 to 744

> BS13984.pep
MWTDLAGKVILVTGAGAGIGQALVKQLASAGATVIAVARKPEQLQQLVAF
DPVHIQPLQLDLSGWQAVREGLAKVPLLDGLVNNAGVAIIKPFEELTEQD
FDTHFDVNIKAVFNVTQSLLPRLKDGASIVNVSSIASSRSFGGHTAYSAT
KAALDSLTKSLALELGPRKIRVNSVNPTVVLTKMGADNWSDPAKSGPLLA
HIPLNRFCEVQEVVDATGYLLSSKSSFVNGHHILLEGGYSVS*

BS13984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7322-PC 242 CG7322-PC 1..242 1..242 1214 100 Plus
CG7322-PB 242 CG7322-PB 1..242 1..242 1214 100 Plus
CG7322-PA 242 CG7322-PA 1..242 1..242 1214 100 Plus
CG3699-PA 251 CG3699-PA 3..244 5..238 339 37.2 Plus
CG31549-PB 257 CG31549-PB 7..250 8..238 326 35.7 Plus