Clone BS13985 Report

Search the DGRC for BS13985

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5934-RA
Protein status:BS13985.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13985.complete Sequence

440 bp assembled on 2006-11-01

GenBank Submission: FJ637574

> BS13985.complete
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGTAAAAGCTTTCTAGACCAT

BS13985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 408 CG5934-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 784 CG5934-RA 126..534 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27273962..27274315 71..424 1770 100 Plus
3R 32079331 3R 27273830..27273885 16..71 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:05:13 has no hits.

BS13985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:23 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:42 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 123..542 9..434 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:03 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 127..532 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:23 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 123..542 9..434 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:41 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 127..532 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:41 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27273831..27273885 17..71 100 -> Plus
3R 27273963..27274313 72..422 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:03 Download gff for BS13985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23099553..23099607 17..71 100 -> Plus
arm_3R 23099685..23100035 72..422 100   Plus

BS13985.3prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS13985.3prime
ATGGTCTAGAAAGCTTTTACTTCTTTTTGGCCGCACTGGGACTGGTGGAC
TGGAACACCGATGAGGCCGACATCAGGTTCTCGATGTACTGGCCGAGCAC
CTGGTTCTCGGAGCGCAGCTTCAGATTTTCCTCCTTGACGGAATCGACGC
GTTGCGACAGGTCGTCCAGGGTGTTCTGCAGCTCCAGGACCTGTGTGATG
AGGCGGGCCTTCTCCTCCCGATCGTCCTGGGCCATTTCCATGGCCTCCAG
CGAATTGTGCGATGAATCTGGCGTGGAACTGCGGTTGGTGAACGATGAAC
GCAACGAGTCCATGGACCTCCCACTGGGCATTCGTCCCGTCGCCGGTGGC
TCGTCGTCCGGAATGACCACCTGTGGATCCTCGTCCATGTTGGGAATGCT
GTCGTCATTGTTTAACAGGGACATGTCGACTGATAACT

BS13985.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-PA 408 CG5934-RA 1..408 424..17 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 784 CG5934-RA 126..534 425..17 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27273962..27274315 370..17 1770 100 Minus
3R 32079331 3R 27273830..27273885 425..370 280 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:38:04 has no hits.

BS13985.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:28 Download gff for BS13985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-PA 1..408 17..424 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:11 Download gff for BS13985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 7..432 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:49 Download gff for BS13985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 7..432 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:49 Download gff for BS13985.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27273826..27273885 370..432 95 -> Minus
3R 27273963..27274322 7..369 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:11 Download gff for BS13985.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23099548..23099607 370..432 95 -> Minus
arm_3R 23099685..23100044 7..369 98   Minus

BS13985.5prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS13985.5prime
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGTAAAAGCTTTCTAGACC

BS13985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-PA 408 CG5934-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-RA 784 CG5934-RA 126..534 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27273962..27274315 71..424 1770 100 Plus
3R 32079331 3R 27273830..27273885 16..71 280 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:57:05 has no hits.

BS13985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:28 Download gff for BS13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-PA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:39 Download gff for BS13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 9..434 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:00 Download gff for BS13985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5934-RA 122..541 9..434 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:00 Download gff for BS13985.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27273826..27273885 9..71 95 -> Plus
3R 27273963..27274322 72..434 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:39 Download gff for BS13985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23099548..23099607 9..71 95 -> Plus
arm_3R 23099685..23100044 72..434 98   Plus

BS13985.pep Sequence

Translation from 16 to 423

> BS13985.pep
MSLLNNDDSIPNMDEDPQVVIPDDEPPATGRMPSGRSMDSLRSSFTNRSS
TPDSSHNSLEAMEMAQDDREEKARLITQVLELQNTLDDLSQRVDSVKEEN
LKLRSENQVLGQYIENLMSASSVFQSTSPSAAKKK*

BS13985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5934-PA 135 CG5934-PA 1..135 1..135 671 100 Plus