Clone Sequence Records
BS13985.complete Sequence
440 bp assembled on 2006-11-01
GenBank Submission: FJ637574
> BS13985.complete
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGTAAAAGCTTTCTAGACCAT
BS13985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 408 | CG5934-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 784 | CG5934-RA | 126..534 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27273962..27274315 | 71..424 | 1770 | 100 | Plus |
3R | 32079331 | 3R | 27273830..27273885 | 16..71 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:05:13 has no hits.
BS13985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:23 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:42 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 123..542 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:03 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 127..532 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:23 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 123..542 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:41 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 127..532 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:41 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27273831..27273885 | 17..71 | 100 | -> | Plus |
3R | 27273963..27274313 | 72..422 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:03 Download gff for
BS13985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23099553..23099607 | 17..71 | 100 | -> | Plus |
arm_3R | 23099685..23100035 | 72..422 | 100 | | Plus |
BS13985.3prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS13985.3prime
ATGGTCTAGAAAGCTTTTACTTCTTTTTGGCCGCACTGGGACTGGTGGAC
TGGAACACCGATGAGGCCGACATCAGGTTCTCGATGTACTGGCCGAGCAC
CTGGTTCTCGGAGCGCAGCTTCAGATTTTCCTCCTTGACGGAATCGACGC
GTTGCGACAGGTCGTCCAGGGTGTTCTGCAGCTCCAGGACCTGTGTGATG
AGGCGGGCCTTCTCCTCCCGATCGTCCTGGGCCATTTCCATGGCCTCCAG
CGAATTGTGCGATGAATCTGGCGTGGAACTGCGGTTGGTGAACGATGAAC
GCAACGAGTCCATGGACCTCCCACTGGGCATTCGTCCCGTCGCCGGTGGC
TCGTCGTCCGGAATGACCACCTGTGGATCCTCGTCCATGTTGGGAATGCT
GTCGTCATTGTTTAACAGGGACATGTCGACTGATAACT
BS13985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-PA | 408 | CG5934-RA | 1..408 | 424..17 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 784 | CG5934-RA | 126..534 | 425..17 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27273962..27274315 | 370..17 | 1770 | 100 | Minus |
3R | 32079331 | 3R | 27273830..27273885 | 425..370 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:38:04 has no hits.
BS13985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:28 Download gff for
BS13985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-PA | 1..408 | 17..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:11 Download gff for
BS13985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 7..432 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:49 Download gff for
BS13985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 7..432 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:49 Download gff for
BS13985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27273826..27273885 | 370..432 | 95 | -> | Minus |
3R | 27273963..27274322 | 7..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:11 Download gff for
BS13985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23099548..23099607 | 370..432 | 95 | -> | Minus |
arm_3R | 23099685..23100044 | 7..369 | 98 | | Minus |
BS13985.5prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS13985.5prime
GAAGTTATCAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCA
ACATGGACGAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCG
ACGGGACGAATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTT
CACCAACCGCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCA
TGGAAATGGCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAG
GTCCTGGAGCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTC
CGTCAAGGAGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCC
AGTACATCGAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGT
CCCAGTGCGGCCAAAAAGAAGTAAAAGCTTTCTAGACC
BS13985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-PA | 408 | CG5934-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-RA | 784 | CG5934-RA | 126..534 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27273962..27274315 | 71..424 | 1770 | 100 | Plus |
3R | 32079331 | 3R | 27273830..27273885 | 16..71 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:57:05 has no hits.
BS13985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:28 Download gff for
BS13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-PA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:39 Download gff for
BS13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 9..434 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:00 Download gff for
BS13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5934-RA | 122..541 | 9..434 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:00 Download gff for
BS13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27273826..27273885 | 9..71 | 95 | -> | Plus |
3R | 27273963..27274322 | 72..434 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:39 Download gff for
BS13985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23099548..23099607 | 9..71 | 95 | -> | Plus |
arm_3R | 23099685..23100044 | 72..434 | 98 | | Plus |
BS13985.pep Sequence
Translation from 16 to 423
> BS13985.pep
MSLLNNDDSIPNMDEDPQVVIPDDEPPATGRMPSGRSMDSLRSSFTNRSS
TPDSSHNSLEAMEMAQDDREEKARLITQVLELQNTLDDLSQRVDSVKEEN
LKLRSENQVLGQYIENLMSASSVFQSTSPSAAKKK*
BS13985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5934-PA | 135 | CG5934-PA | 1..135 | 1..135 | 671 | 100 | Plus |