Clone Sequence Records
BS13988.3prime Sequence
591 bp (552 high quality bases) assembled on 2006-10-13
> BS13988.3prime
ATGGTCTAGAAAGCTTCTATTTCTTTAGGAACACTTCGTGCAGCTCCACA
TCCTTCAGATTGACAATTGTGAGGCGGCGTGAGAACTTGCCAGTCTGCCA
GCGCTCCTCCAGTTCCTCGAGAGTCCTGCCCCTCGTCTCCGGGACAAAGA
CGCCGATGAAGGCGGCCGCAAGGAAGGATATTCCCGCATAGAAGGCAAAT
AGATTGGCTGTGCCCAAAGCGGCCTCCATATTCGGGTATATCTTCAGCAT
TATGAAGGCCAGAATCATGCCAAAGAAGATGGCTATCCCGGAGGCACTGC
CTCTCGCCCGCTGCGGGAAAACCTCGGAGATCATGAAAAAGGGCAGCGTC
AGCATGCCCATCGTGGAGAATACTATGTGGGCGACAATGCAGGCCACCGG
TAGCCAGTGCAAGGTGCCCAGTGTGTCCGGAAACCAGTTACCACCAGCCA
GGAGCAGCATGCAGGCGCCCATTCCGGTGGCCGAGAAGATTCCAGACGGC
TTGCGGCCCCACTTCTCAAAGATGCCGCTCATGAATAGCGTAGTGATTAT
CCTTGCCCCGCCGAGCATTACGGCCACCAGCACGGGATCAA
BS13988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-PA | 1578 | CG4607-RA | 1006..1578 | 589..17 | 2815 | 99.6 | Minus |
CG4607-PB | 1578 | CG4607-RB | 1006..1578 | 589..17 | 2815 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 2080 | CG4607-RB | 1023..1595 | 589..17 | 2835 | 99.7 | Minus |
CG4607-RA | 2603 | CG4607-RA | 1546..2118 | 589..17 | 2835 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7071632..7072204 | 589..17 | 2835 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:15:30 has no hits.
BS13988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:30 Download gff for
BS13988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-PB | 1006..1578 | 17..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:27 Download gff for
BS13988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 1546..2118 | 17..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:39 Download gff for
BS13988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 1546..2118 | 17..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:39 Download gff for
BS13988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7071632..7072204 | 17..589 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:27 Download gff for
BS13988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6965665..6966237 | 17..589 | 99 | | Minus |
BS13988.5prime Sequence
580 bp (533 high quality bases) assembled on 2006-10-13
> BS13988.5prime
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTATTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTG
BS13988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-PA | 1578 | CG4607-RA | 1..564 | 17..580 | 2795 | 99.8 | Plus |
CG4607-PB | 1578 | CG4607-RB | 1..564 | 17..580 | 2795 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 2080 | CG4607-RB | 18..581 | 17..580 | 2805 | 99.8 | Plus |
CG4607-RA | 2603 | CG4607-RA | 541..1104 | 17..580 | 2805 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7070429..7070722 | 287..580 | 1455 | 99.7 | Plus |
X | 23542271 | X | 7069953..7070223 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:54:33 has no hits.
BS13988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:31 Download gff for
BS13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-PB | 1..564 | 17..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:43 Download gff for
BS13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 532..1104 | 8..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:09 Download gff for
BS13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 532..1104 | 8..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:09 Download gff for
BS13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7070430..7070722 | 288..580 | 99 | | Plus |
X | 7069944..7070223 | 8..287 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:43 Download gff for
BS13988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6963977..6964256 | 8..287 | 98 | -> | Plus |
arm_X | 6964463..6964755 | 288..580 | 99 | | Plus |
BS13988.complete Sequence
1610 bp assembled on 2010-05-13
GenBank Submission: KX803451
> BS13988.complete
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTAGTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTGGGCTTGGCCAGCGGCATTCT
GTTGATGTACTGCCTCGGCTACTTCATTCGTCACAACATCCAGCTGATCT
TCGGCATCAGTTGCTGCTACCAACTGGCGGCCACACTGCTCGTCTTTCCC
ATGCCGGAATCGCCCAGCTGGCTGCTCACCCGAGGAAAGGAGGAGCGGGC
CAGGAAATCCCTCAGATACTTCCGCGGACTGCCGAAAAAAGAGGTGGACT
ACGTACCGGAATTCGAGGCGGAACTGGCGCACATGAAGGAGTTGGCAGAT
GCGAGCAACACCACCGCCGCCGGCGAATCCCTCAGCCAGATGATCCATCG
TCCGGAGGTCTACAAGCCCGTCCTGATGATGACCACGTTCTTTGGATTCC
AACAGGCGTGCGGTGTGGTGGTGATCATTGTCTATGCCGTCCAAATTGCC
CAACAGGCGGGAGTTACCATCGATCCCGTGCTGGTGGCCGTAATGCTCGG
CGTGGCAAGGATAATCACTACGCTATTCATGAGCGGCATCTTTGAGAAGT
GGGGCCGCAAGCCGTCTGGAATCTTCTCGGCCACCGGAATGGGCGCCTGC
ATGCTGCTCCTGGCTGGTGGTAACTGGTTTCCGGACACACTGGGCACCTT
GCACTGGCTACCGGTGGCCTGCATTGTCGCCCACATAGTATTCTCCACGA
TGGGCATGCTGACGCTGCCCTTTTTCATGATCTCCGAGGTTTTCCCGCAG
CGGGCGAGAGGCAGTGCCTCCGGGATAGCCATCTTCTTTGGCATGATTCT
GGCCTTCATAATGCTGAAGATATACCCGAATATGGAGGCCGCTTTGGGCA
CAGCCAATCTATTTGCCTTCTATGCGGGAATATCCTTCCTTGCGGCCGCC
TTCATCGGCGTCTTTGTCCCGGAGACGAGGGGCAGGACTCTCGAGGAACT
GGAGGAGCGCTGGCAGACTGGCAAGTTCTCACGCCGCCTCACAATTGTCA
ATCTGAAGGATGTGGAGCTGCACGAAGTGTTCCTAAAGAAATAGAAGCTT
TCTAGACCAT
BS13988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 1578 | CG4607-PB | 1..1578 | 17..1594 | 7875 | 99.9 | Plus |
CG4607-RA | 1578 | CG4607-PA | 1..1578 | 17..1594 | 7875 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-RB | 2080 | CG4607-RB | 18..1595 | 17..1594 | 7875 | 99.9 | Plus |
CG4607-RA | 2603 | CG4607-RA | 541..2118 | 17..1594 | 7875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7071400..7072204 | 790..1594 | 4010 | 99.9 | Plus |
X | 23542271 | X | 7070429..7070933 | 287..791 | 2525 | 100 | Plus |
X | 23542271 | X | 7069953..7070223 | 17..287 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:49 has no hits.
BS13988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:40 Download gff for
BS13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RB | 18..1589 | 17..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:40 Download gff for
BS13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 541..2112 | 17..1588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:04 Download gff for
BS13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4607-RA | 541..2112 | 17..1588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:04 Download gff for
BS13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7071402..7072198 | 792..1588 | 99 | | Plus |
X | 7070430..7070933 | 288..791 | 100 | -> | Plus |
X | 7069953..7070223 | 17..287 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:40 Download gff for
BS13988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6963986..6964256 | 17..287 | 100 | -> | Plus |
arm_X | 6964463..6964966 | 288..791 | 100 | -> | Plus |
arm_X | 6965435..6966231 | 792..1588 | 99 | | Plus |
BS13988.pep Sequence
Translation from 16 to 1593
> BS13988.pep
MKGQQEEQLVPPPAYKPTVVAKDTTKDSHAKEKPLGEGRLAVLRQELMVF
LGNSGVLGSGMVVSMPAVTLNQLHDETQPFWLNKDESSWFASIQNMACPL
GGLLVSYFLDRIGRKHTILLTNLIGLIGWILLVTSFMHSDRDMIYYQMLL
GRCFGGIMIGMFVSPVGVYSAEISLPKIRGRLILGTSLGLASGILLMYCL
GYFIRHNIQLIFGISCCYQLAATLLVFPMPESPSWLLTRGKEERARKSLR
YFRGLPKKEVDYVPEFEAELAHMKELADASNTTAAGESLSQMIHRPEVYK
PVLMMTTFFGFQQACGVVVIIVYAVQIAQQAGVTIDPVLVAVMLGVARII
TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGTLHWLPV
ACIVAHIVFSTMGMLTLPFFMISEVFPQRARGSASGIAIFFGMILAFIML
KIYPNMEAALGTANLFAFYAGISFLAAAFIGVFVPETRGRTLEELEERWQ
TGKFSRRLTIVNLKDVELHEVFLKK*
BS13988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4607-PB | 525 | CG4607-PB | 1..525 | 1..525 | 2705 | 100 | Plus |
CG4607-PA | 525 | CG4607-PA | 1..525 | 1..525 | 2705 | 100 | Plus |
CG8249-PC | 521 | CG8249-PC | 27..518 | 27..525 | 1109 | 44.9 | Plus |
CG8249-PB | 521 | CG8249-PB | 27..518 | 27..525 | 1109 | 44.9 | Plus |
CG8249-PA | 521 | CG8249-PA | 27..518 | 27..525 | 1109 | 44.9 | Plus |