Clone BS13988 Report

Search the DGRC for BS13988

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG4607-RA
Protein status:BS13988.pep: full length peptide match
Sequenced Size:1610

Clone Sequence Records

BS13988.3prime Sequence

591 bp (552 high quality bases) assembled on 2006-10-13

> BS13988.3prime
ATGGTCTAGAAAGCTTCTATTTCTTTAGGAACACTTCGTGCAGCTCCACA
TCCTTCAGATTGACAATTGTGAGGCGGCGTGAGAACTTGCCAGTCTGCCA
GCGCTCCTCCAGTTCCTCGAGAGTCCTGCCCCTCGTCTCCGGGACAAAGA
CGCCGATGAAGGCGGCCGCAAGGAAGGATATTCCCGCATAGAAGGCAAAT
AGATTGGCTGTGCCCAAAGCGGCCTCCATATTCGGGTATATCTTCAGCAT
TATGAAGGCCAGAATCATGCCAAAGAAGATGGCTATCCCGGAGGCACTGC
CTCTCGCCCGCTGCGGGAAAACCTCGGAGATCATGAAAAAGGGCAGCGTC
AGCATGCCCATCGTGGAGAATACTATGTGGGCGACAATGCAGGCCACCGG
TAGCCAGTGCAAGGTGCCCAGTGTGTCCGGAAACCAGTTACCACCAGCCA
GGAGCAGCATGCAGGCGCCCATTCCGGTGGCCGAGAAGATTCCAGACGGC
TTGCGGCCCCACTTCTCAAAGATGCCGCTCATGAATAGCGTAGTGATTAT
CCTTGCCCCGCCGAGCATTACGGCCACCAGCACGGGATCAA

BS13988.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-PA 1578 CG4607-RA 1006..1578 589..17 2815 99.6 Minus
CG4607-PB 1578 CG4607-RB 1006..1578 589..17 2815 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 2080 CG4607-RB 1023..1595 589..17 2835 99.7 Minus
CG4607-RA 2603 CG4607-RA 1546..2118 589..17 2835 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7071632..7072204 589..17 2835 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 22:15:30 has no hits.

BS13988.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:30 Download gff for BS13988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-PB 1006..1578 17..589 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:38:27 Download gff for BS13988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 1546..2118 17..589 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:39 Download gff for BS13988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 1546..2118 17..589 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:39 Download gff for BS13988.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7071632..7072204 17..589 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:38:27 Download gff for BS13988.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6965665..6966237 17..589 99   Minus

BS13988.5prime Sequence

580 bp (533 high quality bases) assembled on 2006-10-13

> BS13988.5prime
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTATTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTG

BS13988.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-PA 1578 CG4607-RA 1..564 17..580 2795 99.8 Plus
CG4607-PB 1578 CG4607-RB 1..564 17..580 2795 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 2080 CG4607-RB 18..581 17..580 2805 99.8 Plus
CG4607-RA 2603 CG4607-RA 541..1104 17..580 2805 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7070429..7070722 287..580 1455 99.7 Plus
X 23542271 X 7069953..7070223 17..287 1355 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:54:33 has no hits.

BS13988.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:31 Download gff for BS13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-PB 1..564 17..580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:50:43 Download gff for BS13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 532..1104 8..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:09 Download gff for BS13988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 532..1104 8..580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:09 Download gff for BS13988.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7070430..7070722 288..580 99   Plus
X 7069944..7070223 8..287 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:50:43 Download gff for BS13988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6963977..6964256 8..287 98 -> Plus
arm_X 6964463..6964755 288..580 99   Plus

BS13988.complete Sequence

1610 bp assembled on 2010-05-13

GenBank Submission: KX803451

> BS13988.complete
GAAGTTATCAGTCGACATGAAGGGCCAGCAGGAGGAGCAGCTGGTGCCGC
CGCCGGCCTACAAGCCCACAGTTGTCGCCAAGGACACGACAAAGGACTCC
CACGCGAAGGAGAAGCCCCTCGGCGAGGGTCGACTGGCTGTGCTGCGACA
GGAACTGATGGTCTTCCTGGGCAACAGCGGCGTTCTCGGCTCCGGAATGG
TGGTCAGCATGCCGGCAGTTACTCTCAATCAGCTGCACGACGAAACACAG
CCATTTTGGCTCAACAAGGACGAGTCGAGTTGGTTTGCCTCCATCCAGAA
CATGGCGTGTCCTTTGGGTGGACTTCTGGTCAGCTACTTCCTGGACAGGA
TTGGCCGCAAACACACCATCCTGCTGACCAATTTGATAGGACTGATTGGC
TGGATCCTGCTGGTAACCAGTTTCATGCACTCCGATCGCGACATGATCTA
CTATCAAATGCTGTTGGGTCGTTGTTTTGGCGGTATCATGATCGGCATGT
TCGTATCGCCAGTGGGTGTCTACTCCGCCGAGATTAGTTTACCCAAGATA
CGCGGTCGCCTGATCCTGGGCACCTCGCTGGGCTTGGCCAGCGGCATTCT
GTTGATGTACTGCCTCGGCTACTTCATTCGTCACAACATCCAGCTGATCT
TCGGCATCAGTTGCTGCTACCAACTGGCGGCCACACTGCTCGTCTTTCCC
ATGCCGGAATCGCCCAGCTGGCTGCTCACCCGAGGAAAGGAGGAGCGGGC
CAGGAAATCCCTCAGATACTTCCGCGGACTGCCGAAAAAAGAGGTGGACT
ACGTACCGGAATTCGAGGCGGAACTGGCGCACATGAAGGAGTTGGCAGAT
GCGAGCAACACCACCGCCGCCGGCGAATCCCTCAGCCAGATGATCCATCG
TCCGGAGGTCTACAAGCCCGTCCTGATGATGACCACGTTCTTTGGATTCC
AACAGGCGTGCGGTGTGGTGGTGATCATTGTCTATGCCGTCCAAATTGCC
CAACAGGCGGGAGTTACCATCGATCCCGTGCTGGTGGCCGTAATGCTCGG
CGTGGCAAGGATAATCACTACGCTATTCATGAGCGGCATCTTTGAGAAGT
GGGGCCGCAAGCCGTCTGGAATCTTCTCGGCCACCGGAATGGGCGCCTGC
ATGCTGCTCCTGGCTGGTGGTAACTGGTTTCCGGACACACTGGGCACCTT
GCACTGGCTACCGGTGGCCTGCATTGTCGCCCACATAGTATTCTCCACGA
TGGGCATGCTGACGCTGCCCTTTTTCATGATCTCCGAGGTTTTCCCGCAG
CGGGCGAGAGGCAGTGCCTCCGGGATAGCCATCTTCTTTGGCATGATTCT
GGCCTTCATAATGCTGAAGATATACCCGAATATGGAGGCCGCTTTGGGCA
CAGCCAATCTATTTGCCTTCTATGCGGGAATATCCTTCCTTGCGGCCGCC
TTCATCGGCGTCTTTGTCCCGGAGACGAGGGGCAGGACTCTCGAGGAACT
GGAGGAGCGCTGGCAGACTGGCAAGTTCTCACGCCGCCTCACAATTGTCA
ATCTGAAGGATGTGGAGCTGCACGAAGTGTTCCTAAAGAAATAGAAGCTT
TCTAGACCAT

BS13988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 1578 CG4607-PB 1..1578 17..1594 7875 99.9 Plus
CG4607-RA 1578 CG4607-PA 1..1578 17..1594 7875 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-RB 2080 CG4607-RB 18..1595 17..1594 7875 99.9 Plus
CG4607-RA 2603 CG4607-RA 541..2118 17..1594 7875 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7071400..7072204 790..1594 4010 99.9 Plus
X 23542271 X 7070429..7070933 287..791 2525 100 Plus
X 23542271 X 7069953..7070223 17..287 1355 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:49 has no hits.

BS13988.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:40 Download gff for BS13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RB 18..1589 17..1588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:40 Download gff for BS13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 541..2112 17..1588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:04 Download gff for BS13988.complete
Subject Subject Range Query Range Percent Splice Strand
CG4607-RA 541..2112 17..1588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:04 Download gff for BS13988.complete
Subject Subject Range Query Range Percent Splice Strand
X 7071402..7072198 792..1588 99   Plus
X 7070430..7070933 288..791 100 -> Plus
X 7069953..7070223 17..287 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:40 Download gff for BS13988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6963986..6964256 17..287 100 -> Plus
arm_X 6964463..6964966 288..791 100 -> Plus
arm_X 6965435..6966231 792..1588 99   Plus

BS13988.pep Sequence

Translation from 16 to 1593

> BS13988.pep
MKGQQEEQLVPPPAYKPTVVAKDTTKDSHAKEKPLGEGRLAVLRQELMVF
LGNSGVLGSGMVVSMPAVTLNQLHDETQPFWLNKDESSWFASIQNMACPL
GGLLVSYFLDRIGRKHTILLTNLIGLIGWILLVTSFMHSDRDMIYYQMLL
GRCFGGIMIGMFVSPVGVYSAEISLPKIRGRLILGTSLGLASGILLMYCL
GYFIRHNIQLIFGISCCYQLAATLLVFPMPESPSWLLTRGKEERARKSLR
YFRGLPKKEVDYVPEFEAELAHMKELADASNTTAAGESLSQMIHRPEVYK
PVLMMTTFFGFQQACGVVVIIVYAVQIAQQAGVTIDPVLVAVMLGVARII
TTLFMSGIFEKWGRKPSGIFSATGMGACMLLLAGGNWFPDTLGTLHWLPV
ACIVAHIVFSTMGMLTLPFFMISEVFPQRARGSASGIAIFFGMILAFIML
KIYPNMEAALGTANLFAFYAGISFLAAAFIGVFVPETRGRTLEELEERWQ
TGKFSRRLTIVNLKDVELHEVFLKK*

BS13988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4607-PB 525 CG4607-PB 1..525 1..525 2705 100 Plus
CG4607-PA 525 CG4607-PA 1..525 1..525 2705 100 Plus
CG8249-PC 521 CG8249-PC 27..518 27..525 1109 44.9 Plus
CG8249-PB 521 CG8249-PB 27..518 27..525 1109 44.9 Plus
CG8249-PA 521 CG8249-PA 27..518 27..525 1109 44.9 Plus