Clone Sequence Records
BS13989.3prime Sequence
577 bp (512 high quality bases) assembled on 2006-10-13
> BS13989.3prime
ATGGTCTAGAAAGCTTTCAGGGAAGCTCCTTCTTAAAGATGTTCCATTTC
CAGCTCCATTGATTTTCCAGACTGATCAACTGCTGGTAGGAAGCATAGTC
ATCCTTTGCGAACTCCTTCAGCCGGGCCAGCTGCATCATGGCCTCCTCGG
TGGAATAGATAGGCTCTATCAGAGTCACGGGGTATGGCTCATCACAATCG
TCCTTATTCGAGATGGGTTCGCTTTTCACCAGAATCGCCTCGAACTCCTG
CAGATCCAGGCTGTCACCGGTGTCATTGTATCGGACGTTGTGTCGCTTTC
GCCATTTCTCCAGCCATCCGGAGGAGGCAGAGAAATTGGAGTGGCCCAGC
TCCACAGCTAACTGCTTGGCCTTCTTCCGCACCATTTCCCCCGATATGGG
TATATTCTCGGTACGGACACGGGAGAACCAATCAAAGCACATCTCATCGA
TTTGGGCGCCCCGCTGAGAGAGGGGATTCCTCCGCATCTGATTCAACTTA
AGTTCTCCACTCAACAGACCCTCTTTAATCGACTGTTTGTGCTTCAAAAT
GTCTGCTGCTTGTGCCTTTCCAATGTT
BS13989.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12346-PA | 678 | cag-RA | 118..678 | 577..17 | 2780 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 264..824 | 577..17 | 2790 | 99.8 | Minus |
| cag-RA | 1324 | CG12346-RA | 563..1123 | 577..17 | 2790 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893235..10893795 | 17..577 | 2790 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:07:13 has no hits.
BS13989.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:31 Download gff for
BS13989.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12346-PA | 118..678 | 17..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:55 Download gff for
BS13989.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 563..1123 | 17..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:40 Download gff for
BS13989.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 563..1123 | 17..577 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:40 Download gff for
BS13989.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893235..10893795 | 17..577 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:55 Download gff for
BS13989.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780740..6781300 | 17..577 | 99 | | Plus |
BS13989.5prime Sequence
563 bp (560 high quality bases) assembled on 2006-10-13
> BS13989.5prime
GAAGTTATCAGTCGACATGCCATCGGGAAGAGTCAGAAAACCTAGAACCT
CGCTCACTTTGGAAGAGAAAATGGAGGTAATCCAGTCCCAGGAGCGAAAC
AAGCTATCGGTTCGGGATCTGGCCAAGAGGTTTAACATTGGAAAGACACA
AGCAGCAGACATTTTGAAGCACAAACAGTCGATTAAAGAGGGTCTGTTGA
GTGGAGAACTTAAGTTGAATCAGATGCGGAGGAATCCCCTCTCTCAGCGG
GGCGCCCAAATCGATGAGATGTGCTTTGATTGGTTCTCCCGTGTCCGTAC
CGAGAATATACCCATATCGGGGGAAATGGTGCGGAAGAAGGCCAAGCAGT
TAGCTGTGGAGCTGGGCCACTCCAATTTCTCTGCCTCCTCCGGATGGCTG
GAGAAATGGCGAAAGCGACACAACGTCCGATACAATGACACCGGTGACAG
CCTGGATCTGCAGGAGTTCGAGGCGATTCTGGTGAAAAGCGAACCCCTCT
CGAATAAGGACGATTGTGATGAGCCATACCCCGTGACTCTGATAGAGCCT
ATCTATTCCACCG
BS13989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12346-PA | 678 | cag-RA | 1..547 | 17..563 | 2710 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..693 | 17..563 | 2720 | 99.8 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..992 | 17..563 | 2720 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893366..10893801 | 563..128 | 2165 | 99.8 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:29:52 has no hits.
BS13989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:32 Download gff for
BS13989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12346-PA | 1..547 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:16 Download gff for
BS13989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..992 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:28 Download gff for
BS13989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..992 | 17..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:28 Download gff for
BS13989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893366..10893799 | 130..563 | 99 | <- | Minus |
| 2R | 10893857..10893969 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:16 Download gff for
BS13989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780871..6781304 | 130..563 | 99 | <- | Minus |
| arm_2R | 6781362..6781474 | 17..129 | 100 | | Minus |
BS13989.complete Sequence
710 bp assembled on 2006-11-01
GenBank Submission: FJ637575
> BS13989.complete
GAAGTTATCAGTCGACATGCCATCGGGAAGAGTCAGAAAACCTAGAACCT
CGCTCACTTTGGAAGAGAAAATGGAGGTAATCCAGTCCCAGGAGCGAAAC
AAGCTATCGGTTCGGGATCTGGCCAAGAGGTTTAACATTGGAAAGACACA
AGCAGCAGACATTTTGAAGCACAAACAGTCGATTAAAGAGGGTCTGTTGA
GTGGAGAACTTAAGTTGAATCAGATGCGGAGGAATCCCCTCTCTCAGCGG
GGCGCCCAAATCGATGAGATGTGCTTTGATTGGTTCTCCCGTGTCCGTAC
CGAGAATATACCCATATCGGGGGAAATGGTGCGGAAGAAGGCCAAGCAGT
TAGCTGTGGAGCTGGGCCACTCCAATTTCTCTGCCTCCTCCGGATGGCTG
GAGAAATGGCGAAAGCGACACAACGTCCGATACAATGACACCGGTGACAG
CCTGGATCTGCAGGAGTTCGAGGCGATTCTGGTGAAAAGCGAACCCATCT
CGAATAAGGACGATTGTGATGAGCCATACCCCGTGACTCTGATAGAGCCT
ATCTATTCCACCGAGGAGGCCATGATGCAGCTGGCCCGGCTGAAGGAGTT
CGCAAAGGATGACTATGCTTCCTACCAGCAGTTGATCAGTCTGGAAAATC
AATGGAGCTGGAAATGGAACATCTTTAAGAAGGAGCTTCCCTGAAAGCTT
TCTAGACCAT
BS13989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 678 | CG12346-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
| cag-RA | 678 | CG12346-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..824 | 17..694 | 3390 | 100 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..1123 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893235..10893801 | 694..128 | 2835 | 100 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:56:41 has no hits.
BS13989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:38:24 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:11:43 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1069 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:14 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1122 | 17..693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:38:24 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1069 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:25 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1122 | 17..693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:25 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893236..10893799 | 130..693 | 100 | <- | Minus |
| 2R | 10893857..10893969 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:14 Download gff for
BS13989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780741..6781304 | 130..693 | 100 | <- | Minus |
| arm_2R | 6781362..6781474 | 17..129 | 100 | | Minus |
BS13989.pep Sequence
Translation from 16 to 693
> BS13989.pep
MPSGRVRKPRTSLTLEEKMEVIQSQERNKLSVRDLAKRFNIGKTQAADIL
KHKQSIKEGLLSGELKLNQMRRNPLSQRGAQIDEMCFDWFSRVRTENIPI
SGEMVRKKAKQLAVELGHSNFSASSGWLEKWRKRHNVRYNDTGDSLDLQE
FEAILVKSEPISNKDDCDEPYPVTLIEPIYSTEEAMMQLARLKEFAKDDY
ASYQQLISLENQWSWKWNIFKKELP*
BS13989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-PB | 225 | CG12346-PB | 1..225 | 1..225 | 1169 | 100 | Plus |
| cag-PA | 225 | CG12346-PA | 1..225 | 1..225 | 1169 | 100 | Plus |
