Clone Sequence Records
BS13990.5prime Sequence
481 bp (470 high quality bases) assembled on 2006-10-13
> BS13990.5prime
GAAGTTATCAGTCGACATGAAACTACCAATCCTTCTGATAACCCTTGTGG
CCATGGTGGCGGCCAAGTCCGCACCTGGTCGCATGGCCGCCCGGTACGAC
CACTTCCGTATCTATCAGCTGACCATTGAGACGAACTTGCAGATGGAGGA
GCTTAAGAAGATTCACGAACACATCTCTGTGCACTTCCTCAACGAACTGG
GTGCTGTTGGAAACAAATACAATGTGATCGTTGGTCCCTTGTTCCACAGA
GCCCTCGAGAAGACCCTTAAATTCCTCGAAATTGTTTACGAAGTGATTGT
CGACGATCTGCAGAAATTGATAGATGAATCCTCTGTTGGCGACGATTCCC
AGATGGAATGGGAGACCTACCACACTCTGGACACCATTTACGATTGGATC
GATCAGGAGTGTGCTGCCCACGATTTCCTGGAGTGCAAGGTGATTGGACA
GTCCTACGAGGGTCGCGACATCCAGAGCATT
BS13990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12374-PA | 1269 | CG12374-RA | 1..465 | 17..481 | 2300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12374-RA | 1464 | CG12374-RA | 37..505 | 13..481 | 2315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12762149..12762316 | 13..180 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 12762585..12762750 | 316..481 | 815 | 99.4 | Plus |
2R | 25286936 | 2R | 12762386..12762522 | 179..315 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:18:11 has no hits.
BS13990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:32 Download gff for
BS13990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-PA | 1..465 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:52 Download gff for
BS13990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-RA | 35..505 | 8..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:08 Download gff for
BS13990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-RA | 35..505 | 8..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:08 Download gff for
BS13990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12762147..12762314 | 8..178 | 97 | -> | Plus |
2R | 12762386..12762522 | 179..315 | 100 | -> | Plus |
2R | 12762585..12762750 | 316..481 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:52 Download gff for
BS13990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8649652..8649819 | 8..178 | 97 | -> | Plus |
arm_2R | 8649891..8650027 | 179..315 | 100 | -> | Plus |
arm_2R | 8650090..8650255 | 316..481 | 99 | | Plus |
BS13990.complete Sequence
1301 bp assembled on 2010-06-25
GenBank Submission: KX800471
> BS13990.complete
GAAGTTATCAGTCGACATGAAACTACCAATCCTTCTGATAACCCTTGTGG
CCATGGTGGCGGCCAAGTCCGCACCTGGTCGCATGGCCGCCCGGTACGAC
CACTTCCGTATCTATCAGCTGACCATTGAGACGAACTTGCAGATGGAGGA
GCTTAAGAAGATTCACGAACACATCTCTGTGCACTTCCTCAACGAACTGG
GTGCTGTTGGAAACAAATACAATGTGATCGTTGGTCCCTTGTTCCACAGA
GCCCTCGAGAAGACCCTTAAATTCCTCGAAATTGTTTACGAAGTGATTGT
CGACGATCTGCAGAAATTGATAGATGAATCCTCTGTTGGCGACGATTCCC
AGATGGAATGGGAGACCTACCACACTCTGGACACCATTTACGATTGGATC
GATCAGGAGTGTGCTGCCCACGATTTCCTGGAGTGCAAGGTGATTGGACA
GTCCTACGAGGGTCGCGACATCAAGAGCATTAGGTTGTCGAAGCGTTCGG
GCAACAAGGCCATCTTCCTGGAGGGCAACATCCATGCCATGGAGTGGATC
TCGTCGGCCACCGTCACCTTCCTGTTGAACCAGTTGATCAACTCCGAGGA
TCCGGAAATGCAGCGACTGAGCGAAGAGTACGATTGGATTGTGGTGCCCA
TGGTGAACCCGGATGGCTTCGTTTACACCCACGAGGTGGAGCGTTTGTGG
CGCAAGAACCGTCGTCCCAACGGATACCGCAACGAAAGTGGAGATTGCTA
CGGCATTGACATGAACCGCAACTTTGACTACCACTGGGGAGGTGCCGGCT
GGAACATCGATGAGCCCTGCGATCACTGGTTCGGTGGTGAGGAGCCCAAC
ACCGAGGTGGAGATCATCTCGCTGCAGAACTTTGTGAGCTCCTTCGAGGA
TGGCTACATCCGATCGTACATGGCCTACCATGCCTACGGACAGTATGTCC
TCCTGCCCTACGGACACTCCAACACCGAGTTCCCGCCCAACTACGAGCAG
ATGAAGCGCATTGCCGCTGCATTCTCCGATGCTGCCGCTGATGTCTATGG
TTCCACCTTCACCTATGGAGCTAGTGGTCTGCTTAACTATGTCGTTTCGG
GAGCTGCCAAGGATTGGGCCTATGGCGTAAAGAAAATCCCATTCACCTGC
ACCGTGGAACTGCGTGACAAGGGCACCTTCGGATTCTTCCTGCCCTCCAA
CCAGATCACCGAGGTGGGTCTCGAGGTCACCGCTGGTCTTAAGGCTCTGG
TCAACAAGGCTGCCGAGGAGGGCATTTTTGACTAGAAGCTTTCTAGACCA
T
BS13990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12374-RA | 1269 | CG12374-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12374-RA | 1464 | CG12374-RA | 37..1310 | 13..1286 | 6355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12762585..12763062 | 316..793 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 12763116..12763414 | 790..1088 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 12763474..12763671 | 1089..1286 | 990 | 100 | Plus |
2R | 25286936 | 2R | 12762149..12762316 | 13..180 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 12762386..12762522 | 179..315 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:46:51 has no hits.
BS13990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:36 Download gff for
BS13990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-RA | 42..1310 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:23 Download gff for
BS13990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-RA | 41..1309 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:55 Download gff for
BS13990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12374-RA | 41..1309 | 17..1285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:55 Download gff for
BS13990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12762153..12762314 | 17..178 | 100 | -> | Plus |
2R | 12762386..12762522 | 179..315 | 100 | -> | Plus |
2R | 12762585..12763060 | 316..791 | 100 | -> | Plus |
2R | 12763118..12763414 | 792..1088 | 100 | -> | Plus |
2R | 12763474..12763670 | 1089..1285 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:23 Download gff for
BS13990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8650979..8651175 | 1089..1285 | 100 | | Plus |
arm_2R | 8650090..8650565 | 316..791 | 100 | -> | Plus |
arm_2R | 8649658..8649819 | 17..178 | 100 | -> | Plus |
arm_2R | 8649891..8650027 | 179..315 | 100 | -> | Plus |
arm_2R | 8650623..8650919 | 792..1088 | 100 | -> | Plus |
BS13990.pep Sequence
Translation from 16 to 1284
> BS13990.pep
MKLPILLITLVAMVAAKSAPGRMAARYDHFRIYQLTIETNLQMEELKKIH
EHISVHFLNELGAVGNKYNVIVGPLFHRALEKTLKFLEIVYEVIVDDLQK
LIDESSVGDDSQMEWETYHTLDTIYDWIDQECAAHDFLECKVIGQSYEGR
DIKSIRLSKRSGNKAIFLEGNIHAMEWISSATVTFLLNQLINSEDPEMQR
LSEEYDWIVVPMVNPDGFVYTHEVERLWRKNRRPNGYRNESGDCYGIDMN
RNFDYHWGGAGWNIDEPCDHWFGGEEPNTEVEIISLQNFVSSFEDGYIRS
YMAYHAYGQYVLLPYGHSNTEFPPNYEQMKRIAAAFSDAAADVYGSTFTY
GASGLLNYVVSGAAKDWAYGVKKIPFTCTVELRDKGTFGFFLPSNQITEV
GLEVTAGLKALVNKAAEEGIFD*
BS13990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12374-PA | 422 | CG12374-PA | 1..422 | 1..422 | 2250 | 100 | Plus |
CG14820-PA | 416 | CG14820-PA | 22..412 | 26..417 | 803 | 39.7 | Plus |
CG18585-PB | 422 | CG18585-PB | 1..420 | 1..419 | 790 | 38.6 | Plus |
CG18585-PA | 422 | CG18585-PA | 1..420 | 1..419 | 790 | 38.6 | Plus |
CG7025-PA | 429 | CG7025-PA | 6..421 | 3..419 | 741 | 36.8 | Plus |