Clone BS13990 Report

Search the DGRC for BS13990

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:139
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG12374-RA
Protein status:BS13990.pep: full length peptide match
Sequenced Size:1301

Clone Sequence Records

BS13990.5prime Sequence

481 bp (470 high quality bases) assembled on 2006-10-13

> BS13990.5prime
GAAGTTATCAGTCGACATGAAACTACCAATCCTTCTGATAACCCTTGTGG
CCATGGTGGCGGCCAAGTCCGCACCTGGTCGCATGGCCGCCCGGTACGAC
CACTTCCGTATCTATCAGCTGACCATTGAGACGAACTTGCAGATGGAGGA
GCTTAAGAAGATTCACGAACACATCTCTGTGCACTTCCTCAACGAACTGG
GTGCTGTTGGAAACAAATACAATGTGATCGTTGGTCCCTTGTTCCACAGA
GCCCTCGAGAAGACCCTTAAATTCCTCGAAATTGTTTACGAAGTGATTGT
CGACGATCTGCAGAAATTGATAGATGAATCCTCTGTTGGCGACGATTCCC
AGATGGAATGGGAGACCTACCACACTCTGGACACCATTTACGATTGGATC
GATCAGGAGTGTGCTGCCCACGATTTCCTGGAGTGCAAGGTGATTGGACA
GTCCTACGAGGGTCGCGACATCCAGAGCATT

BS13990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-PA 1269 CG12374-RA 1..465 17..481 2300 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-RA 1464 CG12374-RA 37..505 13..481 2315 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12762149..12762316 13..180 825 99.4 Plus
2R 25286936 2R 12762585..12762750 316..481 815 99.4 Plus
2R 25286936 2R 12762386..12762522 179..315 685 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:18:11 has no hits.

BS13990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:46:32 Download gff for BS13990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12374-PA 1..465 17..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:09:52 Download gff for BS13990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 35..505 8..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:08 Download gff for BS13990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 35..505 8..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:08 Download gff for BS13990.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12762147..12762314 8..178 97 -> Plus
2R 12762386..12762522 179..315 100 -> Plus
2R 12762585..12762750 316..481 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:09:52 Download gff for BS13990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8649652..8649819 8..178 97 -> Plus
arm_2R 8649891..8650027 179..315 100 -> Plus
arm_2R 8650090..8650255 316..481 99   Plus

BS13990.complete Sequence

1301 bp assembled on 2010-06-25

GenBank Submission: KX800471

> BS13990.complete
GAAGTTATCAGTCGACATGAAACTACCAATCCTTCTGATAACCCTTGTGG
CCATGGTGGCGGCCAAGTCCGCACCTGGTCGCATGGCCGCCCGGTACGAC
CACTTCCGTATCTATCAGCTGACCATTGAGACGAACTTGCAGATGGAGGA
GCTTAAGAAGATTCACGAACACATCTCTGTGCACTTCCTCAACGAACTGG
GTGCTGTTGGAAACAAATACAATGTGATCGTTGGTCCCTTGTTCCACAGA
GCCCTCGAGAAGACCCTTAAATTCCTCGAAATTGTTTACGAAGTGATTGT
CGACGATCTGCAGAAATTGATAGATGAATCCTCTGTTGGCGACGATTCCC
AGATGGAATGGGAGACCTACCACACTCTGGACACCATTTACGATTGGATC
GATCAGGAGTGTGCTGCCCACGATTTCCTGGAGTGCAAGGTGATTGGACA
GTCCTACGAGGGTCGCGACATCAAGAGCATTAGGTTGTCGAAGCGTTCGG
GCAACAAGGCCATCTTCCTGGAGGGCAACATCCATGCCATGGAGTGGATC
TCGTCGGCCACCGTCACCTTCCTGTTGAACCAGTTGATCAACTCCGAGGA
TCCGGAAATGCAGCGACTGAGCGAAGAGTACGATTGGATTGTGGTGCCCA
TGGTGAACCCGGATGGCTTCGTTTACACCCACGAGGTGGAGCGTTTGTGG
CGCAAGAACCGTCGTCCCAACGGATACCGCAACGAAAGTGGAGATTGCTA
CGGCATTGACATGAACCGCAACTTTGACTACCACTGGGGAGGTGCCGGCT
GGAACATCGATGAGCCCTGCGATCACTGGTTCGGTGGTGAGGAGCCCAAC
ACCGAGGTGGAGATCATCTCGCTGCAGAACTTTGTGAGCTCCTTCGAGGA
TGGCTACATCCGATCGTACATGGCCTACCATGCCTACGGACAGTATGTCC
TCCTGCCCTACGGACACTCCAACACCGAGTTCCCGCCCAACTACGAGCAG
ATGAAGCGCATTGCCGCTGCATTCTCCGATGCTGCCGCTGATGTCTATGG
TTCCACCTTCACCTATGGAGCTAGTGGTCTGCTTAACTATGTCGTTTCGG
GAGCTGCCAAGGATTGGGCCTATGGCGTAAAGAAAATCCCATTCACCTGC
ACCGTGGAACTGCGTGACAAGGGCACCTTCGGATTCTTCCTGCCCTCCAA
CCAGATCACCGAGGTGGGTCTCGAGGTCACCGCTGGTCTTAAGGCTCTGG
TCAACAAGGCTGCCGAGGAGGGCATTTTTGACTAGAAGCTTTCTAGACCA
T

BS13990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-RA 1269 CG12374-PA 1..1269 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-RA 1464 CG12374-RA 37..1310 13..1286 6355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12762585..12763062 316..793 2390 100 Plus
2R 25286936 2R 12763116..12763414 790..1088 1495 100 Plus
2R 25286936 2R 12763474..12763671 1089..1286 990 100 Plus
2R 25286936 2R 12762149..12762316 13..180 825 99.4 Plus
2R 25286936 2R 12762386..12762522 179..315 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:46:51 has no hits.

BS13990.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:36 Download gff for BS13990.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 42..1310 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:23 Download gff for BS13990.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 41..1309 17..1285 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:55 Download gff for BS13990.complete
Subject Subject Range Query Range Percent Splice Strand
CG12374-RA 41..1309 17..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:55 Download gff for BS13990.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12762153..12762314 17..178 100 -> Plus
2R 12762386..12762522 179..315 100 -> Plus
2R 12762585..12763060 316..791 100 -> Plus
2R 12763118..12763414 792..1088 100 -> Plus
2R 12763474..12763670 1089..1285 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:23 Download gff for BS13990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8650979..8651175 1089..1285 100   Plus
arm_2R 8650090..8650565 316..791 100 -> Plus
arm_2R 8649658..8649819 17..178 100 -> Plus
arm_2R 8649891..8650027 179..315 100 -> Plus
arm_2R 8650623..8650919 792..1088 100 -> Plus

BS13990.pep Sequence

Translation from 16 to 1284

> BS13990.pep
MKLPILLITLVAMVAAKSAPGRMAARYDHFRIYQLTIETNLQMEELKKIH
EHISVHFLNELGAVGNKYNVIVGPLFHRALEKTLKFLEIVYEVIVDDLQK
LIDESSVGDDSQMEWETYHTLDTIYDWIDQECAAHDFLECKVIGQSYEGR
DIKSIRLSKRSGNKAIFLEGNIHAMEWISSATVTFLLNQLINSEDPEMQR
LSEEYDWIVVPMVNPDGFVYTHEVERLWRKNRRPNGYRNESGDCYGIDMN
RNFDYHWGGAGWNIDEPCDHWFGGEEPNTEVEIISLQNFVSSFEDGYIRS
YMAYHAYGQYVLLPYGHSNTEFPPNYEQMKRIAAAFSDAAADVYGSTFTY
GASGLLNYVVSGAAKDWAYGVKKIPFTCTVELRDKGTFGFFLPSNQITEV
GLEVTAGLKALVNKAAEEGIFD*

BS13990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12374-PA 422 CG12374-PA 1..422 1..422 2250 100 Plus
CG14820-PA 416 CG14820-PA 22..412 26..417 803 39.7 Plus
CG18585-PB 422 CG18585-PB 1..420 1..419 790 38.6 Plus
CG18585-PA 422 CG18585-PA 1..420 1..419 790 38.6 Plus
CG7025-PA 429 CG7025-PA 6..421 3..419 741 36.8 Plus